Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 2.2e-216 755.4 386 100.0
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 7.4e-164 580.9 389 77.9
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 1.8e-162 576.2 387 77.3
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.1e-156 557.0 387 75.2
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 1.3e-155 553.5 346 81.2
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 2.8e-155 552.4 381 76.6
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 4.8e-155 551.6 303 89.4
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 6.3e-155 551.2 378 75.9
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 2.2e-152 542.7 384 75.5
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 2.9e-152 542.3 411 70.6
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.9e-151 539.7 405 71.9
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 2.5e-151 539.3 382 75.4
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 7.2e-151 537.7 377 75.1
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 6.1e-150 534.6 329 79.3
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 2.3e-149 532.7 373 74.0
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 5.2e-149 531.6 342 78.9
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 3.7e-147 525.4 336 76.8
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 3.7e-147 525.4 374 73.0
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 1.4e-146 523.5 382 71.7
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 9.1e-146 520.8 366 74.6
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 7.7e-145 517.7 374 73.3
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.0e-144 517.3 367 72.8
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 1.0e-144 517.3 302 83.1
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.0e-144 517.3 381 70.6
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 2.2e-144 516.2 378 70.6
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 5.0e-144 515.0 387 71.3
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 5.0e-144 515.0 387 71.6
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 5.0e-144 515.0 362 71.5
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 6.5e-144 514.6 375 71.7
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 1.5e-143 513.5 371 70.1
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 3.2e-143 512.3 319 77.7
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 4.2e-143 511.9 385 71.2
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 2.1e-142 509.6 364 71.7
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 6.1e-142 508.1 306 79.7
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 8.0e-142 507.7 382 72.0
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.0e-141 507.3 326 77.0
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 1.4e-141 506.9 375 69.9
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 1.4e-141 506.9 332 77.4
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.8e-141 506.5 385 70.6
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.8e-141 506.5 378 69.6
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 2.3e-141 506.1 382 67.8
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 4.0e-141 505.4 290 85.2
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.5e-140 503.4 326 77.0
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.4e-140 501.9 387 72.1
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.7e-139 500.0 306 81.7
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 8.2e-139 497.7 318 76.4
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.8e-138 496.5 380 69.2
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 1.8e-138 496.5 360 70.0
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 2.4e-138 496.1 369 68.6
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 3.1e-138 495.7 365 69.6
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 5.3e-138 495.0 362 69.6
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.6e-137 493.4 394 69.5
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 1.6e-137 493.4 302 80.8
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 4.5e-137 491.9 365 70.1
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 5.9e-137 491.5 392 66.1
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.7e-136 490.0 371 68.7
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 5.0e-136 488.4 357 70.0
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 6.5e-136 488.0 335 75.5
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.1e-135 487.3 335 75.8
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 4.2e-135 485.3 401 66.3
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 4.2e-135 485.3 371 67.9
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.2e-134 483.8 334 72.2
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.0e-133 480.7 332 71.7
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 5.2e-133 478.4 333 73.0
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 5.2e-133 478.4 379 66.8
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 6.8e-133 478.0 371 70.1
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 2.0e-132 476.5 307 76.5
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 2.6e-132 476.1 352 69.3
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 5.7e-132 474.9 334 70.4
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 2.8e-131 472.6 381 64.0
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 8.3e-131 471.1 381 65.1
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 8.3e-131 471.1 329 71.4
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 1.1e-130 470.7 388 66.8
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 4.1e-130 468.8 375 65.9
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 4.1e-130 468.8 428 61.7
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 5.4e-130 468.4 375 65.3
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 1.2e-129 467.2 377 64.7
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 2.7e-129 466.1 364 66.2
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 1.3e-128 463.8 356 66.0
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 1.3e-128 463.8 356 66.0
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.3e-128 463.8 370 65.4
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 1.3e-128 463.8 345 68.1
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.9e-128 462.6 378 65.1
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 4.7e-126 455.3 312 72.1
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.5e-124 450.3 385 63.6
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 1.5e-124 450.3 334 66.5
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 3.1e-122 442.6 333 66.1
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 4.5e-121 438.7 366 63.4
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 4.5e-121 438.7 329 65.3
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.6e-118 429.1 252 83.3
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.4e-117 427.2 378 62.7
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 2.0e-116 423.3 351 62.4
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.7e-115 420.2 274 73.7
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.7e-115 420.2 274 73.7
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 1.4e-114 417.2 300 66.7
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 3.9e-104 382.5 293 69.6
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 5.2e-101 372.1 284 62.7
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 3.7e-99 365.9 357 55.5
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 6.4e-99 365.2 302 68.5
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.2e-97 360.9 300 65.7
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.3e-96 357.5 336 54.5
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 3.3e-95 352.8 303 55.1
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.1e-94 350.1 302 54.0
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-93 347.8 303 54.5
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 1.2e-92 344.4 286 59.8
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 1.5e-92 344.0 291 54.0
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.3e-91 340.9 301 53.2
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 2.9e-91 339.7 300 54.0
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 3.8e-91 339.3 300 54.3
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.4e-90 336.7 302 54.3
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.4e-90 336.7 303 54.1
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 3.2e-90 336.3 302 52.6
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.1e-90 335.9 302 53.6
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.6e-89 334.0 303 52.8
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 1.6e-89 334.0 302 52.0
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.1e-89 333.6 304 53.3
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.1e-89 333.6 218 72.9
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 4.6e-89 332.4 302 52.0
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.0e-89 332.0 304 52.0
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 6.0e-89 332.0 303 52.8
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 2.3e-88 330.1 304 53.3
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 2.3e-88 330.1 304 53.3
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.9e-88 329.3 302 52.6
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 5.1e-88 328.9 304 52.3
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 6.6e-88 328.6 307 51.8
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 8.7e-88 328.2 302 53.0
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-87 327.8 304 52.6
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 3.3e-87 326.2 301 52.2
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 4.3e-87 325.9 301 50.8
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 1.2e-86 324.3 303 52.5
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.2e-86 324.3 300 51.7
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.8e-86 323.2 300 51.3
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 6.2e-86 322.0 272 54.8
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 1.8e-85 320.5 321 51.4
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 3.1e-85 319.7 303 52.1
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.1e-85 319.7 302 52.0
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 2.0e-84 317.0 303 51.2
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.0e-84 317.0 299 52.2
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 2.4e-82 310.1 304 50.3
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 1.7e-80 303.9 300 47.7
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 3.9e-80 302.8 246 69.5
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 5.6e-79 298.9 301 48.8
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.1e-78 295.0 282 50.0
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 1.1e-77 294.7 237 69.6
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 1.6e-73 280.8 303 48.5
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 1.0e-72 278.1 289 48.8
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.9e-71 273.9 280 49.3
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 7.4e-71 271.9 291 50.9
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 4.0e-69 266.2 349 40.1
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 3.8e-67 259.6 244 52.0
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.9e-56 223.0 219 50.2
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 1.1e-55 221.5 298 40.9
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 9.7e-55 218.4 204 52.5
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 9.7e-55 218.4 204 52.5
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 8.2e-54 215.3 259 49.4
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 9.4e-50 201.8 318 38.4
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.8e-40 171.0 128 56.2
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 1.3e-38 164.9 128 54.7
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 1.3e-38 164.9 128 54.7
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.0e-37 159.1 297 33.7
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 7.0e-37 159.1 148 52.0
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 9.4e-34 148.7 85 84.7
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-31 141.7 111 53.2
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-29 135.2 161 47.8
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 2.3e-24 117.5 94 63.8
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 1.7e-22 111.3 298 30.2
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 3.4e-15 87.0 58 74.1


User provided reference genes

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