Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 4.2e-127 458.0 226 100.0
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 1.3e-78 297.0 236 70.8
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 2.7e-65 252.7 235 60.4
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 6.0e-65 251.5 189 69.8
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 1.8e-64 250.0 236 60.2
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 3.0e-64 249.2 234 62.0
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 4.3e-63 245.4 189 68.3
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 3.1e-61 239.2 231 58.9
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 5.3e-61 238.4 239 58.6
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 2.6e-60 236.1 234 59.4
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 4.5e-60 235.3 237 56.5
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 5.8e-60 235.0 188 66.0
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 1.0e-59 234.2 188 68.1
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.3e-59 233.8 198 63.1
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 2.9e-59 232.6 189 65.1
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.9e-59 232.6 189 65.1
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 4.9e-59 231.9 236 56.4
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 4.9e-59 231.9 237 56.1
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.1e-58 230.7 189 64.6
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.1e-58 230.7 189 66.1
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 2.5e-58 229.6 194 61.3
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 2.1e-57 226.5 188 65.4
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 6.0e-57 224.9 238 53.4
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.0e-56 224.2 190 61.6
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 1.0e-56 224.2 188 65.4
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 1.3e-56 223.8 190 61.6
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.8e-56 223.4 186 64.5
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 3.9e-56 222.2 188 63.3
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 6.7e-56 221.5 188 63.8
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 8.7e-56 221.1 195 60.0
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 1.1e-55 220.7 190 63.2
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.5e-55 220.3 189 60.8
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.9e-55 219.9 188 63.8
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 1.9e-55 219.9 189 64.6
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 2.5e-55 219.5 189 60.3
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 3.3e-55 219.2 190 61.6
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 4.3e-55 218.8 231 54.5
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 7.4e-55 218.0 188 63.3
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 9.6e-55 217.6 189 60.3
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 1.3e-54 217.2 192 58.9
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 2.1e-54 216.5 191 58.6
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 2.8e-54 216.1 190 61.1
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 4.8e-54 215.3 189 59.3
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 6.3e-54 214.9 190 59.5
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 8.2e-54 214.5 189 59.8
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 1.4e-53 213.8 189 59.8
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 2.4e-53 213.0 237 53.6
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 2.4e-53 213.0 189 59.8
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 2.4e-53 213.0 191 58.6
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 3.1e-53 212.6 216 55.1
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 3.1e-53 212.6 190 60.0
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 5.3e-53 211.8 190 60.5
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 9.0e-53 211.1 190 59.5
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.2e-52 210.7 190 58.9
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 1.5e-52 210.3 188 59.0
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 2.0e-52 209.9 189 60.8
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 3.4e-52 209.1 188 59.6
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 4.5e-52 208.8 246 53.3
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 4.5e-52 208.8 190 58.4
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 4.5e-52 208.8 194 59.3
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 7.6e-52 208.0 192 60.9
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 1.3e-51 207.2 189 58.7
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 2.2e-51 206.5 186 58.6
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 8.4e-51 204.5 175 62.3
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.4e-50 203.8 193 57.5
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 5.5e-50 201.8 188 59.0
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 7.2e-50 201.4 189 56.6
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.2e-49 200.7 235 50.2
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 1.2e-49 200.7 193 56.5
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.6e-49 200.3 131 76.3
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 2.1e-49 199.9 212 57.1
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 2.1e-49 199.9 191 55.5
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 2.1e-49 199.9 191 55.5
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 4.6e-49 198.7 200 54.0
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.1e-49 198.4 186 57.0
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 6.1e-49 198.4 204 55.9
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 6.1e-49 198.4 190 56.8
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 6.1e-49 198.4 185 57.3
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 7.9e-49 198.0 189 55.0
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 1.8e-48 196.8 195 55.9
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.9e-48 195.7 186 56.5
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 5.1e-48 195.3 188 56.4
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 8.7e-48 194.5 235 48.5
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 8.7e-48 194.5 244 52.0
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.1e-47 194.1 188 55.9
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.1e-47 194.1 189 56.1
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.5e-47 193.7 189 56.1
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-47 193.0 199 53.3
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 2.5e-47 193.0 256 48.8
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 5.7e-47 191.8 203 53.7
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 9.7e-47 191.0 171 63.2
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 9.7e-47 191.0 189 54.0
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 1.6e-46 190.3 199 52.8
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-45 187.2 197 53.3
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 1.4e-45 187.2 197 53.3
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 1.5e-44 183.7 189 54.0
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 1.0e-43 181.0 189 52.9
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 3.6e-41 172.6 186 49.5
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 3.0e-40 169.5 184 50.5
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 8.5e-35 151.4 189 49.2
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 1.1e-34 151.0 174 47.7
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 1.2e-33 147.5 197 46.2
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 2.7e-33 146.4 192 43.8
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 2.7e-33 146.4 192 43.8
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 2.7e-33 146.4 192 43.8
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.7e-33 146.4 192 42.7
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.6e-33 146.0 196 43.4
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.1e-33 145.2 196 42.3
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 7.9e-33 144.8 189 47.1
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 7.9e-33 144.8 192 42.7
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 1.0e-32 144.4 192 43.8
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.4e-32 144.1 192 43.2
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.4e-32 144.1 189 41.3
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-32 143.7 197 42.1
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 1.8e-32 143.7 197 42.1
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.3e-32 143.3 192 43.2
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 3.9e-32 142.5 192 43.2
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 5.1e-32 142.1 191 42.4
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 6.7e-32 141.7 201 41.3
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 8.8e-32 141.4 189 41.8
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 8.8e-32 141.4 191 42.4
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.5e-31 140.6 192 43.2
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.5e-31 140.6 192 42.7
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.0e-31 140.2 189 41.3
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 2.6e-31 139.8 192 41.7
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.3e-31 139.4 192 42.2
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 7.4e-31 138.3 192 41.7
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.7e-30 137.1 189 40.7
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 2.2e-30 136.7 189 40.7
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 3.7e-30 136.0 187 41.2
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 3.7e-30 136.0 192 40.6
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 3.7e-30 136.0 192 40.6
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 3.7e-30 136.0 117 59.0
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.7e-30 136.0 192 41.7
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.8e-30 135.6 192 41.7
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 4.8e-30 135.6 192 41.7
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-29 134.4 192 41.7
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 1.1e-29 134.4 192 41.7
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-29 134.0 192 41.1
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-29 134.0 192 41.1
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 1.4e-29 134.0 192 41.1
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.8e-29 133.7 180 44.4
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 3.1e-29 132.9 189 46.6
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 7.0e-29 131.7 131 50.4
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 2.0e-28 130.2 184 40.2
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-28 130.2 184 40.2
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 2.6e-28 129.8 194 38.7
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 4.5e-28 129.0 186 38.2
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 2.2e-27 126.7 169 41.4
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 2.2e-27 126.7 190 39.5
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 1.9e-26 123.6 173 39.9
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 3.6e-25 119.4 135 44.4
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 4.1e-21 105.9 131 45.8
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 2.7e-17 93.2 155 36.8
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.8e-16 90.5 109 47.7
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 4.1e-13 79.3 176 31.8
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 8.5e-11 71.6 158 34.8
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 3.2e-10 69.7 48 70.8
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.2e-09 67.8 143 31.5
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 6.8e-08 62.0 211 28.4


User provided reference genes

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