Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 1.2e-43 179.5 91 100.0
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 1.0e-31 139.8 90 77.8
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.3e-31 139.4 89 77.5
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.3e-31 139.4 89 77.5
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 3.9e-31 137.9 89 77.5
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 1.1e-30 136.3 90 76.7
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 1.1e-30 136.3 90 75.6
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.5e-30 136.0 90 78.9
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 1.9e-30 135.6 87 74.7
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.5e-30 135.2 90 73.3
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 3.3e-30 134.8 85 75.3
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 4.3e-30 134.4 90 73.3
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 4.3e-30 134.4 90 74.4
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 4.3e-30 134.4 90 74.4
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 4.3e-30 134.4 90 74.4
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 5.6e-30 134.0 87 72.4
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 5.6e-30 134.0 87 72.4
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 5.6e-30 134.0 89 76.4
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 5.6e-30 134.0 85 76.5
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 7.4e-30 133.7 87 73.6
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 9.6e-30 133.3 87 75.9
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 1.3e-29 132.9 87 72.4
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.6e-29 132.5 85 76.5
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.6e-29 132.5 85 75.3
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 1.6e-29 132.5 89 70.8
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 2.8e-29 131.7 87 73.6
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 2.8e-29 131.7 86 72.1
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 2.8e-29 131.7 86 72.1
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 2.8e-29 131.7 87 72.4
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 2.8e-29 131.7 85 74.1
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 4.8e-29 131.0 85 75.3
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 4.8e-29 131.0 89 69.7
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 4.8e-29 131.0 89 69.7
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.1e-28 129.8 87 70.1
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 1.1e-28 129.8 90 73.3
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.1e-28 129.8 84 73.8
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 1.4e-28 129.4 85 72.9
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.4e-28 129.4 86 72.1
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 1.8e-28 129.0 85 75.3
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 2.4e-28 128.6 87 72.4
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 3.1e-28 128.3 87 72.4
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 3.1e-28 128.3 85 72.9
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 3.1e-28 128.3 86 70.9
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 4.0e-28 127.9 90 71.1
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 4.0e-28 127.9 90 71.1
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 4.0e-28 127.9 85 75.3
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 5.3e-28 127.5 79 81.0
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 6.9e-28 127.1 90 68.9
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 9.0e-28 126.7 90 68.9
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 1.2e-27 126.3 85 71.8
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 1.2e-27 126.3 85 70.6
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.5e-27 125.9 90 67.8
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.5e-27 125.9 89 71.9
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 2.0e-27 125.6 90 67.8
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 2.6e-27 125.2 90 68.9
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 2.6e-27 125.2 90 68.9
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 2.6e-27 125.2 90 68.9
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 2.6e-27 125.2 90 68.9
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 2.6e-27 125.2 85 72.9
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 3.4e-27 124.8 90 68.9
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 4.5e-27 124.4 89 67.4
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 4.5e-27 124.4 85 70.6
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 4.5e-27 124.4 87 70.1
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 4.5e-27 124.4 87 67.8
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 5.8e-27 124.0 87 70.1
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 7.6e-27 123.6 90 67.8
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 7.6e-27 123.6 90 67.8
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 7.6e-27 123.6 87 66.7
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 7.6e-27 123.6 90 67.8
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 1.0e-26 123.2 90 67.8
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 1.0e-26 123.2 85 69.4
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 1.3e-26 122.9 90 67.8
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.3e-26 122.9 85 70.6
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.3e-26 122.9 87 69.0
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 1.3e-26 122.9 87 69.0
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 1.3e-26 122.9 87 69.0
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 1.3e-26 122.9 87 72.4
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 1.7e-26 122.5 90 66.7
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.7e-26 122.5 87 69.0
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 1.7e-26 122.5 87 67.8
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 2.2e-26 122.1 90 66.7
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 2.2e-26 122.1 90 67.8
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 2.2e-26 122.1 92 68.5
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.9e-26 121.7 90 66.7
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 2.9e-26 121.7 87 66.7
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.8e-26 121.3 85 69.4
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 3.8e-26 121.3 90 66.7
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 3.8e-26 121.3 90 66.7
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 3.8e-26 121.3 90 66.7
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 3.8e-26 121.3 89 68.5
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 3.8e-26 121.3 85 68.2
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.9e-26 120.9 90 66.7
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 4.9e-26 120.9 89 66.3
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 6.5e-26 120.6 90 67.8
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 6.5e-26 120.6 87 66.7
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.5e-26 120.6 87 66.7
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 8.4e-26 120.2 90 66.7
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 8.4e-26 120.2 89 64.0
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 1.1e-25 119.8 87 64.4
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 1.1e-25 119.8 87 63.2
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.4e-25 119.4 90 65.6
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 1.4e-25 119.4 85 63.5
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 2.5e-25 118.6 85 67.1
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.5e-25 118.6 87 65.5
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 3.2e-25 118.2 89 65.2
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 4.2e-25 117.9 87 66.7
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 4.2e-25 117.9 90 61.1
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 5.5e-25 117.5 89 65.2
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 9.3e-25 116.7 87 65.5
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.2e-24 116.3 87 65.5
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.9e-24 113.6 87 63.2
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.3e-23 112.8 88 65.9
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.0e-23 111.7 87 63.2
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 5.1e-23 110.9 76 71.1
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 2.5e-22 108.6 87 62.1
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 7.4e-22 107.1 87 58.6
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 3.7e-21 104.8 71 69.0
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 1.4e-20 102.8 70 68.6
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 9.0e-20 100.1 85 57.6
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.2e-19 99.8 71 69.0
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 2.0e-19 99.0 70 70.0
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 4.5e-19 97.8 87 54.0
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 5.9e-19 97.4 62 80.6
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 7.6e-19 97.1 68 73.5
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.7e-18 95.9 86 53.5
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 8.5e-18 93.6 72 59.7
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 8.5e-18 93.6 72 61.1
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 1.6e-16 89.4 85 48.2
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 4.6e-16 87.8 65 64.6
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 4.6e-16 87.8 86 48.8
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 3.3e-14 81.6 85 45.9
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 5.7e-14 80.9 89 49.4
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 2.2e-13 79.0 98 45.9
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 1.4e-12 76.3 97 44.3
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 3.1e-12 75.1 99 42.4
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 5.0e-10 67.8 46 67.4
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 3.9e-07 58.2 40 75.0
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.1e-06 56.6 50 50.0
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 4.4e-06 54.7 40 70.0
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 4.4e-06 54.7 40 70.0
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 4.4e-06 54.7 80 38.8
TAR624G1239 Trochodendron aralioides HOM05D049658 ORTHO05D051498 5.7e-06 54.3 42 61.9
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 7.4e-06 53.9 41 61.0


User provided reference genes

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