Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A786T63 Lonicera japonica HOM05D001860 ORTHO05D004239 4.8e-85 317.8 158 100.0
Dinv34137 Davidia involucrata HOM05D001860 ORTHO05D004239 6.1e-48 194.5 112 82.1
vmacro01266 Vaccinium macrocarpon HOM05D001860 ORTHO05D004239 5.2e-47 191.4 112 80.4
Rhsim12G0064500 Rhododendron simsii HOM05D001860 ORTHO05D004239 1.2e-46 190.3 148 65.5
HanXRQChr17g0545271 Helianthus annuus HOM05D001860 ORTHO05D004239 1.3e-45 186.8 112 76.8
Actinidia33208 Actinidia chinensis HOM05D001860 ORTHO05D004239 8.3e-45 184.1 112 77.7
Hma1.2p1_1079F.1_g254980 Hydrangea macrophylla HOM05D001860 ORTHO05D004239 1.1e-44 183.7 108 78.7
HanXRQChr08g0210801 Helianthus annuus HOM05D001860 ORTHO05D004239 1.6e-43 179.9 112 74.1
Migut.L01274 Erythranthe guttata HOM05D001860 ORTHO05D004239 7.7e-43 177.6 106 77.4
Haze_11993 Corylus avellana HOM05D001860 ORTHO05D004239 1.0e-42 177.2 107 77.6
ECA246G2415 Erigeron canadensis HOM05D001860 ORTHO05D004239 1.0e-42 177.2 110 73.6
Peaxi162Scf00222g00063 Petunia axillaris HOM05D001860 ORTHO05D004239 1.3e-42 176.8 108 75.9
QL03p068530 Quercus lobata HOM05D001860 ORTHO05D004239 1.3e-42 176.8 109 75.2
Nitab4.5_0000040g0150 Nicotiana tabacum HOM05D001860 ORTHO05D004239 5.0e-42 174.9 109 77.1
Sopen05g003680 Solanum pennellii HOM05D001860 ORTHO05D004239 5.0e-42 174.9 108 75.9
PGSC0003DMG400018432 Solanum tuberosum HOM05D001860 ORTHO05D004239 5.0e-42 174.9 108 75.9
CAN.G1596.4 Capsicum annuum HOM05D001860 ORTHO05D004239 1.5e-41 173.3 108 75.9
Nitab4.5_0004623g0030 Nicotiana tabacum HOM05D001860 ORTHO05D004239 1.9e-41 172.9 109 76.1
Actinidia19882 Actinidia chinensis HOM05D001860 ORTHO05D004239 1.2e-40 170.2 112 71.4
MSTRG.714 Avicennia marina HOM05D001860 ORTHO05D004239 1.6e-40 169.9 106 73.6
Lsat_1_v5_gn_3_52080 Lactuca sativa HOM05D001860 ORTHO05D004239 1.6e-40 169.9 113 71.7
ECA233G2043 Erigeron canadensis HOM05D001860 ORTHO05D004239 2.1e-40 169.5 110 74.5
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.6e-40 168.7 112 73.2
Duzib268G0034 Durio zibethinus HOM05D001860 ORTHO05D004239 4.7e-40 168.3 109 71.6
Actinidia12295 Actinidia chinensis HOM05D001860 ORTHO05D004239 1.4e-39 166.8 106 75.5
Gohir.D13G076300 Gossypium hirsutum HOM05D001860 ORTHO05D004239 1.3e-37 160.2 107 68.2
Gohir.A13G076600 Gossypium hirsutum HOM05D001860 ORTHO05D004239 1.7e-37 159.8 107 67.3
Glyma.01G050400 Glycine max HOM05D001860 ORTHO05D004239 8.3e-37 157.5 107 67.3
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 8.3e-37 157.5 107 67.3
Lsat_1_v5_gn_3_52060 Lactuca sativa HOM05D001860 ORTHO05D004239 8.3e-37 157.5 100 73.0
MD16G1070500 Malus domestica HOM05D001860 ORTHO05D004239 8.3e-37 157.5 109 68.8
MD13G1070100 Malus domestica HOM05D001860 ORTHO05D004239 3.1e-36 155.6 107 69.2
arahy.Tifrunner.gnm1.ann1.A2Z21V Arachis hypogaea HOM05D001860 ORTHO05D004239 4.1e-36 155.2 111 64.0
arahy.Tifrunner.gnm1.ann1.RS14VD Arachis hypogaea HOM05D001860 ORTHO05D004239 7.0e-36 154.5 112 62.5
EL10Ac6g13235 Beta vulgaris HOM05D001860 ORTHO05D004239 1.2e-35 153.7 107 65.4
SGA_v2.0_scaffold172G38958 Striga asiatica HOM05D001860 ORTHO05D004239 1.2e-35 153.7 107 68.2
Prupe.1G276800 Prunus persica HOM05D001860 ORTHO05D004239 3.5e-35 152.1 107 67.3
Phvul.002G083400 Phaseolus vulgaris HOM05D001860 ORTHO05D004239 4.5e-35 151.8 107 64.5
AUR62032809 Chenopodium quinoa HOM05D001860 ORTHO05D004239 5.9e-35 151.4 107 63.6
Lj2g0002980 Lotus japonicus HOM05D001860 ORTHO05D004239 5.9e-35 151.4 108 66.7
Ciclev10031680m.g Citrus clementina HOM05D001860 ORTHO05D004239 7.7e-35 151.0 107 66.4
AUR62005815 Chenopodium quinoa HOM05D001860 ORTHO05D004239 1.3e-34 150.2 107 63.6
Eucgr.B03212 Eucalyptus grandis HOM05D001860 ORTHO05D004239 1.3e-34 150.2 111 67.6
Glyma.02G109200 Glycine max HOM05D001860 ORTHO05D004239 1.1e-33 147.1 107 63.6
ClCG05G024140 Citrullus lanatus HOM05D001860 ORTHO05D004239 7.3e-33 144.4 110 64.5
Oeu028274.1 Olea europaea HOM05D001860 ORTHO05D004239 9.5e-33 144.1 106 69.8
CsaV3_5G032880 Cucumis sativus L. HOM05D001860 ORTHO05D004239 1.6e-32 143.3 110 64.5
VMungo1215G3190 Vigna mungo HOM05D001860 ORTHO05D004239 2.1e-32 142.9 105 62.9
CANSAT64G2374 Cannabis sativa HOM05D001860 ORTHO05D004239 6.1e-32 141.4 107 63.6
Sc11g0002050 Simmondsia chinensis HOM05D001860 ORTHO05D004239 5.2e-31 138.3 107 62.6
Medtr5g041750 Medicago truncatula HOM05D001860 ORTHO05D004239 8.9e-31 137.5 110 60.9
TAR622G0370 Trochodendron aralioides HOM05D001860 ORTHO05D004239 8.9e-31 137.5 101 65.3
Ca_04821_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004239 2.0e-30 136.3 112 59.8
Hund25223 Selenicereus undatus HOM05D001860 ORTHO05D004239 4.4e-30 135.2 105 59.0
TAR315G0003 Trochodendron aralioides HOM05D001860 ORTHO05D004239 3.7e-29 132.1 108 60.2
Sed0006733 Sechium edule HOM05D001860 ORTHO05D004239 1.1e-28 130.6 106 62.3
PGR119G0060 Punica granatum HOM05D001860 ORTHO05D004239 1.8e-28 129.8 111 58.6
TWI75G1461 Tripterygium wilfordii HOM05D001860 ORTHO05D004239 7.0e-28 127.9 107 58.9
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.2e-28 127.5 107 59.8
Aqoxy3G03435 Aquilegia oxysepala HOM05D001860 ORTHO05D004239 2.0e-27 126.3 116 57.8
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.7e-27 125.9 107 58.9
TWI31G0976 Tripterygium wilfordii HOM05D001860 ORTHO05D004239 4.6e-27 125.2 107 58.9
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.0e-26 124.0 107 59.8
MBI05_g10767_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004239 1.0e-26 124.0 109 59.6
TWI79G1540 Tripterygium wilfordii HOM05D001860 ORTHO05D004239 1.7e-26 123.2 107 57.0
Cpa.g.sc350.3 Carica papaya HOM05D001860 ORTHO05D004239 5.0e-26 121.7 107 57.9
Thecc.02G343600 Theobroma cacao HOM05D001860 ORTHO05D004239 6.6e-26 121.3 109 56.0
Psat2g116800 Pisum sativum HOM05D001860 ORTHO05D004239 2.5e-25 119.4 109 57.8
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 7.3e-25 117.9 78 73.1
TPR.G39239 Trifolium pratense HOM05D001860 ORTHO05D004239 6.2e-24 114.8 127 50.4
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.0e-24 114.4 83 68.7
TAR374G0160 Trochodendron aralioides HOM05D000974 ORTHO05D004239 4.0e-23 112.1 102 57.8
Duzib251G0636 Durio zibethinus HOM05D001860 ORTHO05D004239 8.9e-23 110.9 107 55.1
ATR0564G267 Amborella trichopoda HOM05D001860 ORTHO05D004239 1.2e-22 110.5 106 54.7
Ah.03g134870 Amaranthus hybridus HOM05D001860 ORTHO05D004239 7.5e-22 107.8 71 69.0
THA.LOC104805168 Tarenaya hassleriana HOM05D001860 ORTHO05D004239 1.0e-18 97.4 116 46.6
MBI19_g24078_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004239 3.9e-18 95.5 102 54.9
Manes.05G104000 Manihot esculenta HOM05D001860 ORTHO05D004239 5.0e-18 95.1 109 51.4
TAR623G1369 Trochodendron aralioides HOM05D001860 ORTHO05D004239 1.5e-17 93.6 119 47.9
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 1.6e-16 90.1 104 49.0
Os10g0406200 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004239 3.1e-15 85.9 107 47.7
Duzib128G1505 Durio zibethinus HOM05D001860 ORTHO05D004239 6.8e-15 84.7 92 52.2
TAR369G0797 Trochodendron aralioides HOM05D001860 ORTHO05D004239 2.0e-14 83.2 106 45.3
Gohir.A11G239600 Gossypium hirsutum HOM05D001860 ORTHO05D004239 2.6e-14 82.8 92 53.3
Gorai.007G267000 Gossypium raimondii HOM05D001860 ORTHO05D004239 2.6e-14 82.8 92 53.3
Nn2g15907 Nelumbo nucifera HOM05D001860 ORTHO05D004239 3.4e-14 82.4 102 49.0
COL.COLO4_08624 Corchorus olitorius HOM05D001860 ORTHO05D004239 9.8e-14 80.9 106 47.2
Duzib106G1690 Durio zibethinus HOM05D001860 ORTHO05D004239 2.2e-13 79.7 101 47.5
SEGI_36747 Sequoiadendron giganteum HOM05D001860 ORTHO05D004239 2.2e-13 79.7 82 56.1
Gohir.D11G249300 Gossypium hirsutum HOM05D001860 ORTHO05D004239 2.9e-13 79.3 92 52.2
Atru.chr11.1761 Acer truncatum HOM05D001860 ORTHO05D004239 3.7e-13 79.0 78 53.8
Zm00001eb223270 Zea mays HOM05D001860 ORTHO05D004239 3.7e-13 79.0 118 44.9
Oeu055107.1 Olea europaea HOM05D001860 ORTHO05D004239 1.1e-12 77.4 120 43.3
Nn7g35793 Nelumbo nucifera HOM05D001860 ORTHO05D004239 1.9e-12 76.6 91 49.5
Thecc.05G258500 Theobroma cacao HOM05D001860 ORTHO05D004239 1.9e-12 76.6 101 48.5
Cpa.g.sc51.86 Carica papaya HOM05D001860 ORTHO05D004239 4.1e-12 75.5 121 38.0
Os03g0326300 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004239 5.4e-12 75.1 104 44.2
CDE07G1998 Ceratophyllum demersum HOM05D001860 ORTHO05D004239 1.2e-11 73.9 105 41.9
PSO339G1927 Papaver somniferum HOM05D001860 ORTHO05D004239 2.1e-11 73.2 104 44.2
TWI32G0146 Tripterygium wilfordii HOM05D001860 ORTHO05D004239 2.1e-11 73.2 112 42.9
CDE04G0155 Ceratophyllum demersum HOM05D001860 ORTHO05D004239 3.5e-11 72.4 122 38.5
Dinv14593 Davidia involucrata HOM05D001860 ORTHO05D004239 1.0e-10 70.9 88 48.9
Zm00001eb395410 Zea mays HOM05D001860 ORTHO05D004239 1.7e-10 70.1 107 40.2
DCAR_013696 Daucus carota HOM05D001860 ORTHO05D004239 6.6e-10 68.2 109 42.2
Sabra13G0053800 Salix brachista HOM05D001860 ORTHO05D004239 1.2e-08 63.9 85 44.7
Sabra19G0040800 Salix brachista HOM05D001860 ORTHO05D004239 1.2e-08 63.9 110 40.0
BcaB08g34374 Brassica carinata HOM05D001860 ORTHO05D004239 1.6e-08 63.5 53 62.3
Potri.019G032300 Populus trichocarpa HOM05D001860 ORTHO05D004239 1.6e-08 63.5 71 49.3
Lj2A356T44 Lonicera japonica HOM05D001860 ORTHO05D004239 4.7e-08 62.0 101 40.6
A09p62390 Brassica napus HOM05D001860 ORTHO05D004239 1.1e-07 60.8 108 37.0
Sp1g12520 Schrenkiella parvula HOM05D001860 ORTHO05D004239 1.1e-07 60.8 53 60.4
C08p45960 Brassica napus HOM05D001860 ORTHO05D004239 1.4e-07 60.5 53 58.5
BolC8t52147H Brassica oleracea HOM05D001860 ORTHO05D004239 1.4e-07 60.5 53 58.5
Nn3g17282 Nelumbo nucifera HOM05D001860 ORTHO05D004239 1.4e-07 60.5 52 51.9
Thhalv10008532m.g Eutrema salsugineum HOM05D001860 ORTHO05D004239 1.8e-07 60.1 53 60.4
BcaC07g41595 Brassica carinata HOM05D001860 ORTHO05D004239 2.3e-07 59.7 53 58.5
BraA09t41604Z Brassica rapa HOM05D001860 ORTHO05D004239 2.3e-07 59.7 53 58.5
BcaC07g41592 Brassica carinata HOM05D001860 ORTHO05D004239 3.1e-07 59.3 124 34.7
AL1G26050 Arabidopsis lyrata HOM05D001860 ORTHO05D004239 4.0e-07 58.9 53 58.5
Potri.013G060900 Populus trichocarpa HOM05D001860 ORTHO05D004239 4.0e-07 58.9 85 41.2
CARHR014580 Cardamine hirsuta HOM05D001860 ORTHO05D004239 6.8e-07 58.2 99 38.4
AT1G14180 Arabidopsis thaliana HOM05D001860 ORTHO05D004239 5.8e-06 55.1 53 56.6
Carub.0001s1385 Capsella rubella HOM05D001860 ORTHO05D004239 5.8e-06 55.1 52 57.7
Oeu021059.3 Olea europaea HOM05D001860 ORTHO05D004239 7.6e-06 54.7 65 47.7
unitig_747.g21181 Utricularia gibba HOM05D001860 ORTHO05D004239 9.9e-06 54.3 41 61.0


User provided reference genes

Program Settings