Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 1.1e-75 287.7 331 100.0
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 2.4e-62 243.4 331 92.1
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 3.1e-62 243.0 335 83.6
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 5.4e-62 242.3 331 92.7
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 5.4e-62 242.3 329 94.5
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.5e-61 239.2 324 94.1
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 5.9e-61 238.8 331 91.8
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.9e-60 236.5 323 93.5
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 3.8e-60 236.1 322 94.7
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.0e-60 235.7 322 93.5
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.1e-59 234.6 322 94.1
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 1.1e-59 234.6 331 91.2
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-59 234.6 322 93.5
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.1e-59 234.6 317 94.6
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.5e-59 234.2 331 91.8
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.5e-59 234.2 324 94.1
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.5e-59 234.2 322 93.8
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 1.5e-59 234.2 326 89.3
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.5e-59 233.4 336 82.4
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 2.5e-59 233.4 321 94.7
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 3.2e-59 233.0 325 92.6
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 3.2e-59 233.0 324 92.0
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 4.2e-59 232.6 321 91.3
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 5.5e-59 232.3 328 91.8
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 5.5e-59 232.3 322 94.4
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 5.5e-59 232.3 322 94.4
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.2e-58 231.1 332 91.9
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.2e-58 231.1 332 91.6
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.6e-58 230.7 329 92.7
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.6e-58 230.7 324 92.3
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 2.7e-58 229.9 324 92.0
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 3.6e-58 229.6 325 92.6
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 4.7e-58 229.2 333 90.7
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 6.1e-58 228.8 308 94.8
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 6.1e-58 228.8 327 92.7
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 8.0e-58 228.4 325 92.0
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 1.4e-57 227.6 321 94.1
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.4e-57 227.6 322 92.2
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.8e-57 227.3 331 88.8
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.3e-57 226.9 308 94.5
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.3e-57 226.9 325 90.5
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 3.0e-57 226.5 324 91.4
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 4.0e-57 226.1 324 92.0
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 4.0e-57 226.1 308 94.2
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 4.0e-57 226.1 322 91.3
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 6.8e-57 225.3 325 89.8
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 6.8e-57 225.3 326 91.7
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 8.8e-57 224.9 324 91.7
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.2e-56 224.6 323 91.6
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 1.2e-56 224.6 322 91.0
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 1.5e-56 224.2 321 92.8
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.5e-56 224.2 308 93.8
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 2.0e-56 223.8 320 92.8
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 2.0e-56 223.8 320 92.8
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 2.0e-56 223.8 324 91.0
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 2.0e-56 223.8 324 91.0
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 2.6e-56 223.4 328 90.5
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 2.6e-56 223.4 325 89.8
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 3.4e-56 223.0 325 90.2
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 3.4e-56 223.0 326 90.2
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 4.4e-56 222.6 324 92.0
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 5.7e-56 222.2 325 91.7
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 5.7e-56 222.2 308 95.1
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 7.5e-56 221.9 308 94.5
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.8e-56 221.5 308 92.5
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.3e-55 221.1 324 78.4
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 1.3e-55 221.1 308 92.2
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.3e-55 221.1 324 91.4
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.3e-55 221.1 318 89.6
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.7e-55 220.7 322 89.1
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 2.2e-55 220.3 318 90.9
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.2e-55 220.3 351 68.1
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 2.8e-55 219.9 326 90.5
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.7e-55 219.5 311 93.9
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 4.9e-55 219.2 321 93.5
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 6.3e-55 218.8 318 91.8
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 6.3e-55 218.8 318 91.8
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.8e-54 217.2 322 92.2
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 5.4e-54 215.7 339 63.1
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 9.2e-54 214.9 299 96.0
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 9.2e-54 214.9 320 88.8
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 3.5e-53 213.0 319 91.5
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.5e-53 213.0 308 93.8
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.3e-52 211.1 310 91.9
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.3e-52 211.1 313 92.7
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 5.0e-52 209.1 247 89.1
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 5.0e-52 209.1 323 90.4
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 6.6e-52 208.8 310 92.6
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 6.6e-52 208.8 332 87.0
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.1e-51 208.0 322 90.1
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.1e-51 208.0 310 92.3
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.1e-51 208.0 363 68.6
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 1.5e-51 207.6 310 92.6
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 1.5e-51 207.6 310 92.6
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.9e-51 207.2 318 89.6
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 2.5e-51 206.8 323 90.4
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.5e-51 206.8 323 89.8
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 3.3e-51 206.5 317 90.5
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 4.3e-51 206.1 310 92.3
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 5.6e-51 205.7 320 89.4
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 7.3e-51 205.3 320 89.1
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.2e-50 204.5 334 72.5
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.6e-50 204.1 296 93.6
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.8e-50 203.4 314 90.1
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 3.6e-50 203.0 320 89.1
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 4.7e-50 202.6 247 89.9
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 6.1e-50 202.2 248 89.1
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 8.0e-50 201.8 343 85.7
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.4e-49 201.1 324 88.9
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 2.3e-49 200.3 324 89.2
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.3e-49 200.3 320 87.5
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 3.0e-49 199.9 321 89.4
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 6.8e-49 198.7 325 88.6
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 6.8e-49 198.7 324 88.6
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 8.9e-49 198.4 343 77.8
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 2.0e-48 197.2 326 75.2
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 2.6e-48 196.8 332 76.2
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 2.6e-48 196.8 322 90.1
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 4.9e-47 192.6 325 88.0
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.4e-46 191.0 342 83.6
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.4e-46 191.0 318 86.5
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.4e-46 191.0 318 86.5
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 3.2e-46 189.9 343 71.4
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 4.1e-46 189.5 329 86.6
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.2e-46 188.3 308 83.1
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.2e-46 188.3 308 83.1
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 2.7e-45 186.8 328 85.7
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.7e-45 186.8 340 75.9
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 5.9e-45 185.7 102 87.3
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 5.9e-45 185.7 102 87.3
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.7e-44 184.1 329 86.3
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 3.0e-44 183.3 314 88.9
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.9e-44 183.0 329 83.0
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 5.0e-44 182.6 326 86.5
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 1.1e-43 181.4 245 69.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 9.5e-43 178.3 244 87.3
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 9.5e-43 178.3 333 71.5
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.6e-42 177.6 98 86.7
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 1.4e-41 174.5 84 95.2
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.3e-41 173.7 329 81.5
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.3e-41 173.7 93 89.2
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 3.1e-41 173.3 97 85.6
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 6.8e-41 172.2 222 93.7
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 8.9e-41 171.8 325 82.2
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 8.9e-41 171.8 329 80.5
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.5e-40 171.0 93 89.2
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 2.0e-40 170.6 97 85.6
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 2.0e-40 170.6 97 85.6
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 5.8e-40 169.1 329 82.4
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 3.2e-38 163.3 311 53.1
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 3.2e-38 163.3 97 79.4
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 9.2e-38 161.8 88 86.4
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 9.2e-38 161.8 95 85.3
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 2.3e-36 157.1 251 80.1
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 6.2e-34 149.1 255 78.8
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 5.4e-30 136.0 73 84.9
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 9.2e-30 135.2 78 85.9
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.1e-29 134.0 278 83.1
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 3.5e-29 133.3 104 61.5
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 7.8e-29 132.1 306 79.4
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.3e-28 131.3 325 76.0
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 6.0e-21 105.9 252 73.0
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.7e-20 104.4 120 94.2
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.3e-20 104.0 73 71.2
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.9e-20 103.2 65 76.9
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 2.5e-19 100.5 120 60.0
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 3.6e-18 96.7 50 84.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 5.2e-17 92.8 64 62.5
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 6.9e-17 92.4 91 49.5
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.2e-16 91.7 256 87.9
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 4.2e-14 83.2 77 54.5
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 6.0e-13 79.3 48 81.2
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 1.0e-12 78.6 43 81.4
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 2.3e-12 77.4 41 90.2
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 2.5e-11 73.9 41 90.2
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 2.1e-10 70.9 41 87.8
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 1.4e-09 68.2 84 50.0
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 1.2e-08 65.1 84 47.6
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 4.5e-08 63.2 40 75.0
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 6.4e-07 59.3 43 72.1


User provided reference genes

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