Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 6.4e-131 470.7 228 100.0
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 3.8e-115 418.3 224 86.6
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 8.4e-115 417.2 221 88.2
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 1.4e-114 416.4 221 86.9
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 1.6e-113 412.9 220 87.3
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.5e-113 411.8 221 86.0
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 4.6e-113 411.4 221 86.0
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 6.0e-113 411.0 221 86.4
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 7.8e-113 410.6 223 85.7
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 7.8e-113 410.6 218 85.8
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 2.3e-112 409.1 222 84.2
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 3.0e-112 408.7 223 85.2
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.0e-112 408.7 221 86.0
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 3.9e-112 408.3 221 85.5
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 5.1e-112 407.9 224 84.8
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 6.6e-112 407.5 221 85.1
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 6.6e-112 407.5 223 85.2
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 8.7e-112 407.1 216 87.0
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 8.7e-112 407.1 219 84.0
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 8.7e-112 407.1 223 84.8
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 1.1e-111 406.8 221 85.1
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.1e-111 406.8 224 83.5
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 2.5e-111 405.6 221 85.1
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 2.5e-111 405.6 224 83.5
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 2.5e-111 405.6 216 88.9
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 2.5e-111 405.6 221 84.6
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.3e-111 405.2 223 84.3
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 4.3e-111 404.8 221 85.1
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 7.3e-111 404.1 218 86.2
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 7.3e-111 404.1 224 83.5
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 9.6e-111 403.7 219 85.4
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.6e-110 402.9 225 82.7
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.1e-110 402.5 221 84.2
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 2.1e-110 402.5 221 83.7
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 2.1e-110 402.5 222 83.3
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 2.8e-110 402.1 221 85.1
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.6e-110 401.7 221 85.1
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 3.6e-110 401.7 222 83.3
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 4.8e-110 401.4 218 85.8
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 4.8e-110 401.4 222 83.3
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 6.2e-110 401.0 223 83.4
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 8.1e-110 400.6 218 85.3
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 8.1e-110 400.6 213 87.3
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 8.1e-110 400.6 224 83.0
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.1e-109 400.2 220 85.0
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 1.4e-109 399.8 223 82.5
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 1.4e-109 399.8 218 84.9
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 1.4e-109 399.8 218 85.3
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.8e-109 399.4 220 85.0
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 2.4e-109 399.1 221 84.2
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 2.4e-109 399.1 221 84.6
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 3.1e-109 398.7 218 84.9
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 3.1e-109 398.7 222 81.1
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 5.3e-109 397.9 216 84.7
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 5.3e-109 397.9 221 84.6
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 6.9e-109 397.5 217 85.7
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 6.9e-109 397.5 221 84.2
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 6.9e-109 397.5 218 85.8
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 6.9e-109 397.5 222 83.8
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 9.0e-109 397.1 218 84.9
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 9.0e-109 397.1 218 83.9
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 9.0e-109 397.1 224 80.8
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.2e-108 396.7 225 83.1
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.2e-108 396.7 234 80.8
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.5e-108 396.4 218 83.5
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 1.5e-108 396.4 221 84.2
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 2.0e-108 396.0 218 84.9
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 2.0e-108 396.0 248 77.0
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.4e-108 394.8 218 83.5
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 5.8e-108 394.4 218 84.9
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 9.9e-108 393.7 218 83.5
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.3e-107 393.3 219 83.1
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 1.3e-107 393.3 207 87.9
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 1.7e-107 392.9 221 82.4
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 2.2e-107 392.5 221 83.7
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 2.9e-107 392.1 221 83.3
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 2.9e-107 392.1 215 87.0
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 6.4e-107 391.0 219 82.2
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 6.4e-107 391.0 220 83.6
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 6.4e-107 391.0 251 74.9
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 8.4e-107 390.6 216 83.3
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.1e-106 390.2 216 83.3
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 1.1e-106 390.2 216 82.9
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.1e-106 390.2 207 87.0
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 1.1e-106 390.2 218 83.5
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 1.4e-106 389.8 216 83.8
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.4e-106 389.8 218 82.6
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 1.9e-106 389.4 216 82.4
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 1.9e-106 389.4 216 82.9
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 2.4e-106 389.0 216 82.4
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 2.4e-106 389.0 216 82.4
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 2.4e-106 389.0 216 82.4
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 2.4e-106 389.0 221 83.7
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 7.1e-106 387.5 216 82.4
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 7.1e-106 387.5 216 83.3
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 1.2e-105 386.7 221 82.8
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 2.1e-105 386.0 216 82.4
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 4.6e-105 384.8 216 82.4
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 7.8e-105 384.0 218 81.7
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 1.0e-104 383.6 218 80.7
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 2.3e-104 382.5 219 79.0
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 3.0e-104 382.1 216 81.9
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 3.0e-104 382.1 216 81.9
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 3.9e-104 381.7 216 82.4
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 5.1e-104 381.3 218 82.1
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 5.1e-104 381.3 216 81.5
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 6.6e-104 380.9 220 78.2
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 6.6e-104 380.9 219 80.4
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 1.1e-103 380.2 218 80.7
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.1e-103 380.2 220 78.2
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 1.5e-103 379.8 221 81.0
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 3.3e-103 378.6 218 80.3
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.8e-102 375.6 273 67.8
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 3.6e-102 375.2 218 79.8
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 3.1e-101 372.1 215 79.5
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.2e-100 370.2 218 80.7
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 3.5e-97 358.6 204 81.9
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 3.7e-94 348.6 219 69.9
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 5.8e-92 341.3 222 73.9
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 3.0e-88 328.9 218 69.7
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 7.4e-87 324.3 219 67.6
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 2.4e-85 319.3 213 66.7
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 3.2e-82 308.9 219 63.9
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 2.2e-78 296.2 164 87.2
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 1.8e-77 293.1 158 86.7
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.7e-75 286.6 153 85.0
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 6.5e-75 284.6 169 75.1
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 2.8e-70 269.2 217 57.6
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 4.1e-69 265.4 160 72.5
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.3e-64 249.6 159 72.3
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 1.3e-62 243.8 128 83.6
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 1.5e-60 236.9 214 55.6
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 1.7e-59 233.4 210 55.7
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 2.1e-57 226.5 129 79.8
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 2.8e-54 216.1 151 74.2
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 3.5e-52 209.1 111 89.2
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 5.9e-52 208.4 209 47.4
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 4.0e-48 195.7 112 75.9
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 4.4e-47 192.2 112 75.9
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.5e-42 176.4 130 58.5
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 6.8e-40 168.3 87 80.5
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 5.4e-37 158.7 102 74.5
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 8.0e-33 144.8 219 36.1
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 2.3e-32 143.3 97 75.3
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 1.2e-28 131.0 134 49.3
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.7e-28 129.8 74 83.8
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.3e-27 126.7 67 85.1
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.9e-27 126.3 78 84.6
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 8.6e-27 124.8 61 91.8
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 9.5e-26 121.3 74 74.3
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 8.3e-22 108.2 64 70.3
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 1.2e-20 104.4 54 85.2
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 2.3e-19 100.1 58 84.5
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 3.0e-19 99.8 64 78.1
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.9e-18 97.1 64 73.4
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 2.5e-18 96.7 58 81.0
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 1.1e-16 91.3 58 77.6
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.9e-14 83.2 124 45.2
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 1.1e-13 81.3 100 45.0
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 5.4e-13 79.0 54 75.9
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.7e-12 76.6 51 72.5
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 1.6e-09 67.4 54 59.3
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 2.0e-07 60.5 37 83.8
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 3.7e-06 56.2 35 74.3


User provided reference genes

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