Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A764T53 Lonicera japonica HOM05D003846 ORTHO05D004726 6.3e-76 287.3 143 100.0
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 1.6e-50 203.0 134 72.4
TAR622G0464 Trochodendron aralioides HOM05D003846 ORTHO05D004726 4.5e-50 201.4 134 71.6
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 7.7e-50 200.7 136 72.8
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 7.7e-50 200.7 134 72.4
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 1.3e-49 199.9 134 70.9
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 1.7e-49 199.5 134 71.6
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 6.5e-49 197.6 134 68.7
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 8.5e-49 197.2 135 71.1
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 1.9e-48 196.1 134 70.9
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 4.2e-48 194.9 134 67.2
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 5.5e-48 194.5 134 67.9
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 5.5e-48 194.5 136 69.1
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 7.2e-48 194.1 134 69.4
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 9.4e-48 193.7 134 67.2
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 1.2e-47 193.4 134 70.1
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 1.2e-47 193.4 136 67.6
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 1.2e-47 193.4 134 70.1
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 1.6e-47 193.0 134 69.4
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 2.1e-47 192.6 134 67.2
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 2.1e-47 192.6 134 68.7
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 2.7e-47 192.2 134 71.6
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 2.7e-47 192.2 134 67.9
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 3.6e-47 191.8 134 67.2
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 3.6e-47 191.8 134 70.9
Psat2g088560 Pisum sativum HOM05D003846 ORTHO05D004726 3.6e-47 191.8 134 69.4
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 4.7e-47 191.4 134 69.4
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 6.1e-47 191.0 134 70.9
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 6.1e-47 191.0 134 67.9
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 6.1e-47 191.0 134 67.9
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 8.0e-47 190.7 134 70.1
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 8.0e-47 190.7 134 70.1
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 8.0e-47 190.7 140 69.3
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 8.0e-47 190.7 134 68.7
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 1.0e-46 190.3 124 73.4
PSO063G1115 Papaver somniferum HOM05D003846 ORTHO05D004726 1.0e-46 190.3 134 68.7
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 1.4e-46 189.9 134 69.4
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 3.0e-46 188.7 133 69.2
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 4.0e-46 188.3 134 65.7
CANSAT64G1970 Cannabis sativa HOM05D003846 ORTHO05D004726 5.2e-46 188.0 134 67.2
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 6.8e-46 187.6 134 68.7
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 6.8e-46 187.6 135 68.1
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 8.8e-46 187.2 133 65.4
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 1.2e-45 186.8 133 68.4
PSO782G3649 Papaver somniferum HOM05D003846 ORTHO05D004726 1.2e-45 186.8 134 68.7
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 1.2e-45 186.8 134 66.4
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 1.5e-45 186.4 127 67.7
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 1.5e-45 186.4 134 67.2
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 1.5e-45 186.4 123 73.2
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 2.0e-45 186.0 134 67.2
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 2.6e-45 185.7 133 67.7
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 3.4e-45 185.3 134 67.2
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 3.4e-45 185.3 134 67.2
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 3.4e-45 185.3 133 65.4
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 4.4e-45 184.9 117 75.2
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 5.7e-45 184.5 132 68.2
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 5.7e-45 184.5 134 65.7
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 5.7e-45 184.5 134 66.4
Lj9A429T51 Lonicera japonica HOM05D003846 ORTHO05D004726 5.7e-45 184.5 143 65.7
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 9.8e-45 183.7 134 64.9
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 9.8e-45 183.7 124 70.2
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 9.8e-45 183.7 134 67.9
Atru.chr11.1333 Acer truncatum HOM05D003846 ORTHO05D004726 1.3e-44 183.3 134 67.2
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 1.3e-44 183.3 139 64.7
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 1.7e-44 183.0 133 69.2
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 1.7e-44 183.0 139 64.7
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 1.7e-44 183.0 139 64.7
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 2.2e-44 182.6 135 68.1
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 2.2e-44 182.6 139 64.7
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 2.8e-44 182.2 134 65.7
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 2.8e-44 182.2 124 69.4
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 2.8e-44 182.2 133 68.4
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 3.7e-44 181.8 134 66.4
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 3.7e-44 181.8 133 68.4
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 4.8e-44 181.4 124 68.5
RcHm_v2.0_Chr7g0184811 Rosa chinensis HOM05D003846 ORTHO05D004726 4.8e-44 181.4 135 65.9
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 6.3e-44 181.0 134 64.9
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 6.3e-44 181.0 124 69.4
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 6.3e-44 181.0 134 66.4
Prupe.5G218600 Prunus persica HOM05D003846 ORTHO05D004726 6.3e-44 181.0 135 66.7
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 8.3e-44 180.6 135 65.2
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 1.1e-43 180.3 134 65.7
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 1.4e-43 179.9 135 65.2
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 1.4e-43 179.9 135 65.2
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 1.8e-43 179.5 134 66.4
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 1.8e-43 179.5 139 64.0
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 2.4e-43 179.1 135 64.4
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 3.1e-43 178.7 139 63.3
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 3.1e-43 178.7 117 72.6
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 3.1e-43 178.7 135 65.2
SEGI_01063 Sequoiadendron giganteum HOM05D003846 ORTHO05D004726 3.1e-43 178.7 139 63.3
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 4.1e-43 178.3 134 65.7
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 4.1e-43 178.3 117 72.6
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 4.1e-43 178.3 124 70.2
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 4.1e-43 178.3 117 72.6
arahy.Tifrunner.gnm1.ann1.6C9V7B Arachis hypogaea HOM05D003846 ORTHO05D004726 5.4e-43 177.9 133 66.9
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 5.4e-43 177.9 133 66.2
HPP92_016307 Vanilla planifolia HOM05D003846 ORTHO05D004726 5.4e-43 177.9 135 65.9
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 5.4e-43 177.9 135 65.2
FvH4_5g12540 Fragaria vesca HOM05D003846 ORTHO05D004726 7.0e-43 177.6 123 68.3
FAN04G0089 Fragaria x ananassa HOM05D003846 ORTHO05D004726 7.0e-43 177.6 123 68.3
FAN13G1296 Fragaria x ananassa HOM05D003846 ORTHO05D004726 7.0e-43 177.6 123 68.3
FAN18G2095 Fragaria x ananassa HOM05D003846 ORTHO05D004726 7.0e-43 177.6 123 68.3
FAN18G2723 Fragaria x ananassa HOM05D003846 ORTHO05D004726 7.0e-43 177.6 123 68.3
AUR62002909 Chenopodium quinoa HOM05D003846 ORTHO05D004726 9.1e-43 177.2 134 65.7
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 9.1e-43 177.2 134 65.7
FAN08G1200 Fragaria x ananassa HOM05D003846 ORTHO05D004726 9.1e-43 177.2 123 67.5
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 9.1e-43 177.2 121 70.2
HPP92_016288 Vanilla planifolia HOM05D003846 ORTHO05D004726 9.1e-43 177.2 135 65.9
AUR62035268 Chenopodium quinoa HOM05D003846 ORTHO05D004726 1.2e-42 176.8 133 66.2
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 2.0e-42 176.0 133 63.9
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 2.0e-42 176.0 133 63.9
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 2.0e-42 176.0 122 70.5
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 2.0e-42 176.0 122 70.5
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 2.0e-42 176.0 129 66.7
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 4.5e-42 174.9 132 65.2
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 4.5e-42 174.9 135 63.7
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 4.5e-42 174.9 122 68.9
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 4.5e-42 174.9 143 61.5
RcHm_v2.0_Chr4g0435651 Rosa chinensis HOM05D003846 ORTHO05D004726 4.5e-42 174.9 134 64.2
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 5.9e-42 174.5 132 65.9
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 1.0e-41 173.7 117 69.2
MD14G1223300 Malus domestica HOM05D003846 ORTHO05D004726 1.3e-41 173.3 122 67.2
EL10Ac6g14463 Beta vulgaris HOM05D003846 ORTHO05D004726 2.3e-41 172.6 135 63.7
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 3.8e-41 171.8 129 64.3
Sed0022338 Sechium edule HOM05D003846 ORTHO05D004726 3.8e-41 171.8 125 66.4
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 3.8e-41 171.8 124 66.1
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 3.8e-41 171.8 135 61.5
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 1.1e-40 170.2 121 70.2
CDE11G1133 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 1.5e-40 169.9 136 64.7
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 1.5e-40 169.9 117 67.5
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 1.5e-40 169.9 122 68.9
Psat1g039320 Pisum sativum HOM05D003846 ORTHO05D004726 2.5e-40 169.1 122 68.0
Ah.03g137840 Amaranthus hybridus HOM05D003846 ORTHO05D004726 3.3e-40 168.7 135 63.0
Sed0009794 Sechium edule HOM05D003846 ORTHO05D004726 3.3e-40 168.7 134 63.4
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 1.2e-39 166.8 114 70.2
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 2.1e-39 166.0 124 65.3
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 2.1e-39 166.0 124 65.3
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 2.8e-39 165.6 135 62.2
Rhsim12G0144000 Rhododendron simsii HOM05D003846 ORTHO05D004726 2.8e-39 165.6 123 65.9
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 8.0e-39 164.1 108 71.3
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 1.4e-38 163.3 141 58.9
Medtr6g085050 Medicago truncatula HOM05D003846 ORTHO05D004726 1.4e-38 163.3 122 67.2
Hund25092 Selenicereus undatus HOM05D003846 ORTHO05D004726 1.8e-38 162.9 134 61.9
SGA_v2.0_scaffold63G21786 Striga asiatica HOM05D003846 ORTHO05D004726 1.8e-38 162.9 119 63.9
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 3.0e-38 162.2 134 59.0
BcaC08g45948 Brassica carinata HOM05D003846 ORTHO05D004726 1.2e-37 160.2 124 62.9
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 1.5e-37 159.8 134 59.0
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 4.4e-37 158.3 113 68.1
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 7.5e-37 157.5 110 69.1
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 4.9e-36 154.8 115 64.3
Pp3c10_21560 Physcomitrium patens HOM05D003846 ORTHO05D004726 3.1e-35 152.1 114 61.4
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 4.1e-35 151.8 188 46.3
Pp3c20_21920 Physcomitrium patens HOM05D003846 ORTHO05D004726 2.9e-33 145.6 111 58.6
CBR_g40856 Chara braunii HOM05D003846 ORTHO05D004726 2.8e-31 139.0 123 56.1
GSVIVG01011936001 Vitis vinifera HOM05D003846 ORTHO05D004726 1.4e-30 136.7 135 54.8
Sed0007398 Sechium edule HOM05D003846 ORTHO05D004726 1.8e-30 136.3 85 75.3
DCAR_011545 Daucus carota HOM05D003846 ORTHO05D004726 1.6e-26 123.2 78 73.1
Lj6A762T41 Lonicera japonica HOM05D003846 ORTHO05D004726 5.6e-24 114.8 56 100.0
PRCOL_00003868 Prasinoderma coloniale HOM05D003846 ORTHO05D004726 7.3e-24 114.4 115 49.6
HPP92_027194 Vanilla planifolia HOM05D003846 ORTHO05D004726 1.1e-22 110.5 78 66.7
Manes.11G040441 Manihot esculenta HOM05D000085 ORTHO05D249439 1.2e-21 107.1 93 55.9
Manes.11G039928 Manihot esculenta HOM05D000085 ORTHO05D250131 2.6e-21 105.9 112 49.1
Manes.11G040408 Manihot esculenta HOM05D003846 ORTHO05D004726 1.3e-20 103.6 87 56.3
Lsat_1_v5_gn_4_145001 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-19 100.5 79 62.0
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.3e-17 93.6 98 52.0
Cre17.g696400 Chlamydomonas reinhardtii HOM05D003846 ORTHO05D004726 8.6e-17 90.9 123 40.7
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 3.3e-16 89.0 84 54.8
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 3.3e-16 89.0 84 54.8
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 5.6e-16 88.2 89 51.7
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 5.6e-16 88.2 89 51.7
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 3.1e-14 82.4 55 69.1
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 4.0e-14 82.0 66 60.6
TPR.G20310 Trifolium pratense HOM05D003846 ORTHO05D004726 5.8e-13 78.2 49 73.5
CDE05G0888 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 9.9e-13 77.4 119 40.3
Nn4g23759 Nelumbo nucifera HOM05D003846 ORTHO05D004726 4.6e-10 68.6 51 62.7
Aa31sc562G10 Aethionema arabicum HOM05D003846 ORTHO05D004726 2.3e-09 66.2 129 31.8
AUR62007022 Chenopodium quinoa HOM05D008627 ORTHO05D010841 1.9e-08 63.2 138 31.2
CsaV3_5G034070 Cucumis sativus L. HOM05D000040 ORTHO05D000759 3.3e-08 62.4 57 57.9
EL10Ac9g22891 Beta vulgaris HOM05D008627 ORTHO05D010841 7.3e-08 61.2 137 30.7
CBR_g23395 Chara braunii HOM05D008627 ORTHO05D010841 7.3e-08 61.2 127 32.3
AUR62017639 Chenopodium quinoa HOM05D008627 ORTHO05D010841 2.1e-07 59.7 119 31.1
FAN12G0550 Fragaria x ananassa HOM05D003846 ORTHO05D004726 3.1e-06 55.8 61 54.1
MBI03_g05119_MAGBIO Magnolia biondii HOM05D008627 ORTHO05D010841 3.1e-06 55.8 118 31.4
Potri.008G145500 Populus trichocarpa HOM05D008627 ORTHO05D010841 3.1e-06 55.8 129 31.0
ECA246G0765 Erigeron canadensis HOM05D008627 ORTHO05D010841 6.8e-06 54.7 118 28.8


User provided reference genes

Program Settings