Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A762T41 Lonicera japonica HOM05D003846 ORTHO05D004726 1.7e-24 115.2 56 100.0
Lj6A764T53 Lonicera japonica HOM05D003846 ORTHO05D004726 1.7e-24 115.2 56 100.0
Lj9A429T51 Lonicera japonica HOM05D003846 ORTHO05D004726 6.1e-19 96.7 55 81.8
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 1.4e-18 95.5 55 80.0
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 2.3e-18 94.7 55 80.0
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 3.1e-18 94.4 55 78.2
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 3.1e-18 94.4 55 80.0
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 3.1e-18 94.4 55 80.0
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 3.1e-18 94.4 55 80.0
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 4.0e-18 94.0 55 80.0
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 4.0e-18 94.0 55 80.0
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 4.0e-18 94.0 55 80.0
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 4.0e-18 94.0 55 80.0
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 4.0e-18 94.0 55 80.0
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 5.2e-18 93.6 55 80.0
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 5.2e-18 93.6 55 80.0
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 5.2e-18 93.6 55 80.0
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 5.2e-18 93.6 55 78.2
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 6.8e-18 93.2 55 78.2
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 8.9e-18 92.8 54 79.6
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 8.9e-18 92.8 55 78.2
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 8.9e-18 92.8 55 78.2
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 8.9e-18 92.8 55 78.2
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 8.9e-18 92.8 55 78.2
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 8.9e-18 92.8 55 78.2
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 8.9e-18 92.8 55 78.2
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 8.9e-18 92.8 55 78.2
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 8.9e-18 92.8 55 78.2
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 8.9e-18 92.8 55 78.2
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 8.9e-18 92.8 55 80.0
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 8.9e-18 92.8 55 78.2
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 1.2e-17 92.4 55 78.2
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 1.5e-17 92.0 55 78.2
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 2.0e-17 91.7 55 76.4
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 2.0e-17 91.7 55 76.4
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 2.0e-17 91.7 55 76.4
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 2.0e-17 91.7 55 76.4
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 2.0e-17 91.7 55 76.4
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 2.6e-17 91.3 55 76.4
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 2.6e-17 91.3 55 76.4
Sed0007398 Sechium edule HOM05D003846 ORTHO05D004726 2.6e-17 91.3 55 76.4
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 2.6e-17 91.3 55 78.2
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 2.6e-17 91.3 55 76.4
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 3.4e-17 90.9 54 79.6
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 3.4e-17 90.9 55 76.4
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 3.4e-17 90.9 55 76.4
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 3.4e-17 90.9 55 76.4
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 3.4e-17 90.9 55 76.4
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 3.4e-17 90.9 55 76.4
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 3.4e-17 90.9 55 76.4
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 3.4e-17 90.9 54 77.8
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 4.4e-17 90.5 55 76.4
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 5.8e-17 90.1 54 77.8
CANSAT64G1970 Cannabis sativa HOM05D003846 ORTHO05D004726 5.8e-17 90.1 55 76.4
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 5.8e-17 90.1 55 74.5
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 5.8e-17 90.1 55 74.5
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 5.8e-17 90.1 55 74.5
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 5.8e-17 90.1 55 74.5
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 5.8e-17 90.1 54 77.8
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 7.5e-17 89.7 54 77.8
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 7.5e-17 89.7 55 74.5
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 7.5e-17 89.7 55 74.5
TAR622G0464 Trochodendron aralioides HOM05D003846 ORTHO05D004726 7.5e-17 89.7 55 76.4
HPP92_016288 Vanilla planifolia HOM05D003846 ORTHO05D004726 7.5e-17 89.7 55 74.5
HPP92_016307 Vanilla planifolia HOM05D003846 ORTHO05D004726 7.5e-17 89.7 55 74.5
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 9.8e-17 89.4 54 75.9
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 9.8e-17 89.4 54 75.9
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 9.8e-17 89.4 55 74.5
Atru.chr11.1333 Acer truncatum HOM05D003846 ORTHO05D004726 1.3e-16 89.0 55 76.4
CDE11G1133 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 1.3e-16 89.0 55 74.5
AUR62035268 Chenopodium quinoa HOM05D003846 ORTHO05D004726 1.3e-16 89.0 54 77.8
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 1.3e-16 89.0 55 74.5
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 1.3e-16 89.0 55 74.5
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 1.3e-16 89.0 54 75.9
Sed0022338 Sechium edule HOM05D003846 ORTHO05D004726 1.3e-16 89.0 55 76.4
Hund25092 Selenicereus undatus HOM05D003846 ORTHO05D004726 1.3e-16 89.0 55 76.4
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 1.3e-16 89.0 55 74.5
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 1.7e-16 88.6 55 76.4
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.7e-16 88.6 55 76.4
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 1.7e-16 88.6 55 72.7
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 1.7e-16 88.6 54 74.1
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 1.7e-16 88.6 54 74.1
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 1.7e-16 88.6 55 74.5
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 1.7e-16 88.6 55 74.5
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 1.7e-16 88.6 55 74.5
Ah.03g137840 Amaranthus hybridus HOM05D003846 ORTHO05D004726 2.2e-16 88.2 54 75.9
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 2.2e-16 88.2 54 72.2
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 2.2e-16 88.2 54 72.2
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 2.2e-16 88.2 55 74.5
AUR62002909 Chenopodium quinoa HOM05D003846 ORTHO05D004726 2.2e-16 88.2 54 75.9
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 2.2e-16 88.2 54 75.9
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 2.2e-16 88.2 55 76.4
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 2.9e-16 87.8 54 74.1
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 2.9e-16 87.8 55 74.5
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 2.9e-16 87.8 53 75.5
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 3.7e-16 87.4 54 70.4
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 3.7e-16 87.4 54 75.9
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 3.7e-16 87.4 54 75.9
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 3.7e-16 87.4 55 74.5
DCAR_011545 Daucus carota HOM05D003846 ORTHO05D004726 4.9e-16 87.0 55 72.7
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 4.9e-16 87.0 55 72.7
Rhsim12G0144000 Rhododendron simsii HOM05D003846 ORTHO05D004726 4.9e-16 87.0 55 76.4
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 6.4e-16 86.7 53 75.5
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 8.3e-16 86.3 55 72.7
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 1.1e-15 85.9 53 73.6
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 1.1e-15 85.9 53 73.6
Psat2g088560 Pisum sativum HOM05D003846 ORTHO05D004726 1.1e-15 85.9 54 74.1
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 1.1e-15 85.9 55 70.9
arahy.Tifrunner.gnm1.ann1.6C9V7B Arachis hypogaea HOM05D003846 ORTHO05D004726 1.4e-15 85.5 54 75.9
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 1.4e-15 85.5 55 72.7
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 1.4e-15 85.5 54 72.2
Prupe.5G218600 Prunus persica HOM05D003846 ORTHO05D004726 1.4e-15 85.5 55 72.7
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 1.9e-15 85.1 53 73.6
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 1.9e-15 85.1 54 70.4
MD14G1223300 Malus domestica HOM05D003846 ORTHO05D004726 1.9e-15 85.1 55 70.9
RcHm_v2.0_Chr7g0184811 Rosa chinensis HOM05D003846 ORTHO05D004726 1.9e-15 85.1 55 70.9
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 1.9e-15 85.1 54 72.2
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 2.4e-15 84.7 55 72.7
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 2.4e-15 84.7 55 72.7
Psat1g039320 Pisum sativum HOM05D003846 ORTHO05D004726 2.4e-15 84.7 54 72.2
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 3.2e-15 84.3 55 70.9
Sed0009794 Sechium edule HOM05D003846 ORTHO05D004726 3.2e-15 84.3 55 70.9
SGA_v2.0_scaffold63G21786 Striga asiatica HOM05D003846 ORTHO05D004726 3.2e-15 84.3 54 70.4
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 3.2e-15 84.3 55 70.9
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 5.4e-15 83.6 53 71.7
FvH4_5g12540 Fragaria vesca HOM05D003846 ORTHO05D004726 5.4e-15 83.6 54 70.4
FAN04G0089 Fragaria x ananassa HOM05D003846 ORTHO05D004726 5.4e-15 83.6 54 70.4
FAN08G1200 Fragaria x ananassa HOM05D003846 ORTHO05D004726 5.4e-15 83.6 54 70.4
FAN13G1296 Fragaria x ananassa HOM05D003846 ORTHO05D004726 5.4e-15 83.6 54 70.4
FAN18G2095 Fragaria x ananassa HOM05D003846 ORTHO05D004726 5.4e-15 83.6 54 70.4
FAN18G2723 Fragaria x ananassa HOM05D003846 ORTHO05D004726 5.4e-15 83.6 54 70.4
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 7.0e-15 83.2 55 69.1
EL10Ac6g14463 Beta vulgaris HOM05D003846 ORTHO05D004726 9.2e-15 82.8 54 72.2
PSO063G1115 Papaver somniferum HOM05D003846 ORTHO05D004726 9.2e-15 82.8 55 70.9
RcHm_v2.0_Chr4g0435651 Rosa chinensis HOM05D003846 ORTHO05D004726 9.2e-15 82.8 55 72.7
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 1.2e-14 82.4 55 69.1
Medtr6g085050 Medicago truncatula HOM05D003846 ORTHO05D004726 1.2e-14 82.4 54 70.4
SEGI_01063 Sequoiadendron giganteum HOM05D003846 ORTHO05D004726 6.0e-14 80.1 55 67.3
PSO782G3649 Papaver somniferum HOM05D003846 ORTHO05D004726 1.3e-13 79.0 55 69.1
TPR.G20310 Trifolium pratense HOM05D003846 ORTHO05D004726 1.7e-13 78.6 49 73.5
Pp3c10_21560 Physcomitrium patens HOM05D003846 ORTHO05D004726 8.6e-13 76.3 55 63.6
Manes.11G039928 Manihot esculenta HOM05D000085 ORTHO05D250131 1.9e-12 75.1 55 61.8
Manes.11G040408 Manihot esculenta HOM05D003846 ORTHO05D004726 2.5e-12 74.7 55 61.8
Manes.11G040441 Manihot esculenta HOM05D000085 ORTHO05D249439 2.5e-12 74.7 55 63.6
Pp3c20_21920 Physcomitrium patens HOM05D003846 ORTHO05D004726 2.8e-11 71.2 53 58.5
CBR_g40856 Chara braunii HOM05D003846 ORTHO05D004726 6.2e-11 70.1 53 60.4
HPP92_027194 Vanilla planifolia HOM05D003846 ORTHO05D004726 6.2e-11 70.1 43 74.4
BcaC08g45948 Brassica carinata HOM05D003846 ORTHO05D004726 4.0e-10 67.4 42 73.8
Aa31sc562G10 Aethionema arabicum HOM05D003846 ORTHO05D004726 5.2e-10 67.0 48 60.4
PRCOL_00003868 Prasinoderma coloniale HOM05D003846 ORTHO05D004726 9.8e-09 62.8 53 50.9


User provided reference genes

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