Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 3.5e-208 728.0 361 100.0
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 7.9e-168 594.0 385 77.1
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 6.7e-167 590.9 385 76.4
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 3.3e-166 588.6 385 76.6
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 7.4e-166 587.4 385 76.6
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 6.3e-165 584.3 385 76.6
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 6.3e-165 584.3 385 75.1
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 5.9e-163 577.8 385 74.8
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 1.0e-162 577.0 385 74.0
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 5.0e-162 574.7 355 81.7
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 1.1e-161 573.5 379 76.0
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 3.2e-161 572.0 383 74.4
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 4.2e-161 571.6 385 74.3
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 4.2e-161 571.6 385 74.3
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 4.2e-161 571.6 385 73.5
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 4.2e-161 571.6 385 73.5
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 6.1e-160 567.8 386 73.6
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 6.1e-160 567.8 380 75.8
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 7.9e-160 567.4 385 74.3
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 1.4e-159 566.6 381 73.5
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 1.8e-159 566.2 378 75.7
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 8.8e-159 563.9 385 73.5
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 1.1e-158 563.5 385 73.8
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 1.1e-158 563.5 385 73.8
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 1.5e-158 563.1 385 74.3
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 1.5e-158 563.1 401 70.8
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 3.3e-158 562.0 385 71.7
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 3.3e-158 562.0 385 74.3
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 4.3e-158 561.6 383 73.4
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 4.3e-158 561.6 378 74.1
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 5.7e-158 561.2 380 73.7
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 7.4e-158 560.8 382 72.5
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 7.4e-158 560.8 385 73.8
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 9.7e-158 560.5 385 72.5
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 9.7e-158 560.5 385 72.7
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 6.9e-156 554.3 385 73.2
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 9.1e-156 553.9 385 71.2
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 9.1e-156 553.9 385 69.6
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 1.2e-155 553.5 385 72.2
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 1.2e-155 553.5 384 72.1
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 3.4e-155 552.0 385 72.2
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 1.0e-154 550.4 385 71.2
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 2.9e-154 548.9 386 71.0
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 5.0e-154 548.1 393 70.2
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 6.5e-154 547.7 380 71.3
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 8.5e-154 547.4 378 72.8
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 1.4e-153 546.6 385 71.7
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 1.4e-153 546.6 387 71.3
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 2.5e-153 545.8 381 71.1
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 2.5e-153 545.8 380 71.1
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 2.5e-153 545.8 385 70.9
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 2.5e-153 545.8 385 71.7
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 7.2e-153 544.3 383 71.0
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 7.2e-153 544.3 383 71.0
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 1.6e-152 543.1 393 70.5
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 4.7e-152 541.6 394 70.8
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 4.7e-152 541.6 386 71.2
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 1.0e-151 540.4 385 70.6
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 5.1e-151 538.1 383 71.3
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 2.0e-150 536.2 378 68.3
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 2.0e-150 536.2 381 70.3
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 5.7e-150 534.6 390 69.5
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 7.4e-150 534.3 385 68.6
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 2.8e-149 532.3 384 68.0
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 2.8e-149 532.3 382 68.6
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 6.3e-149 531.2 380 69.7
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 8.2e-149 530.8 377 68.7
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 2.4e-148 529.3 384 68.2
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 5.3e-148 528.1 384 67.4
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 1.2e-147 526.9 384 67.4
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 1.2e-147 526.9 379 68.1
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 2.6e-147 525.8 383 67.9
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 3.5e-147 525.4 378 68.0
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 4.5e-147 525.0 378 68.3
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 1.0e-146 523.9 517 56.3
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 2.2e-146 522.7 380 67.9
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 2.2e-146 522.7 380 67.9
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 5.0e-146 521.5 382 65.7
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 4.7e-144 515.0 385 66.0
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 6.1e-144 514.6 359 72.4
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 3.3e-142 508.8 390 65.1
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 2.8e-141 505.8 365 68.2
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 1.1e-140 503.8 356 70.5
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 1.6e-139 500.0 424 62.7
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 2.7e-139 499.2 384 65.1
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 7.7e-139 497.7 379 65.2
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 1.5e-137 493.4 385 63.4
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 1.5e-137 493.4 383 65.0
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 4.2e-137 491.9 347 71.2
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 2.1e-136 489.6 384 61.7
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 4.0e-135 485.3 385 66.5
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 5.7e-134 481.5 385 62.1
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 1.8e-132 476.5 385 64.4
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 4.1e-132 475.3 380 62.9
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.6e-131 473.4 353 68.6
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 8.8e-127 457.6 309 74.8
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 2.1e-120 436.4 310 71.9
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.3e-119 433.0 292 74.3
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 4.9e-117 425.2 331 67.7
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.1e-116 424.1 292 73.3
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.0e-114 416.0 308 69.5
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 3.6e-112 409.1 385 58.7
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.8e-111 406.8 312 69.2
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 6.4e-109 398.3 380 53.2
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.6e-107 393.7 376 51.9
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 1.1e-105 387.5 266 72.2
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.1e-105 387.5 351 60.7
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.7e-101 373.6 380 51.1
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 3.7e-101 372.5 381 50.1
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.7e-99 366.3 399 47.1
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 8.6e-98 361.3 204 83.8
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 3.6e-96 355.9 268 65.7
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 6.4e-85 318.5 271 60.5
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 2.4e-79 300.1 231 68.4
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 3.9e-66 256.1 148 82.4
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 7.1e-60 235.3 155 78.1
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 1.3e-58 231.1 237 53.2
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 2.3e-58 230.3 383 35.5
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 1.0e-53 214.9 427 33.7
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 2.7e-51 206.8 423 33.8
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.3e-48 198.0 151 64.2
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 7.2e-44 182.2 115 76.5
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.0e-37 161.8 110 67.3
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 2.6e-25 120.6 120 60.8
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.3e-24 118.2 65 84.6
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 1.7e-24 117.9 182 38.5
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 1.3e-16 91.7 68 66.2
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 3.8e-13 80.1 139 36.7
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-12 78.6 72 50.0
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.1e-12 78.6 147 35.4
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 5.5e-12 76.3 69 55.1
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 1.6e-11 74.7 36 97.2
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 2.0e-09 67.8 36 88.9
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 2.0e-06 57.8 57 50.9
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 2.7e-06 57.4 70 42.9
Nn3g17949 Nelumbo nucifera HOM05D005909 ORTHO05D277065 4.5e-06 56.6 75 44.0


User provided reference genes

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