Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A74G24 Lonicera japonica HOM05D006664 ORTHO05D009007 5.7e-197 690.6 330 100.0
Lj6A793G95 Lonicera japonica HOM05D006664 ORTHO05D009007 2.5e-128 462.6 432 60.0
Lj2A257T62 Lonicera japonica HOM05D006664 ORTHO05D009007 1.6e-66 257.3 269 53.9
Lj6A8G19 Lonicera japonica HOM05D006664 ORTHO05D009007 3.8e-52 209.5 175 61.1
Lj6C54G11 Lonicera japonica HOM05D006664 ORTHO05D009007 2.5e-51 206.8 174 63.8
Lj3A762T33 Lonicera japonica HOM05D006664 ORTHO05D009007 4.6e-37 159.5 129 65.1
CSS0006076 Camellia sinensis var. sinensis HOM05D006664 ORTHO05D009007 4.7e-34 149.4 264 36.7
CSS0029898 Camellia sinensis var. sinensis HOM05D006664 ORTHO05D009007 1.4e-33 147.9 264 36.7
Rhsim08G0071800 Rhododendron simsii HOM05D006664 ORTHO05D009007 5.4e-30 136.0 317 31.9
Migut.A00598 Erythranthe guttata HOM05D006664 ORTHO05D009007 1.2e-29 134.8 290 32.8
CSS0003999 Camellia sinensis var. sinensis HOM05D006664 ORTHO05D009007 2.0e-29 134.0 261 34.9
Dinv07586 Davidia involucrata HOM05D006664 ORTHO05D009007 1.0e-28 131.7 253 34.8
Actinidia38558 Actinidia chinensis HOM05D006664 ORTHO05D009007 3.3e-27 126.7 273 33.7
SGA_v2.0_scaffold305G47956 Striga asiatica HOM05D006664 ORTHO05D009007 2.8e-26 123.6 240 32.1
Actinidia23407 Actinidia chinensis HOM05D006664 ORTHO05D009007 4.7e-26 122.9 275 32.7
Actinidia23408 Actinidia chinensis HOM05D006664 ORTHO05D009007 4.7e-26 122.9 275 32.7
Actinidia27246 Actinidia chinensis HOM05D006664 ORTHO05D009007 4.7e-26 122.9 275 32.7
Dinv12850 Davidia involucrata HOM05D006664 ORTHO05D009007 1.4e-25 121.3 237 33.8
Migut.A00619 Erythranthe guttata HOM05D006664 ORTHO05D009007 3.7e-23 113.2 258 32.2
Migut.A00481 Erythranthe guttata HOM05D006664 ORTHO05D009007 1.4e-22 111.3 222 33.8
TAR185G0005 Trochodendron aralioides HOM05D008437 ORTHO05D008819 4.6e-21 106.3 270 32.2
Nn2g13599 Nelumbo nucifera HOM05D008437 ORTHO05D008819 2.3e-20 104.0 265 31.7
TAR575G0001 Trochodendron aralioides HOM05D008437 ORTHO05D008819 6.6e-20 102.4 193 36.8
TAR629G0100 Trochodendron aralioides HOM05D008437 ORTHO05D008819 6.6e-20 102.4 193 35.8
Cpa.g.sc73.88 Carica papaya HOM05D006664 ORTHO05D009007 4.3e-19 99.8 180 35.6
TAR633G2422 Trochodendron aralioides HOM05D007726 ORTHO05D008819 4.3e-19 99.8 227 33.5
Migut.D00613 Erythranthe guttata HOM05D006664 ORTHO05D009007 7.3e-19 99.0 267 27.7
Rhsim07G0046100 Rhododendron simsii HOM05D006664 ORTHO05D009007 1.6e-18 97.8 236 30.5
Migut.A00604 Erythranthe guttata HOM05D006664 ORTHO05D009007 2.8e-18 97.1 273 30.0
Migut.A00601 Erythranthe guttata HOM05D006664 ORTHO05D009007 3.6e-18 96.7 252 29.8
CiPaw.05G236300 Carya illinoinensis HOM05D006664 ORTHO05D009007 6.2e-18 95.9 338 25.1
Migut.D00751 Erythranthe guttata HOM05D006664 ORTHO05D009007 6.2e-18 95.9 262 28.6
Migut.A00600 Erythranthe guttata HOM05D006664 ORTHO05D009007 1.4e-17 94.7 287 29.6
Migut.A00617 Erythranthe guttata HOM05D006664 ORTHO05D009007 1.4e-17 94.7 265 27.5
TAR636G0594 Trochodendron aralioides HOM05D006664 ORTHO05D008819 2.3e-17 94.0 190 33.2
Migut.A00602 Erythranthe guttata HOM05D006664 ORTHO05D009007 5.2e-17 92.8 224 28.6
TAR629G0642 Trochodendron aralioides HOM05D008437 ORTHO05D008819 6.8e-17 92.4 193 35.8
Migut.E01489 Erythranthe guttata HOM05D006664 ORTHO05D009007 1.2e-16 91.7 286 30.1
Migut.A00599 Erythranthe guttata HOM05D006664 ORTHO05D009007 2.6e-16 90.5 262 28.6
AUR62025056 Chenopodium quinoa HOM05D003636 ORTHO05D013299 2.9e-15 87.0 327 26.0
SGA_v2.0_scaffold69G23259 Striga asiatica HOM05D006664 ORTHO05D009007 2.9e-15 87.0 229 29.7
Nn1g09443 Nelumbo nucifera HOM05D007726 ORTHO05D008819 3.7e-15 86.7 336 26.2
AUR62031665 Chenopodium quinoa HOM05D003636 ORTHO05D013299 4.9e-15 86.3 325 25.8
Oeu000542.1 Olea europaea HOM05D007726 ORTHO05D008819 8.4e-15 85.5 259 29.3
TAR633G1810 Trochodendron aralioides HOM05D007726 ORTHO05D008819 8.4e-15 85.5 269 30.5
AUR62043669 Chenopodium quinoa HOM05D000750 ORTHO05D013299 1.9e-14 84.3 259 27.4
AUR62043803 Chenopodium quinoa HOM05D000750 ORTHO05D013299 1.9e-14 84.3 259 27.4
Migut.D00754 Erythranthe guttata HOM05D006664 ORTHO05D009007 1.9e-14 84.3 269 26.8
SalBow1G2147 Salvia bowleyana HOM05D006664 ORTHO05D009007 4.1e-14 83.2 268 28.7
COL.COLO4_15201 Corchorus olitorius HOM05D008547 ORTHO05D010515 1.2e-13 81.6 190 31.6
Migut.A00618 Erythranthe guttata HOM05D006664 ORTHO05D009007 2.1e-13 80.9 260 30.0
Hma1.2p1_0244F.1_g101190 Hydrangea macrophylla HOM05D008437 ORTHO05D010577 2.7e-13 80.5 264 25.8
AUR62043804 Chenopodium quinoa HOM05D000750 ORTHO05D013299 4.6e-13 79.7 259 27.0
AUR62044330 Chenopodium quinoa HOM05D000750 ORTHO05D013299 6.0e-13 79.3 259 27.0
SalBow1G5259 Salvia bowleyana HOM05D006664 ORTHO05D009007 7.8e-13 79.0 253 25.3
Atru.chr13.2339 Acer truncatum HOM05D007726 ORTHO05D008819 1.0e-12 78.6 294 25.2
SalBow1G1867 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.7e-12 77.8 253 25.3
SalBow1G3269 Salvia bowleyana HOM05D006664 ORTHO05D009007 2.3e-12 77.4 290 26.9
Aqoxy7G00350 Aquilegia oxysepala HOM05D007726 ORTHO05D008819 3.0e-12 77.0 242 26.9
Nn1g09439 Nelumbo nucifera HOM05D006664 ORTHO05D008819 3.0e-12 77.0 239 27.6
CSS0013132 Camellia sinensis var. sinensis HOM05D007726 ORTHO05D008819 5.1e-12 76.3 282 27.7
SalBow1G0567 Salvia bowleyana HOM05D006664 ORTHO05D009007 5.1e-12 76.3 275 26.2
Solyc09g012010.1 Solanum lycopersicum HOM05D008437 ORTHO05D010577 5.1e-12 76.3 231 26.0
Aqoxy5G04106 Aquilegia oxysepala HOM05D007726 ORTHO05D008819 6.6e-12 75.9 260 28.5
Aqoxy5G04107 Aquilegia oxysepala HOM05D006664 ORTHO05D008819 6.6e-12 75.9 193 33.7
Nn1g09442 Nelumbo nucifera HOM05D007726 ORTHO05D008819 8.6e-12 75.5 195 29.2
Prupe.1G556700 Prunus persica HOM05D007726 ORTHO05D008819 8.6e-12 75.5 291 25.8
SalBow1G2277 Salvia bowleyana HOM05D006664 ORTHO05D009007 8.6e-12 75.5 244 27.0
SalBow1G6969 Salvia bowleyana HOM05D006664 ORTHO05D009007 8.6e-12 75.5 244 27.0
Solyc03g078530.1 Solanum lycopersicum HOM05D008437 ORTHO05D010577 8.6e-12 75.5 245 26.1
Sopen03g021420 Solanum pennellii HOM05D008437 ORTHO05D010577 1.1e-11 75.1 231 26.0
CiPaw.02G099600 Carya illinoinensis HOM05D006664 ORTHO05D009007 1.5e-11 74.7 252 25.0
Rhsim05G0205500 Rhododendron simsii HOM05D008437 ORTHO05D010577 1.5e-11 74.7 259 26.6
SalBow1G5395 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.5e-11 74.7 233 27.5
SalBow1G7502 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.5e-11 74.7 273 26.4
SalBow1G2059 Salvia bowleyana HOM05D006664 ORTHO05D009007 2.5e-11 73.9 232 28.4
SalBow1G5157 Salvia bowleyana HOM05D006664 ORTHO05D009007 2.5e-11 73.9 256 27.3
SGA_v2.0_scaffold227G43212 Striga asiatica HOM05D006664 ORTHO05D009007 2.5e-11 73.9 255 26.7
Atru.chr8.2143 Acer truncatum HOM05D008437 ORTHO05D010577 3.3e-11 73.6 228 27.2
COL.COLO4_14611 Corchorus olitorius HOM05D008437 ORTHO05D010577 3.3e-11 73.6 273 25.6
Migut.A00084 Erythranthe guttata HOM05D006664 ORTHO05D009007 3.3e-11 73.6 247 28.7
Medtr8g027595 Medicago truncatula HOM05D008547 ORTHO05D010515 3.3e-11 73.6 256 25.4
PSO081G0128 Papaver somniferum HOM05D000007 ORTHO05D000676 3.3e-11 73.6 245 28.2
QL07p036071 Quercus lobata HOM05D008437 ORTHO05D010577 3.3e-11 73.6 194 30.9
Atru.chr8.2149 Acer truncatum HOM05D008437 ORTHO05D010577 4.3e-11 73.2 196 30.6
Lj7C388T5 Lonicera japonica HOM05D007726 ORTHO05D008819 4.3e-11 73.2 282 25.9
CSS0044623 Camellia sinensis var. sinensis HOM05D008437 ORTHO05D010577 7.3e-11 72.4 241 28.6
AUR62044103 Chenopodium quinoa HOM05D000750 ORTHO05D013299 7.3e-11 72.4 242 26.9
SalBow1G3006 Salvia bowleyana HOM05D006664 ORTHO05D009007 7.3e-11 72.4 263 26.6
SalBow1G6396 Salvia bowleyana HOM05D006664 ORTHO05D009007 7.3e-11 72.4 259 25.5
Atru.chr8.2191 Acer truncatum HOM05D008437 ORTHO05D010577 9.6e-11 72.0 196 30.1
Aqoxy3G01652 Aquilegia oxysepala HOM05D006664 ORTHO05D008819 9.6e-11 72.0 260 28.5
Sopen09g006830 Solanum pennellii HOM05D008437 ORTHO05D010577 9.6e-11 72.0 255 25.5
PGSC0003DMG400046101 Solanum tuberosum HOM05D008437 ORTHO05D010577 1.2e-10 71.6 243 24.3
SalBow1G0151 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.6e-10 71.2 232 26.3
MD15G1404600 Malus domestica HOM05D007726 ORTHO05D008819 2.8e-10 70.5 308 24.4
Atru.chr8.2185 Acer truncatum HOM05D008437 ORTHO05D010577 4.7e-10 69.7 215 28.4
Migut.A00615 Erythranthe guttata HOM05D006664 ORTHO05D009007 4.7e-10 69.7 265 25.3
Migut.N00712 Erythranthe guttata HOM05D006664 ORTHO05D009007 4.7e-10 69.7 268 26.9
COL.COLO4_27629 Corchorus olitorius HOM05D008437 ORTHO05D010577 6.2e-10 69.3 277 22.4
SalBow1G4503 Salvia bowleyana HOM05D000486 ORTHO05D009007 6.2e-10 69.3 262 26.3
Thecc.05G022700 Theobroma cacao HOM05D008437 ORTHO05D010577 6.2e-10 69.3 278 25.5
Atru.chr8.2145 Acer truncatum HOM05D008437 ORTHO05D010577 1.1e-09 68.6 284 25.4
SalBow1G1774 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.1e-09 68.6 248 27.4
SalBow1G5956 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.1e-09 68.6 243 27.6
Dinv27418 Davidia involucrata HOM05D000171 ORTHO05D000101 1.4e-09 68.2 243 28.0
SalBow1G3386 Salvia bowleyana HOM05D006664 ORTHO05D009007 2.4e-09 67.4 227 27.3
CANSAT25G2565 Cannabis sativa HOM05D007726 ORTHO05D008819 3.1e-09 67.0 266 24.8
Migut.H00393 Erythranthe guttata HOM05D006664 ORTHO05D009007 3.1e-09 67.0 251 27.5
SalBow1G5785 Salvia bowleyana HOM05D006664 ORTHO05D009007 3.1e-09 67.0 247 25.9
Psat1g047400 Pisum sativum HOM05D008547 ORTHO05D010515 4.0e-09 66.6 242 26.4
Psat4g206720 Pisum sativum HOM05D008547 ORTHO05D010515 5.2e-09 66.2 229 25.8
ECA234G1595 Erigeron canadensis HOM05D007726 ORTHO05D008819 8.9e-09 65.5 271 22.1
SalBow1G0552 Salvia bowleyana HOM05D006664 ORTHO05D009007 8.9e-09 65.5 273 25.6
Dinv12853 Davidia involucrata HOM05D006664 ORTHO05D009007 1.5e-08 64.7 125 36.0
PSO478G1029 Papaver somniferum HOM05D000007 ORTHO05D000676 1.5e-08 64.7 253 28.1
SalBow2G1749 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.5e-08 64.7 135 29.6
TPR.G16823 Trifolium pratense HOM05D008547 ORTHO05D010515 1.5e-08 64.7 263 24.0
Actinidia22323 Actinidia chinensis HOM05D007726 ORTHO05D008819 2.6e-08 63.9 197 27.9
CSS0002013 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 2.6e-08 63.9 250 25.6
Cpa.g.sc30.96 Carica papaya HOM05D007726 ORTHO05D008819 2.6e-08 63.9 296 25.7
Lj7A388T90 Lonicera japonica HOM05D007726 ORTHO05D008819 2.6e-08 63.9 270 26.3
TAR623G1201 Trochodendron aralioides HOM05D000007 ORTHO05D012655 3.4e-08 63.5 299 23.1
SalBow1G1954 Salvia bowleyana HOM05D006664 ORTHO05D009007 4.4e-08 63.2 225 28.4
SalBow1G4853 Salvia bowleyana HOM05D006664 ORTHO05D009007 4.4e-08 63.2 225 28.4
Aqoxy3G00428 Aquilegia oxysepala HOM05D007726 ORTHO05D008819 5.8e-08 62.8 237 26.2
Manes.12G062601 Manihot esculenta HOM05D000007 ORTHO05D000521 7.6e-08 62.4 281 23.8
Sed0022248 Sechium edule HOM05D000007 ORTHO05D000521 7.6e-08 62.4 246 25.2
Aqoxy1G01388 Aquilegia oxysepala HOM05D017325 ORTHO05D008819 9.9e-08 62.0 185 25.9
COL.COLO4_14612 Corchorus olitorius HOM05D006607 ORTHO05D008166 9.9e-08 62.0 213 24.4
Manes.12G062501 Manihot esculenta HOM05D000007 ORTHO05D000521 9.9e-08 62.0 281 23.8
Medtr5g090860 Medicago truncatula HOM05D008547 ORTHO05D010515 9.9e-08 62.0 276 25.7
Peaxi162Scf00776g00029 Petunia axillaris HOM05D000007 ORTHO05D000521 9.9e-08 62.0 254 23.6
vmacro17342 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 9.9e-08 62.0 248 27.8
MSTRG.25451 Avicennia marina HOM05D007726 ORTHO05D008819 1.3e-07 61.6 302 22.2
FAN08G0648 Fragaria x ananassa HOM05D007726 ORTHO05D008819 1.3e-07 61.6 312 24.7
TPR.G39730 Trifolium pratense HOM05D008547 ORTHO05D010515 1.3e-07 61.6 333 21.3
TPR.G8333 Trifolium pratense HOM05D008547 ORTHO05D010515 1.3e-07 61.6 274 27.0
Ciclev10017685m.g Citrus clementina HOM05D000007 ORTHO05D000521 1.7e-07 61.2 295 24.4
Duzib041G0312 Durio zibethinus HOM05D000007 ORTHO05D000017 1.7e-07 61.2 244 28.7
Hma1.2p1_0026F.1_g016960 Hydrangea macrophylla HOM05D012740 ORTHO05D010577 2.2e-07 60.8 250 24.0
SalBow4G1294 Salvia bowleyana HOM05D006664 ORTHO05D009007 2.9e-07 60.5 203 26.6
DCAR_021098 Daucus carota HOM05D000007 ORTHO05D000521 3.8e-07 60.1 253 25.3
FvH4_5g30670 Fragaria vesca HOM05D007726 ORTHO05D008819 3.8e-07 60.1 312 24.0
FAN18G4305 Fragaria x ananassa HOM05D007726 ORTHO05D008819 3.8e-07 60.1 312 24.0
Gohir.D13G165600 Gossypium hirsutum HOM05D000664 ORTHO05D000491 3.8e-07 60.1 257 27.2
Peaxi162Scf00776g00005 Petunia axillaris HOM05D000007 ORTHO05D000521 3.8e-07 60.1 254 23.6
SalBow1G1554 Salvia bowleyana HOM05D006664 ORTHO05D009007 4.9e-07 59.7 249 25.7
AUR62032924 Chenopodium quinoa HOM05D003636 ORTHO05D013299 6.4e-07 59.3 253 24.1
MBI19_g35549_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D007252 6.4e-07 59.3 234 26.1
PSO013G0363 Papaver somniferum HOM05D000007 ORTHO05D000676 6.4e-07 59.3 255 27.5
Peaxi162Scf00141g00138 Petunia axillaris HOM05D008437 ORTHO05D010577 6.4e-07 59.3 265 24.9
Aqoxy5G03353 Aquilegia oxysepala HOM05D007726 ORTHO05D008819 8.4e-07 58.9 229 26.6
Lj2P257T24 Lonicera japonica HOM05D006664 ORTHO05D009007 8.4e-07 58.9 80 42.5
BraA08t34528Z Brassica rapa HOM05D000171 ORTHO05D000101 1.1e-06 58.5 280 26.8
Migut.C01272 Erythranthe guttata HOM05D007726 ORTHO05D008819 1.1e-06 58.5 251 25.5
Medtr1g102770 Medicago truncatula HOM05D008547 ORTHO05D010515 1.1e-06 58.5 277 22.0
TWI12G0320 Tripterygium wilfordii HOM05D000007 ORTHO05D021355 1.1e-06 58.5 265 23.8
Actinidia13257 Actinidia chinensis HOM05D007726 ORTHO05D008819 1.4e-06 58.2 274 25.2
AUR62044329 Chenopodium quinoa HOM05D000750 ORTHO05D013299 1.4e-06 58.2 235 25.5
DCAR_004301 Daucus carota HOM05D000007 ORTHO05D000521 1.4e-06 58.2 245 23.7
PSO675G1321 Papaver somniferum HOM05D000007 ORTHO05D000676 1.4e-06 58.2 117 29.1
SalBow1G0518 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.4e-06 58.2 223 25.1
CAN.G1227.3 Capsicum annuum HOM05D000185 ORTHO05D000017 1.9e-06 57.8 201 28.4
Thhalv10026790m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.9e-06 57.8 247 25.9
CSS0041692 Camellia sinensis var. sinensis HOM05D007726 ORTHO05D008819 2.4e-06 57.4 201 25.4
CSS0044196 Camellia sinensis var. sinensis HOM05D007726 ORTHO05D008819 2.4e-06 57.4 201 25.4
FAN13G1334 Fragaria x ananassa HOM05D007726 ORTHO05D008819 2.4e-06 57.4 312 24.0
Rhsim12G0150000 Rhododendron simsii HOM05D000007 ORTHO05D000676 2.4e-06 57.4 238 26.1
Hma1.2p1_1532F.1_g289300 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 4.2e-06 56.6 264 24.2
Hma1.2p1_2053F.1_g312720 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 4.2e-06 56.6 264 24.2
PSO170G3990 Papaver somniferum HOM05D000007 ORTHO05D000676 4.2e-06 56.6 250 26.0
Aqoxy6G01586 Aquilegia oxysepala HOM05D063209 ORTHO05D021355 5.4e-06 56.2 252 23.8
PSO675G1967 Papaver somniferum HOM05D000007 ORTHO05D000676 5.4e-06 56.2 139 30.2
Dinv31069 Davidia involucrata HOM05D000007 ORTHO05D000676 7.1e-06 55.8 143 31.5
Nitab4.5_0002794g0030 Nicotiana tabacum HOM05D000007 ORTHO05D000017 7.1e-06 55.8 254 28.7
Lsat_1_v5_gn_7_61961 Lactuca sativa HOM05D012740 ORTHO05D010577 9.3e-06 55.5 242 24.0
Solyc09g012020.1 Solanum lycopersicum HOM05D008437 ORTHO05D010577 9.3e-06 55.5 164 29.3


User provided reference genes

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