Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 5.1e-176 620.9 303 100.0
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 3.3e-135 485.3 286 81.8
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 5.3e-133 478.0 286 79.7
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 4.5e-132 474.9 286 81.8
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 1.7e-131 473.0 286 80.1
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 5.0e-131 471.5 286 80.1
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 1.4e-130 469.9 286 79.0
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 1.9e-130 469.5 286 79.4
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 3.2e-130 468.8 286 79.4
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 4.2e-130 468.4 286 79.0
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 9.4e-130 467.2 286 78.0
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 1.2e-129 466.8 286 78.3
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 1.2e-129 466.8 286 79.0
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 1.6e-129 466.5 286 78.0
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 2.1e-129 466.1 286 78.3
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.1e-129 466.1 286 78.3
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 3.6e-129 465.3 286 78.3
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 4.6e-129 464.9 286 79.4
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.0e-128 463.8 286 77.6
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 1.0e-128 463.8 288 79.2
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 1.4e-128 463.4 286 78.7
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.3e-128 462.6 286 77.6
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 5.1e-128 461.5 286 77.6
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 1.1e-127 460.3 286 78.7
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 3.3e-127 458.8 286 78.0
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 5.7e-127 458.0 286 78.3
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 9.7e-127 457.2 283 78.4
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 1.3e-126 456.8 286 76.6
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 4.8e-126 454.9 286 76.9
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 4.8e-126 454.9 286 78.0
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 1.1e-125 453.8 283 77.4
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 1.1e-125 453.8 286 76.6
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 1.4e-125 453.4 286 76.9
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 5.3e-125 451.4 286 77.6
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 6.9e-125 451.1 286 77.3
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 9.1e-125 450.7 286 77.3
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 9.1e-125 450.7 286 77.6
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 3.4e-124 448.7 286 76.2
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 5.9e-124 448.0 280 77.1
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 1.0e-123 447.2 286 76.2
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 1.7e-123 446.4 290 74.8
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 2.9e-123 445.7 284 76.1
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 5.0e-123 444.9 283 75.6
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 5.0e-123 444.9 283 76.0
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 5.0e-123 444.9 286 75.5
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 6.5e-123 444.5 286 75.5
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 6.5e-123 444.5 283 75.6
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 8.5e-123 444.1 286 75.9
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 1.4e-122 443.4 286 76.2
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 4.2e-122 441.8 286 74.5
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 5.5e-122 441.4 286 75.9
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 5.5e-122 441.4 286 74.8
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 9.4e-122 440.7 284 75.0
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 9.4e-122 440.7 286 76.9
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 1.2e-121 440.3 286 72.4
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 1.2e-121 440.3 286 72.4
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 1.2e-121 440.3 284 74.6
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 1.6e-121 439.9 286 71.7
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.6e-121 439.9 286 71.7
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 1.6e-121 439.9 286 71.7
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 2.1e-121 439.5 286 72.0
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 3.6e-121 438.7 286 74.5
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 1.4e-120 436.8 286 72.7
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 1.4e-120 436.8 285 74.0
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 1.8e-120 436.4 286 72.4
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.8e-120 436.4 286 74.1
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.3e-120 436.0 289 73.4
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 3.9e-120 435.3 291 75.3
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 5.2e-120 434.9 286 72.4
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 2.6e-119 432.6 286 70.6
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 2.6e-119 432.6 286 75.2
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 2.6e-119 432.6 286 71.0
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 3.3e-119 432.2 286 71.0
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 4.4e-119 431.8 286 73.4
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 4.4e-119 431.8 286 73.1
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 5.7e-119 431.4 286 72.7
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 5.7e-119 431.4 286 74.1
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 5.7e-119 431.4 301 71.1
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 7.4e-119 431.0 280 76.8
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 1.7e-118 429.9 286 71.3
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 1.7e-118 429.9 286 75.5
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 2.8e-118 429.1 286 72.4
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.4e-117 426.8 279 76.7
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 2.4e-117 426.0 294 70.1
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 4.1e-117 425.2 286 73.1
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 1.2e-116 423.7 316 67.7
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 2.6e-116 422.5 286 73.8
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 2.6e-116 422.5 286 71.7
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 8.5e-115 417.5 300 70.3
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 4.2e-114 415.2 267 74.9
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 5.5e-114 414.8 286 71.3
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 5.5e-114 414.8 286 71.3
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 3.6e-113 412.1 286 71.3
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 1.2e-111 407.1 252 76.6
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 9.1e-109 397.5 252 76.2
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 1.3e-107 393.7 284 66.5
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 4.2e-106 388.7 264 67.4
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 4.2e-106 388.7 264 67.0
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 3.0e-104 382.5 282 64.5
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.2e-103 380.6 282 64.2
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 9.8e-103 377.5 261 70.9
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 7.2e-98 361.3 272 62.9
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 8.8e-96 354.4 264 62.9
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 9.8e-95 350.9 268 64.2
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.1e-93 347.4 426 47.9
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.2e-92 344.0 427 47.8
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 4.5e-92 342.0 206 79.1
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 1.8e-88 330.1 286 54.9
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 5.7e-87 325.1 290 55.9
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 1.1e-80 304.3 286 53.1
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 8.3e-78 294.7 267 54.3
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 5.4e-77 292.0 271 55.7
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 7.3e-74 281.6 183 71.0
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 4.7e-73 278.9 183 70.5
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 2.0e-71 273.5 293 48.1
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 2.0e-71 273.5 182 70.3
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 3.2e-69 266.2 311 46.6
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.7e-67 260.4 183 63.9
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 7.3e-66 255.0 128 88.3
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 1.5e-63 247.3 298 44.6
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 7.8e-60 235.0 172 66.3
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 6.6e-59 231.9 309 43.7
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 4.3e-58 229.2 265 47.2
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 3.6e-57 226.1 143 79.0
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.1e-56 223.0 151 72.8
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 9.3e-53 211.5 267 45.3
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 2.1e-49 200.3 157 58.0
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 2.1e-44 183.7 98 84.7
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 3.4e-39 166.4 235 38.7
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 1.7e-30 137.5 75 80.0
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 1.6e-28 131.0 81 72.8
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 1.9e-26 124.0 99 57.6
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 3.3e-26 123.2 73 71.2
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 3.3e-26 123.2 73 71.2
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 4.8e-25 119.4 80 72.5
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 6.9e-24 115.5 91 63.7
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.2e-23 114.8 75 72.0
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.5e-23 114.4 76 71.1
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 5.9e-23 112.5 88 63.6
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 2.2e-17 94.0 65 69.2
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 6.9e-16 89.0 52 78.8
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.6e-12 77.8 52 71.2
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.2e-07 61.6 87 44.8
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 7.7e-07 58.9 134 29.1
unitig_699.g19475 Utricularia gibba HOM05D005341 ORTHO05D416497 2.9e-06 57.0 50 58.0


User provided reference genes

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