Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A731T87 Lonicera japonica HOM05D008187 ORTHO05D009830 4.1e-68 261.2 123 100.0
Dinv20504 Davidia involucrata HOM05D008187 ORTHO05D009830 6.9e-23 110.9 124 52.4
Dinv20537 Davidia involucrata HOM05D008187 ORTHO05D009830 6.9e-23 110.9 124 52.4
Hma1.2p1_0441F.1_g153840 Hydrangea macrophylla HOM05D008187 ORTHO05D009830 8.5e-21 104.0 127 46.5
Dinv08898 Davidia involucrata HOM05D008187 ORTHO05D009830 1.1e-20 103.6 128 49.2
Atru.chr11.1001 Acer truncatum HOM05D008187 ORTHO05D009830 2.5e-20 102.4 126 49.2
CSS0005647 Camellia sinensis var. sinensis HOM05D008187 ORTHO05D009830 2.7e-19 99.0 129 48.1
Thecc.02G303500 Theobroma cacao HOM05D008187 ORTHO05D009830 2.7e-19 99.0 123 47.2
GSVIVG01011592001 Vitis vinifera HOM05D008187 ORTHO05D009830 4.6e-19 98.2 124 46.8
COL.COLO4_27577 Corchorus olitorius HOM05D008187 ORTHO05D009830 2.3e-18 95.9 119 45.4
Lalb_Chr07g0187941 Lupinus albus HOM05D008187 ORTHO05D009830 2.2e-16 89.4 125 43.2
Lj4g0022895 Lotus japonicus HOM05D008187 ORTHO05D009830 2.8e-16 89.0 123 40.7
arahy.Tifrunner.gnm1.ann1.61TZTK Arachis hypogaea HOM05D008187 ORTHO05D009830 6.9e-15 84.3 117 40.2
arahy.Tifrunner.gnm1.ann1.FUMC5T Arachis hypogaea HOM05D008187 ORTHO05D009830 9.1e-15 84.0 117 40.2
CiPaw.05G158900 Carya illinoinensis HOM05D008187 ORTHO05D009830 9.1e-15 84.0 128 45.3
Ciclev10016789m.g Citrus clementina HOM05D008187 ORTHO05D009830 9.1e-15 84.0 121 41.3
VMungo0251G0444 Vigna mungo HOM05D008187 ORTHO05D009830 1.2e-14 83.6 126 38.9
DCAR_023540 Daucus carota HOM05D008187 ORTHO05D009830 1.5e-14 83.2 113 44.2
MD13G1015500 Malus domestica HOM05D008187 ORTHO05D009830 1.5e-14 83.2 132 37.9
Sabra08G0106100 Salix brachista HOM05D008187 ORTHO05D009830 1.5e-14 83.2 116 42.2
Lsat_1_v5_gn_4_24181 Lactuca sativa HOM05D008187 ORTHO05D009830 2.0e-14 82.8 120 40.0
FAN07G0781 Fragaria x ananassa HOM05D008187 ORTHO05D009830 2.6e-14 82.4 124 44.4
Manes.15G138900 Manihot esculenta HOM05D008187 ORTHO05D009830 2.6e-14 82.4 122 40.2
Phvul.002G184100 Phaseolus vulgaris HOM05D008187 ORTHO05D009830 2.6e-14 82.4 126 39.7
FAN12G2367 Fragaria x ananassa HOM05D008187 ORTHO05D009830 3.4e-14 82.0 124 44.4
FAN12G2898 Fragaria x ananassa HOM05D008187 ORTHO05D009830 3.4e-14 82.0 124 44.4
Ca_18193_v3 Cicer arietinum L. HOM05D008187 ORTHO05D009830 5.9e-14 81.3 125 40.0
FAN22G0157 Fragaria x ananassa HOM05D008187 ORTHO05D009830 5.9e-14 81.3 124 44.4
QL03p039185 Quercus lobata HOM05D008187 ORTHO05D009830 5.9e-14 81.3 132 38.6
FAN17G0865 Fragaria x ananassa HOM05D008187 ORTHO05D009830 7.7e-14 80.9 124 44.4
DCAR_026822 Daucus carota HOM05D008187 ORTHO05D009830 1.0e-13 80.5 130 39.2
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 1.3e-13 80.1 123 40.7
Glyma.08G092600 Glycine max HOM05D008187 ORTHO05D009830 1.7e-13 79.7 119 42.9
Psat7g085360 Pisum sativum HOM05D008187 ORTHO05D009830 1.7e-13 79.7 117 41.0
CiPaw.06G058400 Carya illinoinensis HOM05D008187 ORTHO05D009830 2.2e-13 79.3 124 42.7
Eucgr.B02651 Eucalyptus grandis HOM05D008187 ORTHO05D009830 2.9e-13 79.0 112 45.5
FvH4_4g26140 Fragaria vesca HOM05D008187 ORTHO05D009830 2.9e-13 79.0 124 43.5
Glyma.05G137300 Glycine max HOM05D008187 ORTHO05D009830 3.8e-13 78.6 123 41.5
Manes.17G089700 Manihot esculenta HOM05D008187 ORTHO05D009830 6.5e-13 77.8 125 44.0
CANSAT78G2356 Cannabis sativa HOM05D008187 ORTHO05D009830 1.1e-12 77.0 142 40.8
Potri.008G140000 Populus trichocarpa HOM05D008187 ORTHO05D009830 1.1e-12 77.0 118 39.8
Potri.010G101500 Populus trichocarpa HOM05D008187 ORTHO05D009830 2.5e-12 75.9 118 38.1
TWI77G0539 Tripterygium wilfordii HOM05D008187 ORTHO05D009830 3.2e-12 75.5 104 43.3
TWI74G1547 Tripterygium wilfordii HOM05D008187 ORTHO05D009830 4.2e-12 75.1 128 39.8
HanXRQChr17g0566281 Helianthus annuus HOM05D008187 ORTHO05D009830 1.2e-11 73.6 110 40.0
Prupe.1G338300 Prunus persica HOM05D008187 ORTHO05D009830 2.1e-11 72.8 133 36.1
Actinidia34059 Actinidia chinensis HOM05D008187 ORTHO05D009830 2.7e-11 72.4 125 37.6
Sabra10G0074300 Salix brachista HOM05D008187 ORTHO05D009830 3.6e-11 72.0 116 37.9
HanXRQChr16g0527611 Helianthus annuus HOM05D008187 ORTHO05D009830 6.1e-11 71.2 119 36.1
TAR622G0296 Trochodendron aralioides HOM05D008187 ORTHO05D009830 6.1e-11 71.2 124 40.3
ClCG11G000980 Citrullus lanatus HOM05D008187 ORTHO05D009830 1.0e-10 70.5 122 36.9
Sed0002824 Sechium edule HOM05D008187 ORTHO05D009830 1.4e-10 70.1 118 33.9
Gohir.A04G143800 Gossypium hirsutum HOM05D008187 ORTHO05D009830 1.8e-10 69.7 123 35.8
Gohir.D04G188100 Gossypium hirsutum HOM05D008187 ORTHO05D009830 3.0e-10 68.9 123 36.6
MELO3C020063.2 Cucumis melo HOM05D008187 ORTHO05D009830 8.8e-10 67.4 121 36.4
Gorai.012G183500 Gossypium raimondii HOM05D008187 ORTHO05D009830 8.8e-10 67.4 124 36.3
MBI19_g01917_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D009830 8.8e-10 67.4 122 41.0
Actinidia38421 Actinidia chinensis HOM05D008187 ORTHO05D009830 1.5e-09 66.6 92 43.5
CsaV3_5G012950 Cucumis sativus L. HOM05D008187 ORTHO05D009830 3.3e-09 65.5 121 36.4
FAN17G0113 Fragaria x ananassa HOM05D008187 ORTHO05D009830 7.4e-09 64.3 87 46.0
Rhsim09G0085300 Rhododendron simsii HOM05D008187 ORTHO05D009830 7.4e-09 64.3 122 37.7
MD16G1013000 Malus domestica HOM05D008187 ORTHO05D009830 2.2e-08 62.8 133 34.6
Dinv29021 Davidia involucrata HOM05D003603 ORTHO05D004186 3.7e-08 62.0 70 48.6
Nn1g01903 Nelumbo nucifera HOM05D003603 ORTHO05D004186 6.3e-08 61.2 94 38.3
THA.LOC104805100 Tarenaya hassleriana HOM05D010619 ORTHO05D009830 6.3e-08 61.2 120 35.8
TAR375G0833 Trochodendron aralioides HOM05D003603 ORTHO05D004186 6.3e-08 61.2 95 40.0
arahy.Tifrunner.gnm1.ann1.JMHQ16 Arachis hypogaea HOM05D003603 ORTHO05D004186 8.2e-08 60.8 94 37.2
arahy.Tifrunner.gnm1.ann1.Z69TJ6 Arachis hypogaea HOM05D003603 ORTHO05D004186 8.2e-08 60.8 94 37.2
PGR031G2143 Punica granatum HOM05D003603 ORTHO05D004186 8.2e-08 60.8 96 39.6
Nn3g19353 Nelumbo nucifera HOM05D003603 ORTHO05D004186 1.1e-07 60.5 94 35.1
SGA_v2.0_scaffold111G31383 Striga asiatica HOM05D003603 ORTHO05D004186 1.4e-07 60.1 60 50.0
Oeu017100.1 Olea europaea HOM05D003603 ORTHO05D004186 1.8e-07 59.7 68 44.1
CSS0011703 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 2.4e-07 59.3 64 46.9
GSVIVG01013000001 Vitis vinifera HOM05D003603 ORTHO05D004186 2.4e-07 59.3 75 42.7
BcaB03g13776 Brassica carinata HOM05D003603 ORTHO05D004186 3.1e-07 58.9 71 43.7
CARHR144510 Cardamine hirsuta HOM05D010619 ORTHO05D009830 4.1e-07 58.5 112 33.9
Hma1.2p1_0803F.1_g220845 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 4.1e-07 58.5 95 36.8
Hma1.2p1_0803F.1_g220850 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 4.1e-07 58.5 95 36.8
BcaC05g27937 Brassica carinata HOM05D003603 ORTHO05D004186 5.3e-07 58.2 80 42.5
A05p25320 Brassica napus HOM05D003603 ORTHO05D004186 5.3e-07 58.2 80 42.5
C05p39410 Brassica napus HOM05D003603 ORTHO05D004186 5.3e-07 58.2 80 42.5
BolC5t32678H Brassica oleracea HOM05D003603 ORTHO05D004186 5.3e-07 58.2 80 42.5
BraA05t21417Z Brassica rapa HOM05D003603 ORTHO05D004186 5.3e-07 58.2 80 42.5
CiPaw.12G069800 Carya illinoinensis HOM05D003603 ORTHO05D004186 5.3e-07 58.2 55 49.1
ATR0598G345 Amborella trichopoda HOM05D003603 ORTHO05D004186 7.0e-07 57.8 96 35.4
ATR0829G136 Amborella trichopoda HOM05D003603 ORTHO05D004186 7.0e-07 57.8 55 52.7
Ca_25158_v3 Cicer arietinum L. HOM05D003603 ORTHO05D004186 1.2e-06 57.0 96 37.5
HanXRQChr13g0404821 Helianthus annuus HOM05D003603 ORTHO05D004186 1.2e-06 57.0 68 45.6
Medtr5g027940 Medicago truncatula HOM05D003603 ORTHO05D004186 1.2e-06 57.0 73 42.5
TPR.G19474 Trifolium pratense HOM05D003603 ORTHO05D004186 1.2e-06 57.0 94 36.2
Dinv06911 Davidia involucrata HOM05D003603 ORTHO05D004186 1.5e-06 56.6 75 41.3
Sp1g27670 Schrenkiella parvula HOM05D003603 ORTHO05D004186 2.0e-06 56.2 77 42.9
COL.COLO4_16913 Corchorus olitorius HOM05D003603 ORTHO05D004186 2.6e-06 55.8 57 50.9
Duzib068G0284 Durio zibethinus HOM05D003603 ORTHO05D004186 2.6e-06 55.8 55 47.3
Gohir.A03G000024 Gossypium hirsutum HOM05D003603 ORTHO05D004186 2.6e-06 55.8 55 47.3
Gohir.D03G177000 Gossypium hirsutum HOM05D003603 ORTHO05D004186 2.6e-06 55.8 55 47.3
Gorai.003G186200 Gossypium raimondii HOM05D003080 ORTHO05D003601 2.6e-06 55.8 55 47.3
Lalb_Chr16g0380941 Lupinus albus HOM05D003603 ORTHO05D004186 2.6e-06 55.8 55 47.3
AT1G31940 Arabidopsis thaliana HOM05D003603 ORTHO05D004186 3.4e-06 55.5 79 39.2
BcaC04g21548 Brassica carinata HOM05D010619 ORTHO05D009830 3.4e-06 55.5 123 30.9
C09p30500 Brassica napus HOM05D010619 ORTHO05D009830 3.4e-06 55.5 123 30.9
Carub.0001s3027 Capsella rubella HOM05D003603 ORTHO05D004186 3.4e-06 55.5 79 39.2
Lsat_1_v5_gn_6_73320 Lactuca sativa HOM05D003603 ORTHO05D004186 3.4e-06 55.5 98 36.7
RcHm_v2.0_Chr7g0212381 Rosa chinensis HOM05D003603 ORTHO05D004186 3.4e-06 55.5 55 47.3
BcaB07g30724 Brassica carinata HOM05D010619 ORTHO05D009830 4.5e-06 55.1 88 35.2
CSS0028298 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 4.5e-06 55.1 77 44.2
FAN04G2484 Fragaria x ananassa HOM05D003603 ORTHO05D004186 4.5e-06 55.1 70 44.3
SalBow8G3962 Salvia bowleyana HOM05D003603 ORTHO05D004186 4.5e-06 55.1 56 51.8
CARHR031290 Cardamine hirsuta HOM05D003603 ORTHO05D004186 5.9e-06 54.7 79 39.2
MELO3C013813.2 Cucumis melo HOM05D003603 ORTHO05D004186 5.9e-06 54.7 85 38.8
CsaV3_3G001240 Cucumis sativus L. HOM05D003603 ORTHO05D004186 5.9e-06 54.7 85 38.8
ECA233G2030 Erigeron canadensis HOM05D003603 ORTHO05D004186 5.9e-06 54.7 96 38.5
FvH4_5g23370 Fragaria vesca HOM05D003603 ORTHO05D004186 5.9e-06 54.7 96 38.5
FAN08G0102 Fragaria x ananassa HOM05D003603 ORTHO05D004186 5.9e-06 54.7 70 44.3
FAN13G0864 Fragaria x ananassa HOM05D003603 ORTHO05D004186 5.9e-06 54.7 70 44.3
FAN18G1056 Fragaria x ananassa HOM05D003603 ORTHO05D004186 5.9e-06 54.7 96 38.5
FAN18G2371 Fragaria x ananassa HOM05D003603 ORTHO05D004186 5.9e-06 54.7 96 38.5
Manes.15G192766 Manihot esculenta HOM05D003603 ORTHO05D004186 5.9e-06 54.7 55 45.5
Nitab4.5_0000301g0080 Nicotiana tabacum HOM05D003603 ORTHO05D004186 5.9e-06 54.7 90 36.7
TAR636G1298 Trochodendron aralioides HOM05D003603 ORTHO05D004186 5.9e-06 54.7 94 35.1
Actinidia01335 Actinidia chinensis HOM05D003603 ORTHO05D004186 7.7e-06 54.3 69 43.5
AL5G11040 Arabidopsis lyrata HOM05D010619 ORTHO05D009830 7.7e-06 54.3 114 33.3
BolC9t55912H Brassica oleracea HOM05D010619 ORTHO05D009830 7.7e-06 54.3 123 30.9
DCAR_004264 Daucus carota HOM05D003603 ORTHO05D004186 7.7e-06 54.3 67 41.8
Glyma.01G010900 Glycine max HOM05D003603 ORTHO05D004186 7.7e-06 54.3 94 35.1
PSO063G1743 Papaver somniferum HOM05D003603 ORTHO05D004186 7.7e-06 54.3 54 48.1
PSO782G4801 Papaver somniferum HOM05D003603 ORTHO05D004186 7.7e-06 54.3 54 48.1


User provided reference genes

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