Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A70T54 Lonicera japonica HOM05D007575 ORTHO05D009611 0.0e+00 1242.6 644 100.0
Lj6A61T39 Lonicera japonica HOM05D007575 ORTHO05D009611 2.0e-185 653.3 404 87.4
CSS0031716 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 1.0e-149 534.6 683 49.6
Actinidia39859 Actinidia chinensis HOM05D007575 ORTHO05D009611 8.1e-131 471.9 678 45.7
GSVIVG01013567001 Vitis vinifera HOM05D007575 ORTHO05D009611 4.6e-126 456.1 648 46.3
Rhsim09G0032600 Rhododendron simsii HOM05D007575 ORTHO05D009611 1.5e-121 441.0 678 43.8
QL10p045159 Quercus lobata HOM05D007575 ORTHO05D009611 4.4e-121 439.5 644 46.9
Cfa015783 Carpinus fangiana HOM05D007575 ORTHO05D009611 1.3e-120 438.0 645 45.6
Actinidia11312 Actinidia chinensis HOM05D007575 ORTHO05D009611 4.2e-119 433.0 645 45.1
CiPaw.01G103900 Carya illinoinensis HOM05D007575 ORTHO05D009611 9.3e-119 431.8 644 45.8
Haze_00711 Corylus avellana HOM05D007575 ORTHO05D009611 4.6e-118 429.5 649 45.5
Prupe.1G189300 Prunus persica HOM05D007575 ORTHO05D009611 2.3e-117 427.2 656 43.9
TAR633G2419 Trochodendron aralioides HOM05D007575 ORTHO05D009611 1.1e-116 424.9 645 45.4
Manes.11G115700 Manihot esculenta HOM05D007575 ORTHO05D009611 4.3e-116 422.9 649 45.0
vmacro00586 Vaccinium macrocarpon HOM05D007575 ORTHO05D009611 5.6e-116 422.5 686 43.0
Sabra07G0100200 Salix brachista HOM05D007575 ORTHO05D009611 1.2e-113 414.8 649 44.8
Cc03_g13380 Coffea canephora HOM05D007575 ORTHO05D009611 5.8e-113 412.5 642 43.5
Migut.N00470 Erythranthe guttata HOM05D007575 ORTHO05D009611 1.9e-111 407.5 638 44.0
Oeu050351.1 Olea europaea HOM05D007575 ORTHO05D009611 2.7e-110 403.7 643 43.9
MD04G1038600 Malus domestica HOM05D007575 ORTHO05D009611 1.3e-109 401.4 648 43.2
Potri.017G036600 Populus trichocarpa HOM05D007575 ORTHO05D009611 8.1e-107 392.1 646 43.5
Thecc.04G183800 Theobroma cacao HOM05D007575 ORTHO05D009611 1.0e-104 385.2 652 43.7
Duzib151G0056 Durio zibethinus HOM05D007575 ORTHO05D009611 2.2e-104 384.0 651 42.9
CAN.G710.64 Capsicum annuum HOM05D007575 ORTHO05D009611 6.4e-104 382.5 643 42.3
HanXRQChr02g0057801 Helianthus annuus HOM05D007575 ORTHO05D009611 9.3e-103 378.6 647 42.7
Ciclev10019508m.g Citrus clementina HOM05D007575 ORTHO05D009611 1.6e-102 377.9 673 41.2
DCAR_027534 Daucus carota HOM05D007575 ORTHO05D009611 2.1e-102 377.5 641 41.8
CANSAT78G0404 Cannabis sativa HOM05D007575 ORTHO05D009611 1.8e-101 374.4 643 39.8
Eucgr.A00245 Eucalyptus grandis HOM05D007575 ORTHO05D009611 3.9e-101 373.2 646 41.0
Gohir.A10G134800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 3.9e-101 373.2 665 42.3
MSTRG.24588 Avicennia marina HOM05D007575 ORTHO05D009611 5.1e-101 372.9 653 40.4
THA.LOC104803562 Tarenaya hassleriana HOM05D007575 ORTHO05D009611 1.1e-100 371.7 653 40.9
Gorai.011G145500 Gossypium raimondii HOM05D007575 ORTHO05D009611 2.5e-100 370.5 664 41.4
SGA_v2.0_scaffold406G51053 Striga asiatica HOM05D007575 ORTHO05D009611 2.5e-100 370.5 659 40.7
Gohir.D10G131800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 4.3e-100 369.8 664 41.4
ECA233G3130 Erigeron canadensis HOM05D007575 ORTHO05D009611 5.7e-100 369.4 649 42.5
FAN17G1632 Fragaria x ananassa HOM05D007575 ORTHO05D009611 6.2e-99 365.9 712 40.0
SalBow6G5467 Salvia bowleyana HOM05D007575 ORTHO05D009611 4.0e-98 363.2 647 41.0
Atru.chr3.1619 Acer truncatum HOM05D007575 ORTHO05D009611 5.3e-98 362.8 621 42.5
FAN07G0850 Fragaria x ananassa HOM05D007575 ORTHO05D009611 9.0e-98 362.1 712 38.9
Gorai.009G350900 Gossypium raimondii HOM05D007575 ORTHO05D009611 9.0e-98 362.1 654 40.8
Gohir.D05G326300 Gossypium hirsutum HOM05D007575 ORTHO05D009611 5.8e-97 359.4 654 40.7
Peaxi162Scf00286g00233 Petunia axillaris HOM05D007575 ORTHO05D009611 1.7e-96 357.8 641 41.0
ClCG08G004240 Citrullus lanatus HOM05D007575 ORTHO05D009611 4.9e-96 356.3 650 40.0
RcHm_v2.0_Chr4g0407361 Rosa chinensis HOM05D007575 ORTHO05D009611 6.5e-96 355.9 703 38.4
FvH4_4g11270 Fragaria vesca HOM05D007575 ORTHO05D009611 8.4e-96 355.5 706 38.5
Potri.007G123800 Populus trichocarpa HOM05D007575 ORTHO05D009611 1.1e-95 355.1 582 44.2
Lsat_1_v5_gn_6_54841 Lactuca sativa HOM05D007575 ORTHO05D009611 1.9e-95 354.4 645 38.9
CsaV3_6G003720 Cucumis sativus L. HOM05D007575 ORTHO05D009611 2.5e-95 354.0 650 40.8
Thhalv10001393m.g Eutrema salsugineum HOM05D007575 ORTHO05D009611 2.5e-95 354.0 669 40.7
Sabra17G0024000 Salix brachista HOM05D007575 ORTHO05D009611 4.2e-95 353.2 690 39.7
Aa31LG1G25020 Aethionema arabicum HOM05D007575 ORTHO05D009611 2.1e-94 350.9 658 40.0
MELO3C011621.2 Cucumis melo HOM05D007575 ORTHO05D009611 6.1e-94 349.4 652 41.1
Gohir.A05G326900 Gossypium hirsutum HOM05D007575 ORTHO05D009611 3.0e-93 347.1 654 40.4
FAN22G0659 Fragaria x ananassa HOM05D007575 ORTHO05D009611 8.7e-93 345.5 716 38.7
Nn1g09745 Nelumbo nucifera HOM05D007575 ORTHO05D009611 7.4e-92 342.4 676 37.9
Sed0001943 Sechium edule HOM05D007575 ORTHO05D009611 1.4e-90 338.2 658 40.3
Sopen09g036470 Solanum pennellii HOM05D007575 ORTHO05D009611 2.4e-90 337.4 641 40.4
PGR083G2249 Punica granatum HOM05D007575 ORTHO05D009611 2.0e-89 334.3 642 37.5
MBI08_g10298_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 1.1e-87 328.6 669 37.2
Sp4g25330 Schrenkiella parvula HOM05D007575 ORTHO05D009611 3.2e-87 327.0 663 38.6
Carub.0004s2568 Capsella rubella HOM05D007575 ORTHO05D009611 9.4e-87 325.5 665 38.6
AL4G41870 Arabidopsis lyrata HOM05D007575 ORTHO05D009611 4.6e-86 323.2 658 38.6
AT2G43210 Arabidopsis thaliana HOM05D007575 ORTHO05D009611 2.3e-85 320.9 656 38.4
Nitab4.5_0004962g0010 Nicotiana tabacum HOM05D007575 ORTHO05D009611 1.5e-81 308.1 536 43.5
Nitab4.5_0001049g0060 Nicotiana tabacum HOM05D007575 ORTHO05D009611 1.0e-77 295.4 536 43.3
A04p32490 Brassica napus HOM05D007575 ORTHO05D009611 1.8e-77 294.7 669 36.3
BraA04t18714Z Brassica rapa HOM05D001811 ORTHO05D001738 1.4e-74 285.0 644 36.3
unitig_8.g3630 Utricularia gibba HOM05D007575 ORTHO05D009611 6.5e-72 276.2 661 36.2
CDE09G0236 Ceratophyllum demersum HOM05D007575 ORTHO05D009611 8.5e-72 275.8 649 34.8
C04p70190 Brassica napus HOM05D007575 ORTHO05D009611 3.0e-69 267.3 678 35.8
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 1.1e-68 265.4 647 35.5
Solyc09g098550.4 Solanum lycopersicum HOM05D007575 ORTHO05D009611 5.3e-66 256.5 523 40.0
ATR0743G244 Amborella trichopoda HOM05D007575 ORTHO05D009611 1.6e-65 255.0 658 31.5
Hma1.2p1_1477F.1_g285910 Hydrangea macrophylla HOM05D007575 ORTHO05D009611 7.7e-65 252.7 482 41.9
PSO210G6745 Papaver somniferum HOM05D007575 ORTHO05D009611 1.3e-64 251.9 664 32.4
HPP92_002869 Vanilla planifolia HOM05D007575 ORTHO05D009611 2.2e-64 251.1 614 33.1
HPP92_002813 Vanilla planifolia HOM05D007575 ORTHO05D009611 3.2e-63 247.3 648 32.6
CARHR138270 Cardamine hirsuta HOM05D007575 ORTHO05D009611 2.7e-62 244.2 560 37.1
CSS0007449 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 3.4e-60 237.3 368 44.3
Os11g0293900 Oryza sativa ssp. japonica HOM05D007575 ORTHO05D009611 1.3e-59 235.3 654 30.9
BcaNung07370 Brassica carinata HOM05D007575 ORTHO05D009611 2.3e-53 214.5 546 34.2
PSO832G0541 Papaver somniferum HOM05D007575 ORTHO05D009611 7.0e-50 203.0 589 30.9
SEGI_13760 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 1.3e-32 145.6 445 28.3
TAR633G1182 Trochodendron aralioides HOM05D007575 ORTHO05D009611 8.6e-32 142.9 189 50.8
SalBow5G2148 Salvia bowleyana HOM05D007575 ORTHO05D009611 1.5e-28 132.1 182 51.1
SalBow5G4021 Salvia bowleyana HOM05D007575 ORTHO05D009611 1.5e-28 132.1 182 51.1
Lsat_1_v5_gn_5_138981 Lactuca sativa HOM05D007575 ORTHO05D009611 5.4e-26 123.6 403 29.8
Pp3c20_2320 Physcomitrium patens HOM05D007575 ORTHO05D009611 7.1e-26 123.2 649 24.5
Eucgr.A00051 Eucalyptus grandis HOM05D007575 ORTHO05D009611 1.6e-25 122.1 179 44.7
BcaB06g29288 Brassica carinata HOM05D007575 ORTHO05D009611 4.6e-25 120.6 166 41.6
Mapoly0164s0007 Marchantia polymorpha HOM05D007575 ORTHO05D009611 4.6e-25 120.6 607 25.2
SMO116G0403 Selaginella moellendorffii HOM05D007575 ORTHO05D009611 3.3e-23 114.4 630 24.3
PGSC0003DMG400021612 Solanum tuberosum HOM05D007575 ORTHO05D009611 2.0e-20 105.1 80 63.8
Lj4C847T12 Lonicera japonica HOM05D001538 ORTHO05D007090 3.4e-20 104.4 59 86.4
Lj1A584T33 Lonicera japonica HOM05D001538 ORTHO05D029994 2.2e-19 101.7 59 84.7
Lj5C610T14 Lonicera japonica HOM05D001538 ORTHO05D007090 2.9e-19 101.3 59 86.4
Zm00001eb198990 Zea mays HOM05D007575 ORTHO05D009611 3.7e-19 100.9 288 29.2
SEGI_03248 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 4.9e-19 100.5 175 41.1
Lj2E800T0 Lonicera japonica HOM05D001538 ORTHO05D007090 1.1e-18 99.4 59 83.1
Lj1C725T15 Lonicera japonica HOM05D001538 ORTHO05D029994 1.4e-18 99.0 59 83.1
Lj7C583G3 Lonicera japonica HOM05D005757 ORTHO05D007090 2.4e-13 81.6 60 68.3
AagrBONN_evm.TU.Sc2ySwM_344.3290 Anthoceros agrestis HOM05D007575 ORTHO05D009611 1.3e-11 75.9 495 26.3


User provided reference genes

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