Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A693T62 Lonicera japonica HOM05D004749 ORTHO05D005995 6.8e-58 227.6 164 100.0
Actinidia13350 Actinidia chinensis HOM05D004749 ORTHO05D005995 6.1e-43 177.9 164 65.9
CSS0022958 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 1.4e-42 176.8 165 75.8
Lju912A2T64 Lonicera japonica HOM05D004749 ORTHO05D005995 8.9e-42 174.1 125 80.0
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 9.8e-41 170.6 146 79.5
Hma1.2p1_1168F.1_g263150 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 1.1e-39 167.2 123 70.7
Hma1.2p1_4126F.1_g338340 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 1.1e-39 167.2 123 70.7
Cc02_g31810 Coffea canephora HOM05D004749 ORTHO05D005995 1.8e-39 166.4 164 57.3
Nn3g21759 Nelumbo nucifera HOM05D004749 ORTHO05D005995 4.1e-39 165.2 165 60.6
TAR633G2406 Trochodendron aralioides HOM05D004749 ORTHO05D005995 2.0e-38 162.9 125 72.0
Nn4g25537 Nelumbo nucifera HOM05D004749 ORTHO05D005995 2.7e-38 162.5 162 63.0
Peaxi162Scf00074g02033 Petunia axillaris HOM05D004749 ORTHO05D005995 3.0e-37 159.1 164 72.6
Nitab4.5_0001220g0090 Nicotiana tabacum HOM05D004749 ORTHO05D005995 5.0e-37 158.3 125 69.6
GSVIVG01034965001 Vitis vinifera HOM05D004749 ORTHO05D005995 1.1e-36 157.1 123 74.0
Migut.A01124 Erythranthe guttata HOM05D004749 ORTHO05D005995 1.9e-36 156.4 125 66.4
Nitab4.5_0006920g0020 Nicotiana tabacum HOM05D004749 ORTHO05D005995 2.5e-36 156.0 125 68.8
Eucgr.K01628 Eucalyptus grandis HOM05D004749 ORTHO05D005995 3.3e-36 155.6 164 68.3
Sopen08g029650 Solanum pennellii HOM05D004749 ORTHO05D005995 3.3e-36 155.6 125 67.2
PGSC0003DMG400012333 Solanum tuberosum HOM05D004749 ORTHO05D005995 3.3e-36 155.6 125 67.2
Solyc08g081330.4 Solanum lycopersicum HOM05D004749 ORTHO05D005995 4.3e-36 155.2 125 67.2
CAN.G532.7 Capsicum annuum HOM05D004749 ORTHO05D005995 5.6e-36 154.8 164 59.8
Gohir.A09G223200 Gossypium hirsutum HOM05D004749 ORTHO05D005995 7.3e-36 154.5 165 60.6
Thecc.04G246100 Theobroma cacao HOM05D004749 ORTHO05D005995 7.3e-36 154.5 125 66.4
MD12G1007400 Malus domestica HOM05D004749 ORTHO05D005995 9.5e-36 154.1 125 64.8
MSTRG.12116 Avicennia marina HOM05D004749 ORTHO05D005995 2.1e-35 152.9 164 61.0
MD14G1004700 Malus domestica HOM05D004749 ORTHO05D005995 2.1e-35 152.9 125 64.8
PSO210G5482 Papaver somniferum HOM05D004749 ORTHO05D005995 2.8e-35 152.5 125 70.4
PSO210G7457 Papaver somniferum HOM05D004749 ORTHO05D005995 2.8e-35 152.5 125 70.4
QL06p012791 Quercus lobata HOM05D004749 ORTHO05D005995 2.8e-35 152.5 164 62.8
TWI73G0343 Tripterygium wilfordii HOM05D004749 ORTHO05D005995 2.8e-35 152.5 165 57.0
Duzib151G0494 Durio zibethinus HOM05D004749 ORTHO05D005995 3.6e-35 152.1 165 58.8
Gohir.D09G225200 Gossypium hirsutum HOM05D004749 ORTHO05D005995 4.7e-35 151.8 125 64.8
Gorai.006G246700 Gossypium raimondii HOM05D004749 ORTHO05D005995 4.7e-35 151.8 125 64.8
Manes.09G084300 Manihot esculenta HOM05D004749 ORTHO05D005995 4.7e-35 151.8 125 72.0
TAR362G1144 Trochodendron aralioides HOM05D004749 ORTHO05D005995 4.7e-35 151.8 125 66.4
Ciclev10005025m.g Citrus clementina HOM05D004749 ORTHO05D005995 6.2e-35 151.4 147 55.8
Duzib052G0525 Durio zibethinus HOM05D004749 ORTHO05D005995 6.2e-35 151.4 125 64.8
Oeu061088.1 Olea europaea HOM05D004749 ORTHO05D005995 6.2e-35 151.4 122 67.2
EL10Ac7g16373 Beta vulgaris HOM05D004749 ORTHO05D005995 1.8e-34 149.8 125 72.8
PGR031G3778 Punica granatum HOM05D004749 ORTHO05D005995 1.8e-34 149.8 125 79.2
CANSAT11G0071 Cannabis sativa HOM05D004749 ORTHO05D005995 2.3e-34 149.4 127 66.9
Hma1.2p1_1400F.1_g280890 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 2.3e-34 149.4 146 58.2
Hund18596 Selenicereus undatus HOM05D004749 ORTHO05D005995 2.3e-34 149.4 123 75.6
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 3.1e-34 149.1 142 62.0
Atru.chr4.3050 Acer truncatum HOM05D004749 ORTHO05D005995 6.8e-34 147.9 124 63.7
Cfa014134 Carpinus fangiana HOM05D004749 ORTHO05D005995 6.8e-34 147.9 166 56.0
Glyma.17G035700 Glycine max HOM05D004749 ORTHO05D005995 6.8e-34 147.9 124 71.8
MBI19_g03265_MAGBIO Magnolia biondii HOM05D004749 ORTHO05D005995 6.8e-34 147.9 122 66.4
Manes.08G074300 Manihot esculenta HOM05D004749 ORTHO05D005995 6.8e-34 147.9 164 69.5
Hma1.2p1_0078F.1_g039880 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 8.9e-34 147.5 125 64.0
QL04p048178 Quercus lobata HOM05D004749 ORTHO05D005995 8.9e-34 147.5 125 64.0
RcHm_v2.0_Chr4g0411531 Rosa chinensis HOM05D004749 ORTHO05D005995 8.9e-34 147.5 125 63.2
SalBow1G5780 Salvia bowleyana HOM05D004749 ORTHO05D005995 1.2e-33 147.1 114 75.4
Lalb_Chr07g0181981 Lupinus albus HOM05D004749 ORTHO05D005995 1.5e-33 146.7 125 64.8
MD16G1150500 Malus domestica HOM05D004749 ORTHO05D005995 1.5e-33 146.7 125 61.6
CiPaw.02G073100 Carya illinoinensis HOM05D004749 ORTHO05D005995 3.4e-33 145.6 164 64.0
HanXRQChr17g0569351 Helianthus annuus HOM05D004749 ORTHO05D005995 3.4e-33 145.6 123 69.1
Phvul.003G116600 Phaseolus vulgaris HOM05D004749 ORTHO05D005995 3.4e-33 145.6 125 75.2
Sc17g0002650 Simmondsia chinensis HOM05D004749 ORTHO05D005995 4.4e-33 145.2 125 73.6
Aqoxy1G00958 Aquilegia oxysepala HOM05D004749 ORTHO05D005995 5.8e-33 144.8 125 68.8
Rhsim10G0104300 Rhododendron simsii HOM05D004749 ORTHO05D005995 5.8e-33 144.8 113 80.5
FAN17G3131 Fragaria x ananassa HOM05D004749 ORTHO05D005995 7.5e-33 144.4 146 56.2
Prupe.1G114400 Prunus persica HOM05D004749 ORTHO05D005995 7.5e-33 144.4 124 61.3
CSS0038246 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 9.8e-33 144.1 146 56.8
unitig_578.g15957 Utricularia gibba HOM05D004749 ORTHO05D005995 9.8e-33 144.1 114 78.1
FvH4_4g12660 Fragaria vesca HOM05D004749 ORTHO05D005995 1.7e-32 143.3 125 60.8
FAN07G1280 Fragaria x ananassa HOM05D004749 ORTHO05D005995 1.7e-32 143.3 125 60.8
FAN12G1239 Fragaria x ananassa HOM05D004749 ORTHO05D005995 1.7e-32 143.3 125 60.8
Glyma.07G237800 Glycine max HOM05D004749 ORTHO05D005995 2.2e-32 142.9 124 71.8
Sp7g19970 Schrenkiella parvula HOM05D004749 ORTHO05D005995 2.2e-32 142.9 125 65.6
CsaV3_2G009980 Cucumis sativus L. HOM05D004749 ORTHO05D005995 2.9e-32 142.5 166 54.2
CDE02G1224 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 3.7e-32 142.1 124 66.9
HanXRQChr10g0314441 Helianthus annuus HOM05D004749 ORTHO05D005995 3.7e-32 142.1 124 69.4
Carub.0007s1960 Capsella rubella HOM05D004749 ORTHO05D005995 4.9e-32 141.7 125 60.0
CiPaw.01G136300 Carya illinoinensis HOM05D004749 ORTHO05D005995 4.9e-32 141.7 125 60.0
FAN22G0862 Fragaria x ananassa HOM05D004749 ORTHO05D005995 6.4e-32 141.4 125 60.8
Lsat_1_v5_gn_9_58140 Lactuca sativa HOM05D004749 ORTHO05D005995 1.1e-31 140.6 112 72.3
ECA246G2874 Erigeron canadensis HOM05D004749 ORTHO05D005995 2.4e-31 139.4 125 68.8
arahy.Tifrunner.gnm1.ann1.CI16ME Arachis hypogaea HOM05D004749 ORTHO05D005995 4.1e-31 138.7 117 61.5
arahy.Tifrunner.gnm1.ann1.YK8CX2 Arachis hypogaea HOM05D004749 ORTHO05D005995 4.1e-31 138.7 117 61.5
Potri.008G103000 Populus trichocarpa HOM05D004749 ORTHO05D005995 4.1e-31 138.7 165 62.4
Sabra08G0077900 Salix brachista HOM05D004749 ORTHO05D005995 4.1e-31 138.7 125 61.6
Lj6C561G5 Lonicera japonica HOM05D004749 ORTHO05D005995 5.4e-31 138.3 72 97.2
BolC1t01536H Brassica oleracea HOM05D004749 ORTHO05D005995 7.0e-31 137.9 125 73.6
Cpa.g.sc106.97 Carica papaya HOM05D004749 ORTHO05D005995 7.0e-31 137.9 112 65.2
Haze_22859 Corylus avellana HOM05D004749 ORTHO05D005995 1.2e-30 137.1 164 59.8
MELO3C008635.2 Cucumis melo HOM05D004749 ORTHO05D005995 1.2e-30 137.1 164 53.0
BcaC09g51199 Brassica carinata HOM05D004749 ORTHO05D005995 1.6e-30 136.7 125 73.6
C01p15820 Brassica napus HOM05D004749 ORTHO05D005995 1.6e-30 136.7 125 73.6
AT4G21800 Arabidopsis thaliana HOM05D004749 ORTHO05D005995 3.5e-30 135.6 125 68.0
A01p13130 Brassica napus HOM05D004749 ORTHO05D005995 3.5e-30 135.6 125 72.0
BraA01t01257Z Brassica rapa HOM05D004749 ORTHO05D005995 3.5e-30 135.6 125 72.0
AUR62005917 Chenopodium quinoa HOM05D004749 ORTHO05D005995 3.5e-30 135.6 118 70.3
DCAR_026992 Daucus carota HOM05D004749 ORTHO05D005995 3.5e-30 135.6 146 70.5
Potri.010G148000 Populus trichocarpa HOM05D004749 ORTHO05D005995 3.5e-30 135.6 164 48.8
THA.LOC104827101 Tarenaya hassleriana HOM05D004749 ORTHO05D005995 4.6e-30 135.2 118 68.6
CARHR228550 Cardamine hirsuta HOM05D004749 ORTHO05D005995 6.0e-30 134.8 125 67.2
AL7G32130 Arabidopsis lyrata HOM05D004749 ORTHO05D005995 7.8e-30 134.4 125 67.2
AUR62028146 Chenopodium quinoa HOM05D004749 ORTHO05D005995 7.8e-30 134.4 109 76.1
AUR62041770 Chenopodium quinoa HOM05D004749 ORTHO05D005995 7.8e-30 134.4 109 76.1
Thhalv10025484m.g Eutrema salsugineum HOM05D004749 ORTHO05D005995 7.8e-30 134.4 125 72.8
Sabra10G0114100 Salix brachista HOM05D004749 ORTHO05D005995 1.0e-29 134.0 164 47.6
vmacro12071 Vaccinium macrocarpon HOM05D004749 ORTHO05D005995 1.0e-29 134.0 81 84.0
VMungo0720G2504 Vigna mungo HOM05D004749 ORTHO05D005995 1.0e-29 134.0 115 61.7
ClCG11G010380 Citrullus lanatus HOM05D004749 ORTHO05D005995 1.3e-29 133.7 164 51.8
Zm00001eb395880 Zea mays HOM05D004749 ORTHO05D005995 1.3e-29 133.7 123 58.5
vmacro15173 Vaccinium macrocarpon HOM05D004749 ORTHO05D005995 1.7e-29 133.3 81 82.7
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 3.0e-29 132.5 115 60.9
Medtr1g100240 Medicago truncatula HOM05D004749 ORTHO05D005995 3.0e-29 132.5 115 61.7
Actinidia14251 Actinidia chinensis HOM05D004749 ORTHO05D005995 3.9e-29 132.1 81 82.7
Sed0018873 Sechium edule HOM05D004749 ORTHO05D005995 5.0e-29 131.7 125 57.6
HPP92_008928 Vanilla planifolia HOM05D004749 ORTHO05D005995 5.0e-29 131.7 125 56.0
Lj4g0011402 Lotus japonicus HOM05D004749 ORTHO05D005995 1.1e-28 130.6 114 60.5
BcaNung02248 Brassica carinata HOM05D004749 ORTHO05D005995 3.3e-28 129.0 122 72.1
Psat6g193640 Pisum sativum HOM05D004749 ORTHO05D005995 1.2e-27 127.1 114 59.6
COL.COLO4_15791 Corchorus olitorius HOM05D004749 ORTHO05D005995 2.8e-27 125.9 124 62.1
Haze_01330 Corylus avellana HOM05D004749 ORTHO05D005995 2.8e-27 125.9 167 56.3
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 1.1e-26 124.0 114 57.0
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 4.0e-26 122.1 114 59.6
ATR0693G032 Amborella trichopoda HOM05D004749 ORTHO05D005995 3.4e-25 119.0 126 66.7
A08p15460 Brassica napus HOM05D004749 ORTHO05D005995 2.2e-24 116.3 111 55.9
Dinv15143 Davidia involucrata HOM05D004749 ORTHO05D005995 1.9e-23 113.2 68 82.4
MD13G1150100 Malus domestica HOM05D004749 ORTHO05D005995 3.2e-23 112.5 119 54.6
BcaC01g00741 Brassica carinata HOM05D004749 ORTHO05D005995 4.1e-23 112.1 150 44.7
SEGI_28650 Sequoiadendron giganteum HOM05D004749 ORTHO05D005995 2.7e-22 109.4 115 47.8
CSS0044945 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 3.5e-22 109.0 145 51.0
SalBow7G1269 Salvia bowleyana HOM05D004749 ORTHO05D005995 3.5e-22 109.0 68 79.4
DCAR_030456 Daucus carota HOM05D004749 ORTHO05D005995 6.0e-22 108.2 145 44.1
Psat1g194120 Pisum sativum HOM05D002906 ORTHO05D003211 1.1e-20 104.0 110 50.0
Mapoly0080s0030 Marchantia polymorpha HOM05D004749 ORTHO05D005995 1.5e-20 103.6 129 42.6
HanXRQChr08g0212681 Helianthus annuus HOM05D004749 ORTHO05D005995 2.5e-20 102.8 68 76.5
AagrBONN_evm.TU.Sc2ySwM_368.1659 Anthoceros agrestis HOM05D004749 ORTHO05D005995 7.3e-20 101.3 78 62.8
BraA08t33522Z Brassica rapa HOM05D004749 ORTHO05D005995 7.3e-20 101.3 92 58.7
Pp3c8_16870 Physcomitrium patens HOM05D004749 ORTHO05D005995 1.2e-19 100.5 117 42.7
Aa31LG6G3810 Aethionema arabicum HOM05D004749 ORTHO05D005995 4.0e-18 95.5 68 69.1
Psat7g201920 Pisum sativum HOM05D000835 ORTHO05D004825 2.6e-17 92.8 81 61.7
PRCOL_00000431 Prasinoderma coloniale HOM05D004749 ORTHO05D005995 8.4e-16 87.8 80 50.0
SMO271G0158 Selaginella moellendorffii HOM05D004749 ORTHO05D005995 8.4e-16 87.8 82 53.7
CBR_g44475 Chara braunii HOM05D004749 ORTHO05D005995 1.0e-13 80.9 68 52.9
Cre06.g267150 Chlamydomonas reinhardtii HOM05D004749 ORTHO05D005995 3.0e-13 79.3 78 48.7
MCO13G184 Micromonas commoda HOM05D004749 ORTHO05D005995 3.9e-13 79.0 107 43.9
C03p83720 Brassica napus HOM05D004749 ORTHO05D005995 5.1e-13 78.6 96 45.8
BolC3t20652H Brassica oleracea HOM05D004749 ORTHO05D005995 5.1e-13 78.6 96 45.8
CARHR228600 Cardamine hirsuta HOM05D004749 ORTHO05D043482 2.5e-12 76.3 55 70.9
TAR374G0424 Trochodendron aralioides HOM05D000090 ORTHO05D001322 4.7e-11 72.0 50 68.0
Haze_27364 Corylus avellana HOM05D004749 ORTHO05D005995 6.2e-11 71.6 77 46.8
CDE08G0804 Ceratophyllum demersum HOM05D004749 ORTHO05D034260 3.4e-09 65.9 116 51.7
Hma1.2p1_0013F.1_g008320 Hydrangea macrophylla HOM05D004749 ORTHO05D043482 4.4e-09 65.5 44 75.0
Cfa026321 Carpinus fangiana HOM05D004749 ORTHO05D005995 1.1e-07 60.8 102 32.4
PSO063G4024 Papaver somniferum HOM05D004749 ORTHO05D005995 5.4e-07 58.5 66 53.0


User provided reference genes

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