Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 4.3e-147 524.6 264 100.0
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 1.6e-101 373.2 263 72.6
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 1.8e-97 359.8 263 66.9
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 3.5e-96 355.5 263 70.0
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 7.7e-96 354.4 262 66.8
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.7e-95 353.2 265 67.5
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 8.5e-95 350.9 265 66.4
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 1.9e-94 349.7 267 67.4
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 3.6e-93 345.5 267 67.0
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 4.7e-93 345.1 264 67.4
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 1.0e-92 344.0 268 66.4
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 1.8e-92 343.2 242 70.2
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 2.3e-92 342.8 265 66.8
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 4.8e-90 335.1 266 63.9
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 6.3e-90 334.7 264 64.8
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 8.3e-90 334.3 264 66.7
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 8.3e-90 334.3 263 63.5
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 3.1e-89 332.4 264 63.3
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 5.4e-89 331.6 264 62.1
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 1.6e-88 330.1 261 65.5
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 5.9e-88 328.2 264 65.2
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 1.0e-87 327.4 239 69.5
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 2.9e-87 325.9 256 67.2
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 6.5e-87 324.7 269 64.3
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 6.5e-87 324.7 269 64.3
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.1e-86 323.9 256 66.8
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.9e-86 323.2 267 64.4
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 3.2e-86 322.4 256 66.8
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 4.2e-86 322.0 266 60.9
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 4.2e-86 322.0 252 65.1
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 1.6e-85 320.1 265 63.8
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 2.1e-85 319.7 264 64.0
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 3.6e-85 318.9 258 62.4
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 3.6e-85 318.9 269 63.6
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 4.7e-85 318.5 258 62.4
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 4.7e-85 318.5 246 63.8
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 6.1e-85 318.2 270 63.3
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.8e-84 316.6 267 63.3
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 2.3e-84 316.2 264 60.2
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 3.0e-84 315.8 258 62.0
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.5e-83 313.5 244 63.1
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 5.7e-83 311.6 262 62.2
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 5.7e-83 311.6 258 64.3
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 5.7e-83 311.6 246 64.6
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 7.5e-83 311.2 267 61.8
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 1.3e-82 310.5 268 60.1
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 1.3e-82 310.5 252 63.1
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 2.8e-82 309.3 263 60.8
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 2.8e-82 309.3 246 63.4
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 3.7e-82 308.9 259 62.9
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.7e-82 308.9 239 65.3
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.7e-82 308.9 239 65.3
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 4.9e-82 308.5 266 62.4
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 1.1e-81 307.4 265 61.5
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 1.4e-81 307.0 253 62.5
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 3.1e-81 305.8 267 60.7
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 5.4e-81 305.1 263 60.1
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 7.0e-81 304.7 244 63.1
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 7.0e-81 304.7 266 60.9
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 9.2e-81 304.3 263 59.3
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 1.2e-80 303.9 244 63.1
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 1.2e-80 303.9 244 63.1
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 1.2e-80 303.9 248 64.9
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 1.2e-80 303.9 243 64.2
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 1.6e-80 303.5 267 60.3
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 2.0e-80 303.1 244 62.3
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 2.0e-80 303.1 263 59.7
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 2.7e-80 302.8 258 60.5
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 2.7e-80 302.8 248 62.5
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 3.5e-80 302.4 258 62.4
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 3.5e-80 302.4 244 62.7
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 4.5e-80 302.0 264 62.1
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 4.5e-80 302.0 259 61.0
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 4.5e-80 302.0 244 62.7
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 7.7e-80 301.2 248 64.9
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.0e-79 300.8 273 59.3
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.0e-79 300.8 273 59.3
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 1.7e-79 300.1 266 60.9
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 2.3e-79 299.7 263 59.3
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 2.9e-79 299.3 254 61.0
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 6.6e-79 298.1 262 59.2
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 6.6e-79 298.1 269 59.9
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 8.6e-79 297.7 266 59.0
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 8.6e-79 297.7 253 57.7
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 1.5e-78 297.0 244 61.5
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 1.9e-78 296.6 239 62.3
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 2.5e-78 296.2 264 60.6
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 5.6e-78 295.0 243 65.0
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 9.5e-78 294.3 239 62.3
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 1.6e-77 293.5 239 62.3
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 1.6e-77 293.5 239 62.3
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 3.6e-77 292.4 267 59.9
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 1.0e-76 290.8 267 58.8
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 1.8e-76 290.0 268 59.7
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 1.2e-75 287.3 264 58.0
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 1.5e-75 287.0 247 59.1
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 2.0e-75 286.6 249 60.2
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 5.4e-73 278.5 230 61.3
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 7.0e-73 278.1 266 57.5
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 4.6e-72 275.4 265 58.1
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 7.8e-72 274.6 227 60.8
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 1.0e-71 274.2 247 56.7
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 2.1e-69 266.5 205 67.8
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 2.1e-69 266.5 245 58.8
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 2.8e-69 266.2 251 55.8
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 1.0e-68 264.2 265 56.6
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 3.4e-67 259.2 262 56.1
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 5.8e-67 258.5 251 55.4
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 2.2e-66 256.5 267 53.6
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 3.7e-66 255.8 239 56.9
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 6.4e-66 255.0 247 54.7
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 4.7e-61 238.8 205 63.4
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 6.2e-61 238.4 201 61.7
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.7e-58 230.3 169 64.5
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 1.1e-57 227.6 241 54.4
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 9.2e-57 224.6 218 56.4
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 3.5e-56 222.6 218 56.4
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 1.9e-54 216.9 239 50.2
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 9.5e-54 214.5 257 49.8
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 3.1e-52 209.5 235 47.7
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 2.8e-45 186.4 221 46.6
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 1.3e-39 167.5 213 45.1
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.3e-39 166.8 257 43.2
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 5.1e-39 165.6 188 53.7
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.1e-38 164.5 137 54.7
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.5e-38 163.3 170 50.0
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.8e-36 157.1 231 37.2
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 9.0e-36 154.8 217 42.9
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 1.2e-35 154.5 137 62.0
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.0e-35 153.7 165 49.7
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.6e-35 153.3 231 36.4
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 9.9e-35 151.4 168 47.0
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 3.8e-34 149.4 246 37.4
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 3.2e-33 146.4 231 35.5
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 8.1e-29 131.7 159 52.8
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 4.0e-28 129.4 268 34.3
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 1.1e-20 104.8 80 65.0
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 7.1e-17 92.0 77 61.0
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 7.1e-17 92.0 77 61.0
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 3.7e-13 79.7 165 33.3
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.6e-08 64.3 78 51.3
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 2.7e-08 63.5 76 43.4


User provided reference genes

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