Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 0.0e+00 1269.6 643 100.0
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 5.1e-202 708.4 603 64.2
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 1.6e-200 703.4 581 65.9
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 3.7e-200 702.2 604 62.4
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 4.5e-198 695.3 604 65.2
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 7.4e-193 677.9 605 63.1
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 3.7e-192 675.6 601 63.2
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 3.6e-187 659.1 604 60.9
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 4.7e-187 658.7 623 58.1
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 6.3e-184 648.3 603 61.0
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 9.4e-180 634.4 592 59.5
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 4.0e-178 629.0 598 59.0
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 3.3e-177 625.9 604 59.3
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 7.4e-177 624.8 597 59.6
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 4.1e-175 619.0 618 58.1
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 9.1e-175 617.8 594 59.3
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 1.0e-173 614.4 606 57.4
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 3.2e-172 609.4 606 57.6
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 5.5e-172 608.6 621 56.8
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 8.0e-171 604.7 609 58.3
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 1.4e-170 604.0 650 53.7
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 2.3e-170 603.2 606 55.8
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 8.8e-170 601.3 770 47.4
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.2e-169 600.9 650 54.3
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 4.4e-169 599.0 603 55.9
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 7.5e-169 598.2 603 58.7
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 4.8e-168 595.5 589 56.2
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 1.8e-167 593.6 599 55.1
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 5.9e-166 588.6 603 55.4
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.9e-165 586.3 636 54.1
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 8.5e-165 584.7 603 57.9
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 2.7e-163 579.7 604 56.3
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 1.0e-162 577.8 604 54.8
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 2.6e-161 573.2 611 55.2
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 4.4e-161 572.4 603 57.0
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.1e-159 567.8 603 55.2
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 1.9e-156 557.0 619 54.4
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 3.3e-156 556.2 602 54.3
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 3.3e-156 556.2 602 53.3
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 9.5e-156 554.7 608 55.4
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 2.1e-155 553.5 605 54.9
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 8.0e-155 551.6 603 53.7
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 5.7e-153 545.4 600 52.3
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 5.7e-153 545.4 606 54.3
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 1.7e-152 543.9 599 52.4
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 2.2e-152 543.5 605 54.2
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 4.9e-152 542.3 612 53.8
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 4.1e-151 539.3 617 53.0
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 9.2e-151 538.1 604 52.8
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 1.2e-150 537.7 594 52.9
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 4.6e-150 535.8 590 53.2
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 5.9e-150 535.4 599 52.8
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 5.9e-150 535.4 602 53.3
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 1.3e-149 534.3 602 51.8
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 1.2e-147 527.7 614 52.3
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 2.8e-147 526.6 578 53.5
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 4.7e-147 525.8 589 53.7
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 2.3e-146 523.5 605 52.2
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 3.1e-146 523.1 616 51.9
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 8.9e-146 521.5 604 52.5
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 1.2e-145 521.2 623 51.0
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 1.5e-145 520.8 558 53.8
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 7.5e-145 518.5 620 51.8
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 2.2e-144 516.9 620 51.9
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 3.7e-144 516.2 587 54.0
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.4e-143 513.5 599 50.9
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 4.1e-143 512.7 619 51.7
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 6.0e-142 508.8 612 50.3
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 7.8e-142 508.4 617 50.4
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 7.8e-142 508.4 599 51.4
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 1.3e-141 507.7 604 51.7
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 1.7e-141 507.3 589 50.1
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 6.6e-141 505.4 593 53.0
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 2.5e-140 503.4 604 50.7
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 3.3e-140 503.1 552 53.8
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.2e-139 501.1 602 50.8
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 8.9e-138 495.0 606 49.7
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 1.9e-135 487.3 643 47.9
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 9.5e-132 474.9 542 51.5
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 2.1e-131 473.8 542 52.0
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 2.1e-131 473.8 597 48.7
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 5.2e-130 469.2 578 50.5
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 7.1e-127 458.8 518 50.8
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 9.2e-127 458.4 570 49.6
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 1.2e-126 458.0 533 51.6
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 1.0e-125 454.9 608 47.2
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 9.6e-124 448.4 607 46.6
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 1.2e-123 448.0 609 47.0
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 3.6e-123 446.4 589 46.9
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 4.7e-123 446.0 608 47.0
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 1.1e-122 444.9 609 46.8
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 2.4e-122 443.7 608 46.9
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 6.8e-122 442.2 608 46.4
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 6.8e-122 442.2 551 48.8
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 1.5e-121 441.0 501 49.9
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 2.0e-121 440.7 607 45.8
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 1.7e-120 437.6 632 46.2
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 1.7e-120 437.6 627 44.8
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 8.4e-120 435.3 599 46.7
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 3.5e-118 429.9 621 45.4
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 6.0e-118 429.1 596 45.1
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 4.8e-115 419.5 604 45.4
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 4.4e-113 412.9 499 47.7
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 3.8e-112 409.8 589 46.0
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 2.4e-111 407.1 598 45.7
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 1.7e-109 401.0 598 45.3
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 1.5e-108 397.9 585 45.5
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 3.3e-108 396.7 584 45.9
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 6.2e-107 392.5 599 45.4
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.3e-104 384.8 528 44.7
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 4.9e-104 382.9 543 47.9
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 3.9e-101 373.2 618 42.2
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 2.5e-95 354.0 346 56.9
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 1.6e-94 351.3 638 39.7
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 5.7e-92 342.8 606 40.4
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 1.4e-87 328.2 629 39.1
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 2.1e-86 324.3 591 39.8
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.7e-78 297.4 424 46.0
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 5.0e-72 276.6 648 35.3
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 1.1e-68 265.4 544 37.7
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 8.0e-62 242.7 303 50.8
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.3e-60 237.3 318 47.8
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 5.7e-52 209.9 615 31.4
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 1.3e-51 208.8 241 49.4
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 2.8e-51 207.6 496 34.7
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 7.0e-50 203.0 498 32.7
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.3e-45 188.0 235 47.2
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 7.5e-28 129.8 250 38.0
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 5.4e-26 123.6 107 57.0
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 2.0e-20 105.1 416 27.2
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.7e-19 102.1 83 59.0
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 1.0e-16 92.8 87 55.2
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 8.9e-13 79.7 217 26.7
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 7.6e-12 76.6 113 45.1
CSS0012295 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 1.9e-10 72.0 94 50.0
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 3.2e-10 71.2 59 55.9
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 1.2e-09 69.3 202 31.7
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 3.0e-08 64.7 135 37.0
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 3.0e-08 64.7 135 37.0
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 3.0e-08 64.7 135 37.0


User provided reference genes

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