Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 7.6e-200 700.3 352 100.0
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 6.8e-140 501.1 317 77.3
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 3.0e-135 485.7 324 74.1
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 3.9e-135 485.3 325 74.8
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.2e-133 480.3 297 78.8
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.1e-133 479.6 355 70.4
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 2.8e-133 479.2 331 72.2
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 2.8e-133 479.2 337 72.7
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 4.7e-133 478.4 357 70.3
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 4.7e-133 478.4 304 76.3
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 1.4e-132 476.9 331 73.7
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 9.8e-131 470.7 340 71.2
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 3.7e-130 468.8 298 77.2
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 8.3e-130 467.6 298 75.8
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.1e-129 467.2 298 76.5
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 1.9e-129 466.5 325 72.6
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 3.2e-129 465.7 298 76.2
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 9.2e-129 464.2 330 70.3
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 2.7e-128 462.6 332 71.7
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 3.5e-128 462.2 293 75.1
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 3.5e-128 462.2 298 75.5
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 3.5e-128 462.2 320 73.1
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 1.0e-127 460.7 334 70.4
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 3.9e-127 458.8 302 75.2
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.5e-126 456.8 325 69.8
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 1.9e-126 456.4 308 73.1
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.9e-126 456.4 325 69.8
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 2.5e-126 456.1 338 67.5
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 3.6e-125 452.2 344 67.2
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 4.7e-125 451.8 359 67.1
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 4.7e-125 451.8 341 67.4
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 1.4e-124 450.3 316 71.5
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 2.3e-124 449.5 330 69.7
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.1e-124 449.1 358 65.4
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 8.9e-124 447.6 375 64.0
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.2e-123 447.2 297 73.7
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 2.0e-123 446.4 336 70.2
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 5.8e-123 444.9 310 71.9
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 9.9e-123 444.1 336 69.9
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 9.9e-123 444.1 325 69.2
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 1.7e-122 443.4 348 66.4
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 2.9e-122 442.6 328 69.2
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.9e-122 442.6 320 69.7
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.7e-122 442.2 365 66.0
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 8.4e-122 441.0 339 68.1
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 2.4e-121 439.5 336 68.5
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 7.1e-121 438.0 329 68.4
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.6e-120 436.8 296 72.0
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 4.6e-120 435.3 324 68.2
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 1.3e-119 433.7 351 63.2
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.0e-119 432.6 288 72.6
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 3.9e-119 432.2 300 70.7
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 5.1e-119 431.8 313 70.0
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 8.6e-119 431.0 326 66.6
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.1e-118 430.6 325 66.5
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 1.9e-118 429.9 324 67.3
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 3.3e-118 429.1 297 70.0
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 7.3e-118 427.9 304 69.7
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 1.2e-117 427.2 314 69.7
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 2.1e-117 426.4 352 65.9
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 2.1e-117 426.4 359 64.3
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 6.2e-117 424.9 314 68.5
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 2.4e-116 422.9 273 74.4
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 3.1e-116 422.5 303 67.7
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 4.0e-116 422.2 326 66.3
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 6.8e-116 421.4 312 68.3
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 2.6e-115 419.5 297 70.7
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 4.4e-115 418.7 340 64.7
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.4e-113 413.7 285 71.2
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.9e-113 413.3 298 68.5
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 3.2e-113 412.5 347 62.5
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 4.2e-113 412.1 307 68.4
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 2.1e-112 409.8 326 63.8
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 2.7e-112 409.5 284 70.4
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 2.7e-112 409.5 338 62.1
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.0e-111 407.5 340 63.5
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.0e-111 407.5 291 67.4
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 1.3e-111 407.1 308 65.9
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 1.7e-111 406.8 308 67.5
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 2.3e-111 406.4 266 71.1
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 3.0e-111 406.0 350 63.7
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 5.1e-111 405.2 405 59.0
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 6.6e-111 404.8 297 66.3
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 2.5e-110 402.9 297 67.0
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 5.6e-110 401.7 313 65.8
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 1.3e-109 400.6 315 64.4
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 2.1e-109 399.8 306 65.7
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 2.1e-109 399.8 304 65.8
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 6.2e-109 398.3 297 65.7
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.4e-108 396.4 326 62.0
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 4.0e-108 395.6 340 61.8
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 9.0e-108 394.4 304 65.8
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 2.0e-107 393.3 299 66.9
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 3.4e-107 392.5 271 69.7
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 7.6e-107 391.3 317 61.8
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 9.9e-107 391.0 353 58.9
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.3e-106 390.6 331 62.2
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 2.2e-106 389.8 348 58.9
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 2.9e-106 389.4 350 58.9
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 1.1e-105 387.5 328 61.9
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 1.1e-105 387.5 288 66.0
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 4.2e-105 385.6 335 60.9
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 5.4e-105 385.2 236 78.8
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 7.1e-105 384.8 347 59.7
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 1.6e-104 383.6 324 61.1
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 2.1e-104 383.3 310 62.6
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 2.7e-104 382.9 355 59.4
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.7e-103 380.2 402 54.5
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 3.9e-103 379.0 309 60.5
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 1.9e-102 376.7 358 57.0
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.8e-101 372.1 347 55.3
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 5.3e-100 368.6 293 64.2
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 9.0e-100 367.9 343 57.4
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 2.7e-96 356.3 343 58.6
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 2.4e-92 343.2 267 65.2
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 6.9e-92 341.7 287 61.7
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 5.8e-91 338.6 332 54.2
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 7.9e-88 328.2 254 65.7
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 7.9e-88 328.2 299 58.5
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 4.8e-85 318.9 262 58.4
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 1.1e-84 317.8 350 51.1
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.4e-84 317.4 276 54.7
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 1.8e-84 317.0 292 56.5
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 1.0e-82 311.2 297 54.9
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.5e-81 306.6 328 53.0
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 5.5e-81 305.4 328 52.4
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 7.2e-81 305.1 188 76.6
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 1.3e-79 300.8 266 55.3
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 5.1e-79 298.9 337 51.3
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 6.9e-76 288.5 253 62.8
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 9.0e-76 288.1 216 70.8
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 1.2e-75 287.7 184 76.1
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 2.0e-75 287.0 346 48.6
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 3.4e-75 286.2 343 49.6
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 8.5e-74 281.6 352 47.7
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 6.1e-72 275.4 285 48.4
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 5.1e-71 272.3 311 47.9
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 2.5e-70 270.0 266 50.8
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.7e-70 268.9 189 70.4
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.4e-70 268.5 189 69.8
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.2e-67 261.2 178 73.0
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.2e-67 261.2 179 71.5
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 1.7e-66 257.3 184 70.7
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 6.5e-66 255.4 227 60.4
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.4e-65 254.2 343 44.9
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 1.4e-65 254.2 236 60.2
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 7.9e-64 248.4 180 67.2
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 1.0e-63 248.1 195 67.7
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 2.3e-63 246.9 349 42.7
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 5.3e-60 235.7 180 63.3
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.6e-59 233.4 330 45.5
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 5.0e-58 229.2 536 31.2
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 4.7e-56 222.6 200 59.0
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 9.1e-52 208.4 179 65.9
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 1.1e-49 201.4 262 39.7
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 5.5e-49 199.1 309 38.5
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 3.0e-47 193.4 354 32.5
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 9.8e-46 188.3 113 73.5
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 2.8e-45 186.8 112 71.4
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 6.3e-45 185.7 140 64.3
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.5e-43 179.5 144 64.6
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.9e-42 176.8 107 74.8
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 7.2e-41 172.2 111 69.4
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 6.1e-40 169.1 110 73.6
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 5.7e-38 162.5 106 75.5
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.5e-33 147.9 131 55.0
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 3.3e-33 146.7 96 70.8
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.5e-33 145.2 95 71.6
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 2.1e-32 144.1 142 54.2
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.5e-30 135.6 190 45.3
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 9.5e-25 118.6 90 62.2
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 5.2e-23 112.8 91 62.6
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 4.1e-20 103.2 73 61.6
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.0e-18 96.3 51 82.4
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 3.3e-17 93.6 56 75.0
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.8e-16 90.5 68 61.8
CSS0047531 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D112748 2.0e-14 84.3 84 60.7
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 5.4e-12 76.3 51 68.6
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 5.1e-10 69.7 45 71.1
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 2.5e-09 67.4 43 72.1
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 2.1e-08 64.3 41 73.2


User provided reference genes

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