Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 0.0e+00 1187.2 605 100.0
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 6.0e-245 850.9 653 70.3
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.7e-244 849.4 622 72.7
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.5e-243 846.3 656 70.7
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 2.8e-242 842.0 649 69.2
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.0e-240 835.9 652 68.6
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 1.1e-238 830.1 644 69.1
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.1e-237 825.9 649 68.0
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 4.6e-237 824.7 645 68.4
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 7.9e-237 823.9 672 67.1
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.4e-233 813.1 648 67.4
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 3.1e-233 812.0 642 67.0
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 6.9e-233 810.8 676 65.5
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 1.5e-232 809.7 648 67.1
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 5.8e-232 807.7 648 67.6
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 7.6e-232 807.4 651 66.7
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 6.5e-231 804.3 648 66.2
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 1.9e-230 802.7 648 65.7
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 7.1e-230 800.8 648 66.8
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.2e-229 800.0 645 66.0
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 3.5e-229 798.5 683 63.0
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 1.8e-228 796.2 643 66.3
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 7.4e-227 790.8 650 65.8
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 1.6e-226 789.6 648 64.8
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 6.3e-226 787.7 648 66.4
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 6.3e-226 787.7 645 65.0
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 3.1e-225 785.4 651 65.3
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 3.4e-224 781.9 648 65.3
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 4.5e-224 781.6 648 64.8
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 3.2e-222 775.4 649 64.7
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 9.3e-222 773.9 649 64.9
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.2e-221 773.5 652 65.0
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.3e-220 770.0 649 64.9
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 5.1e-220 768.1 648 64.0
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 6.7e-220 767.7 632 65.7
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 8.7e-220 767.3 650 63.5
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.5e-219 766.5 648 64.7
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.5e-219 765.8 649 65.3
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 2.5e-219 765.8 652 65.5
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 5.7e-219 764.6 644 64.9
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 1.6e-218 763.1 653 63.4
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 6.3e-218 761.1 648 64.0
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 8.2e-218 760.8 649 63.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.1e-217 760.4 667 63.3
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 3.1e-217 758.8 648 63.6
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 6.9e-217 757.7 649 63.2
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 6.9e-217 757.7 648 64.0
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 9.0e-217 757.3 648 63.1
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.6e-216 755.7 653 64.3
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.6e-216 755.7 646 64.6
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.6e-216 755.7 649 63.0
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 7.7e-216 754.2 646 64.6
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.7e-215 753.1 649 62.9
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.2e-215 752.7 629 65.7
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.9e-214 749.6 648 63.7
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 2.1e-213 746.1 654 61.3
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 2.1e-213 746.1 651 63.6
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 3.6e-213 745.3 650 61.5
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 3.0e-212 742.3 656 62.5
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 5.1e-212 741.5 653 62.6
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 6.7e-212 741.1 674 61.9
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 8.8e-212 740.7 639 63.1
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 3.3e-211 738.8 649 61.6
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 1.3e-210 736.9 656 60.8
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 4.8e-210 734.9 655 60.8
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 6.3e-210 734.6 653 61.7
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 1.4e-209 733.4 650 61.1
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 1.4e-209 733.4 657 60.7
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 5.3e-209 731.5 655 60.3
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.5e-208 729.9 647 61.4
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.5e-208 729.9 627 63.3
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 2.0e-208 729.6 645 63.1
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 3.4e-208 728.8 657 60.4
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 3.4e-208 728.8 648 60.6
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 1.3e-207 726.9 638 61.8
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 2.2e-207 726.1 655 60.3
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 3.8e-207 725.3 646 61.6
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 3.8e-207 725.3 648 60.8
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 5.0e-207 724.9 646 61.6
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.9e-206 723.0 646 61.6
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 2.5e-206 722.6 648 61.3
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 2.5e-206 722.6 651 60.5
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 3.2e-206 722.2 648 60.8
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.6e-205 719.9 647 62.9
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 2.7e-205 719.2 645 60.6
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 6.1e-205 718.0 651 59.9
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 7.9e-205 717.6 651 60.2
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 1.0e-204 717.2 651 60.2
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 3.0e-204 715.7 651 60.2
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 6.7e-204 714.5 659 59.6
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 8.8e-204 714.1 646 60.4
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 1.1e-203 713.8 644 60.2
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 1.5e-203 713.4 645 59.7
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 2.0e-203 713.0 648 59.9
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 2.6e-203 712.6 651 60.1
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 3.3e-203 712.2 651 60.4
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.8e-201 706.4 653 58.8
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 5.3e-201 704.9 648 59.7
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 9.1e-201 704.1 646 59.8
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 2.0e-200 703.0 648 59.1
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.7e-199 699.9 656 58.8
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 6.5e-199 698.0 650 59.8
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 8.5e-199 697.6 652 59.0
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 2.5e-198 696.0 647 59.2
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.8e-196 689.9 677 57.6
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.7e-194 683.3 624 62.5
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 2.4e-193 679.5 659 58.1
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 7.7e-192 674.5 663 57.9
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 6.5e-191 671.4 601 63.2
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.5e-190 668.3 552 66.5
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.0e-188 664.1 645 56.9
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.3e-186 657.1 559 64.4
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.8e-186 655.2 652 55.8
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 2.2e-183 646.4 651 55.5
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 1.1e-182 644.0 514 68.9
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.5e-182 642.9 580 62.2
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.1e-181 639.8 649 56.2
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.5e-179 633.6 567 62.6
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 8.0e-173 611.3 650 54.8
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 7.0e-169 598.2 646 54.5
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.2e-168 597.4 644 52.5
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 2.5e-166 589.7 654 52.0
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.2e-165 587.4 630 54.1
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 5.2e-164 582.0 587 57.2
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 7.0e-161 571.6 652 50.9
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 1.3e-159 567.4 648 50.3
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 7.3e-158 561.6 493 61.3
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 2.8e-157 559.7 561 58.1
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 4.0e-156 555.8 587 54.2
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.3e-143 513.5 545 54.1
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.2e-141 507.7 337 74.5
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.7e-135 487.3 656 44.4
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 8.2e-117 425.2 832 35.8
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.1e-116 423.3 263 81.0
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.9e-114 416.0 261 80.1
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 9.1e-100 368.6 363 56.7
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 1.4e-63 248.4 505 37.4
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 2.7e-59 234.2 186 63.4
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.7e-50 204.9 185 57.8
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.4e-44 185.3 121 72.7
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.1e-41 175.6 207 50.7
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 4.7e-40 170.2 174 56.3
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 1.8e-39 168.3 138 64.5
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 6.8e-39 166.4 122 68.0
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 1.7e-29 135.2 274 38.3
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 9.2e-28 129.4 168 45.2
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 6.0e-27 126.7 121 56.2
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 3.2e-20 104.4 209 38.8
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 4.2e-20 104.0 161 41.6
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 8.4e-13 79.7 130 40.8
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 1.1e-12 79.3 48 75.0
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.2e-12 77.8 47 70.2
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.2e-12 77.8 47 70.2
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 4.2e-12 77.4 54 72.2
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 7.1e-12 76.6 167 34.7
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 7.9e-11 73.2 80 56.2
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.0e-10 72.8 51 68.6
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.8e-10 72.0 112 44.6
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.3e-09 67.4 37 86.5
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 5.8e-06 57.0 63 50.8


User provided reference genes

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