Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 6.2e-268 927.2 572 100.0
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 1.1e-99 368.2 675 43.4
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.1e-86 325.1 653 40.9
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 1.2e-85 321.6 619 44.7
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 2.8e-82 310.5 677 39.6
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 3.7e-79 300.1 685 38.7
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 2.0e-72 277.7 634 40.2
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 5.8e-72 276.2 657 37.7
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 4.1e-70 270.0 675 36.0
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 2.6e-64 250.8 677 36.2
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 3.2e-62 243.8 673 34.3
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 4.2e-62 243.4 668 33.8
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 7.1e-62 242.7 652 36.3
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 2.7e-61 240.7 652 35.4
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 3.5e-61 240.4 686 36.0
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 3.5e-61 240.4 679 34.2
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 3.5e-61 240.4 421 46.1
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.7e-60 238.0 664 34.9
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 5.1e-60 236.5 662 37.0
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.5e-59 234.2 687 36.7
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.6e-58 230.3 657 34.4
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 8.1e-58 229.2 662 33.7
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 4.0e-57 226.9 638 34.5
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 1.2e-56 225.3 679 35.1
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 2.6e-56 224.2 649 33.7
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 8.4e-55 219.2 693 35.1
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 7.1e-54 216.1 673 34.2
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 7.1e-54 216.1 529 36.5
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 4.8e-50 203.4 655 33.1
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.1e-49 202.2 669 32.1
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 1.4e-49 201.8 642 33.8
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 2.4e-49 201.1 669 32.0
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.1e-49 200.7 670 32.5
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 4.0e-49 200.3 650 32.3
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 1.5e-48 198.4 638 33.5
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 2.0e-48 198.0 683 34.1
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 2.6e-48 197.6 672 32.6
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 5.8e-48 196.4 611 33.4
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.3e-47 195.3 303 45.5
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.7e-47 194.9 647 34.5
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 1.7e-47 194.9 678 33.5
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.8e-47 193.7 641 33.5
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 1.1e-46 192.2 649 31.9
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.4e-46 191.8 673 34.3
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 2.4e-46 191.0 640 32.5
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 3.2e-46 190.7 665 32.2
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 3.2e-46 190.7 664 31.9
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 4.2e-46 190.3 397 38.5
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 1.2e-45 188.7 641 32.3
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 1.6e-45 188.3 652 32.7
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 2.1e-45 188.0 687 31.4
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 1.5e-43 181.8 670 31.5
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 3.3e-43 180.6 648 32.4
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 5.6e-43 179.9 700 31.0
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.6e-43 179.9 679 31.2
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 7.4e-43 179.5 573 33.2
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.3e-42 178.7 477 35.8
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 2.1e-42 177.9 582 34.7
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 2.1e-42 177.9 683 31.6
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.8e-42 177.6 659 33.5
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 1.4e-41 175.3 677 31.6
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 3.1e-41 174.1 643 31.6
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 1.5e-40 171.8 560 32.7
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 4.5e-40 170.2 644 30.3
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 1.3e-39 168.7 703 30.9
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 2.2e-39 167.9 651 31.5
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 1.1e-38 165.6 637 30.8
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 2.5e-38 164.5 567 32.6
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 5.5e-38 163.3 581 32.2
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 9.3e-38 162.5 649 30.4
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 2.7e-37 161.0 645 30.1
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 3.5e-37 160.6 666 31.8
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 7.9e-37 159.5 681 30.1
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 2.3e-36 157.9 632 31.5
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 2.3e-36 157.9 679 30.8
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 2.3e-36 157.9 705 29.8
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 3.0e-36 157.5 644 30.4
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 8.7e-36 156.0 668 30.5
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.7e-36 156.0 659 32.2
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.7e-35 153.3 663 29.0
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 9.6e-35 152.5 664 30.0
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 9.6e-35 152.5 669 31.5
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 1.3e-34 152.1 659 30.8
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 1.3e-34 152.1 656 30.3
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.6e-34 151.8 641 31.7
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.4e-33 147.9 599 31.7
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 3.1e-33 147.5 679 30.2
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 5.3e-33 146.7 704 31.7
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 5.3e-33 146.7 606 28.1
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.2e-32 145.6 554 31.2
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 1.3e-31 142.1 433 33.7
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 1.7e-31 141.7 690 29.7
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.9e-30 138.3 660 33.5
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 4.6e-29 133.7 646 28.3
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 6.1e-29 133.3 657 31.4
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.3e-28 132.1 718 27.9
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 3.9e-28 130.6 176 48.9
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 5.1e-28 130.2 379 36.7
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 7.4e-27 126.3 162 52.5
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 9.7e-27 125.9 661 32.5
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 2.2e-26 124.8 309 36.9
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 3.7e-26 124.0 565 29.0
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 4.8e-26 123.6 653 28.0
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.4e-25 122.1 643 27.4
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.4e-25 122.1 528 30.5
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 3.1e-25 120.9 262 38.2
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.2e-24 119.0 610 29.3
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 1.0e-23 115.9 581 28.6
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 8.5e-23 112.8 264 36.0
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 7.2e-22 109.8 632 28.8
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 1.0e-20 105.9 635 27.4
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.8e-20 105.1 272 37.1
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 6.7e-20 103.2 340 36.2
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 1.5e-19 102.1 518 27.8
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 2.0e-19 101.7 400 28.8
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 3.3e-19 100.9 77 67.5
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 4.3e-19 100.5 648 25.8
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.2e-18 98.2 235 38.3
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 2.2e-18 98.2 235 38.3
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 2.8e-18 97.8 174 40.8
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 4.8e-18 97.1 159 45.3
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 6.3e-18 96.7 658 27.5
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 1.8e-17 95.1 636 26.7
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 3.1e-17 94.4 558 27.2
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 5.3e-17 93.6 517 26.7
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 9.1e-17 92.8 632 25.6
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 3.8e-15 87.4 597 26.3
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 5.0e-15 87.0 512 26.8
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 4.2e-14 84.0 291 31.3
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.4e-14 82.8 54 81.5
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 2.1e-13 81.6 527 26.2
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.1e-13 81.6 55 78.2
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.7e-13 81.3 62 71.0
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.7e-13 81.3 54 79.6
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.1e-13 80.1 62 71.0
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 6.1e-13 80.1 548 26.1
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.9e-13 79.7 50 84.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.3e-12 78.2 50 82.0
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 3.9e-12 77.4 619 26.5
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 8.8e-12 76.3 452 27.7
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 8.8e-12 76.3 87 51.7
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.4e-11 73.2 46 80.4
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 9.7e-11 72.8 46 80.4
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 9.7e-11 72.8 257 33.1
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 2.2e-10 71.6 51 72.5
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.7e-10 70.9 46 78.3
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 4.8e-10 70.5 336 26.5
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 4.8e-10 70.5 342 27.5
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.8e-10 70.5 46 78.3
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 8.2e-10 69.7 290 29.0
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 1.4e-09 68.9 366 26.2
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.2e-08 65.9 156 34.0
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 1.0e-07 62.8 522 25.3
CDE04G1765 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.3e-07 62.4 159 39.0
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.8e-07 60.8 39 76.9
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.0e-07 60.5 54 66.7
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-06 59.3 39 74.4
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.5e-06 58.9 177 29.9
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 1.9e-06 58.5 37 78.4
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.2e-06 57.8 39 71.8
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 5.5e-06 57.0 37 75.7
Gorai.004G113400 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.5e-06 57.0 62 61.3
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.2e-06 56.6 39 71.8
Gohir.D01G077750 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.4e-06 56.2 39 71.8


User provided reference genes

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