Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A63T29 Lonicera japonica HOM05D002525 ORTHO05D002727 2.0e-55 218.8 105 100.0
CSS0033500 Camellia sinensis var. sinensis HOM05D002525 ORTHO05D002727 1.2e-18 96.7 74 55.4
CSS0039690 Camellia sinensis var. sinensis HOM05D002525 ORTHO05D002727 1.5e-18 96.3 74 54.1
GSVIVG01013557001 Vitis vinifera HOM05D002525 ORTHO05D002727 4.8e-17 91.3 73 58.9
Dinv22676 Davidia involucrata HOM05D002525 ORTHO05D002727 8.3e-17 90.5 73 57.5
Ciclev10021185m.g Citrus clementina HOM05D002525 ORTHO05D002727 4.5e-15 84.7 93 47.3
Manes.04G049700 Manihot esculenta HOM05D002525 ORTHO05D002727 1.0e-14 83.6 68 54.4
Sabra02G0175900 Salix brachista HOM05D002525 ORTHO05D002727 5.0e-14 81.3 73 47.9
Prupe.1G185800 Prunus persica HOM05D002525 ORTHO05D002727 8.5e-14 80.5 73 52.1
Potri.002G230700 Populus trichocarpa HOM05D002525 ORTHO05D002727 1.5e-13 79.7 73 47.9
Thecc.04G183400 Theobroma cacao HOM05D002525 ORTHO05D002727 1.5e-13 79.7 70 51.4
Cc03_g11230 Coffea canephora HOM05D002525 ORTHO05D002727 1.9e-13 79.3 71 49.3
Hma1.2p1_0597F.1_g186370 Hydrangea macrophylla HOM05D002525 ORTHO05D002727 2.5e-13 79.0 68 48.5
Sabra14G0115300 Salix brachista HOM05D002525 ORTHO05D002727 2.5e-13 79.0 73 46.6
MELO3C017686.2 Cucumis melo HOM05D002525 ORTHO05D002727 7.2e-13 77.4 102 37.3
CsaV3_4G003690 Cucumis sativus L. HOM05D002525 ORTHO05D002727 7.2e-13 77.4 102 37.3
Duzib151G0447 Durio zibethinus HOM05D002525 ORTHO05D002727 1.6e-12 76.3 75 46.7
FAN17G1718 Fragaria x ananassa HOM05D002525 ORTHO05D002727 2.7e-12 75.5 73 50.7
QL10p046294 Quercus lobata HOM05D002525 ORTHO05D002727 2.7e-12 75.5 73 46.6
RcHm_v2.0_Chr4g0408711 Rosa chinensis HOM05D002525 ORTHO05D002727 2.7e-12 75.5 73 50.7
ClCG07G016560 Citrullus lanatus HOM05D002525 ORTHO05D002727 3.6e-12 75.1 73 43.8
RcHm_v2.0_Chr1g0335941 Rosa chinensis HOM05D002525 ORTHO05D002727 1.0e-11 73.6 73 50.7
FvH4_4g11600 Fragaria vesca HOM05D002525 ORTHO05D002727 1.4e-11 73.2 73 49.3
FAN12G1140 Fragaria x ananassa HOM05D002525 ORTHO05D002727 1.4e-11 73.2 73 49.3
FAN12G2385 Fragaria x ananassa HOM05D002525 ORTHO05D002727 1.4e-11 73.2 73 49.3
FAN22G1390 Fragaria x ananassa HOM05D002525 ORTHO05D002727 1.4e-11 73.2 73 49.3
Aa31LG10G13660 Aethionema arabicum HOM05D002525 ORTHO05D002727 1.8e-11 72.8 72 47.2
CARHR169680 Cardamine hirsuta HOM05D002525 ORTHO05D002727 1.8e-11 72.8 72 47.2
Ca_06229_v3 Cicer arietinum L. HOM05D002525 ORTHO05D002727 1.8e-11 72.8 76 40.8
COL.COLO4_24369 Corchorus olitorius HOM05D002525 ORTHO05D002727 1.8e-11 72.8 75 44.0
Potri.014G151700 Populus trichocarpa HOM05D002525 ORTHO05D002727 1.8e-11 72.8 73 45.2
Sp5g03800 Schrenkiella parvula HOM05D002525 ORTHO05D002727 1.8e-11 72.8 72 48.6
Atru.chr3.1641 Acer truncatum HOM05D002525 ORTHO05D002727 2.3e-11 72.4 73 43.8
THA.LOC104803553 Tarenaya hassleriana HOM05D002525 ORTHO05D002727 2.3e-11 72.4 72 47.2
arahy.Tifrunner.gnm1.ann1.8GR7XD Arachis hypogaea HOM05D002525 ORTHO05D002727 3.0e-11 72.0 73 41.1
arahy.Tifrunner.gnm1.ann1.RBM2HP Arachis hypogaea HOM05D002525 ORTHO05D002727 3.0e-11 72.0 73 41.1
Thhalv10005960m.g Eutrema salsugineum HOM05D002525 ORTHO05D002727 3.0e-11 72.0 72 47.2
A09p51610 Brassica napus HOM05D002525 ORTHO05D002727 4.0e-11 71.6 72 47.2
BraA09t40600Z Brassica rapa HOM05D002525 ORTHO05D002727 4.0e-11 71.6 72 47.2
RcHm_v2.0_Chr1g0338021 Rosa chinensis HOM05D002525 ORTHO05D002727 4.0e-11 71.6 68 52.9
BraA07t30105Z Brassica rapa HOM05D002525 ORTHO05D002727 5.2e-11 71.2 72 48.6
A07p24600 Brassica napus HOM05D002525 ORTHO05D002727 6.8e-11 70.9 72 48.6
C06p25940 Brassica napus HOM05D002525 ORTHO05D002727 6.8e-11 70.9 72 48.6
BolC6t37765H Brassica oleracea HOM05D002525 ORTHO05D002727 6.8e-11 70.9 72 48.6
Gohir.1Z049479 Gossypium hirsutum HOM05D002525 ORTHO05D002727 6.8e-11 70.9 75 40.0
Gorai.009G350800 Gossypium raimondii HOM05D002525 ORTHO05D002727 6.8e-11 70.9 75 40.0
AL5G41180 Arabidopsis lyrata HOM05D002525 ORTHO05D002727 8.8e-11 70.5 72 47.2
AT3G59300 Arabidopsis thaliana HOM05D002525 ORTHO05D002727 8.8e-11 70.5 72 47.2
C08p34380 Brassica napus HOM05D002525 ORTHO05D002727 8.8e-11 70.5 72 45.8
BolC8t51037H Brassica oleracea HOM05D002525 ORTHO05D002727 8.8e-11 70.5 72 45.8
Actinidia35898 Actinidia chinensis HOM05D002525 ORTHO05D002727 1.2e-10 70.1 75 46.7
Gohir.D05G326200 Gossypium hirsutum HOM05D002525 ORTHO05D002727 1.2e-10 70.1 75 40.0
vmacro00574 Vaccinium macrocarpon HOM05D002525 ORTHO05D002727 1.2e-10 70.1 74 47.3
BcaC07g40463 Brassica carinata HOM05D002525 ORTHO05D002727 1.5e-10 69.7 72 45.8
ECA248G3080 Erigeron canadensis HOM05D002525 ORTHO05D002727 1.5e-10 69.7 73 45.2
BcaC07g40321 Brassica carinata HOM05D002525 ORTHO05D002727 2.0e-10 69.3 72 44.4
Carub.0005s2604 Capsella rubella HOM05D002525 ORTHO05D002727 2.0e-10 69.3 72 45.8
CANSAT78G0936 Cannabis sativa HOM05D002525 ORTHO05D002727 2.6e-10 68.9 73 42.5
Cfa015788 Carpinus fangiana HOM05D002525 ORTHO05D002727 2.6e-10 68.9 73 47.9
Medtr5g090150 Medicago truncatula HOM05D002525 ORTHO05D002727 2.6e-10 68.9 73 39.7
TAR362G1149 Trochodendron aralioides HOM05D002525 ORTHO05D002727 3.4e-10 68.6 73 43.8
LjContig00049g0021232 Lotus japonicus HOM05D002525 ORTHO05D002727 7.5e-10 67.4 92 37.0
PGSC0003DMG400027004 Solanum tuberosum HOM05D002525 ORTHO05D002727 7.5e-10 67.4 73 43.8
Eucgr.H00428 Eucalyptus grandis HOM05D002525 ORTHO05D002727 1.3e-09 66.6 68 44.1
Oeu050359.1 Olea europaea HOM05D002525 ORTHO05D002727 1.3e-09 66.6 68 42.6
Haze_00705 Corylus avellana HOM05D002525 ORTHO05D002727 2.2e-09 65.9 73 45.2
Glyma.14G033200 Glycine max HOM05D002525 ORTHO05D002727 2.8e-09 65.5 68 39.7
Lalb_Chr17g0348081 Lupinus albus HOM05D002525 ORTHO05D002727 2.8e-09 65.5 74 41.9
Solyc06g073500.3 Solanum lycopersicum HOM05D002525 ORTHO05D002727 2.8e-09 65.5 73 42.5
HanXRQChr14g0454141 Helianthus annuus HOM05D002525 ORTHO05D002727 6.3e-09 64.3 73 41.1
Nitab4.5_0002368g0070 Nicotiana tabacum HOM05D002525 ORTHO05D002727 6.3e-09 64.3 73 39.7
MD04G1036900 Malus domestica HOM05D002525 ORTHO05D002727 8.3e-09 63.9 68 45.6
Lalb_Chr10g0106411 Lupinus albus HOM05D002525 ORTHO05D002727 1.1e-08 63.5 74 40.5
Lsat_1_v5_gn_1_71460 Lactuca sativa HOM05D002525 ORTHO05D002727 3.1e-08 62.0 73 41.1
VMungo0647G1685 Vigna mungo HOM05D002525 ORTHO05D002727 4.1e-08 61.6 71 40.8
Oeu007722.2 Olea europaea HOM05D002525 ORTHO05D002727 5.4e-08 61.2 88 37.5
Nitab4.5_0005682g0010 Nicotiana tabacum HOM05D002525 ORTHO05D002727 7.0e-08 60.8 73 38.4
Sopen06g029860 Solanum pennellii HOM05D002525 ORTHO05D002727 1.2e-07 60.1 73 39.7
Migut.G01023 Erythranthe guttata HOM05D002525 ORTHO05D002727 2.7e-07 58.9 73 37.0
Phvul.008G199500 Phaseolus vulgaris HOM05D002525 ORTHO05D002727 5.9e-07 57.8 71 38.0
CAN.G65.189 Capsicum annuum HOM05D002525 ORTHO05D002727 1.3e-06 56.6 49 49.0


User provided reference genes

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