Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 3.1e-221 771.5 401 100.0
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 4.4e-111 405.6 568 45.6
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 9.9e-111 404.4 566 45.8
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 4.1e-109 399.1 563 46.0
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 7.1e-109 398.3 568 45.8
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 3.0e-107 392.9 563 45.1
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 2.1e-105 386.7 570 44.2
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 4.7e-105 385.6 570 43.7
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 6.2e-105 385.2 566 43.8
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 8.1e-105 384.8 563 43.2
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.1e-104 384.4 568 42.8
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 1.4e-104 384.0 565 43.9
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 2.4e-104 383.3 565 43.4
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 4.0e-104 382.5 566 42.6
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 5.2e-104 382.1 570 43.7
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 6.9e-104 381.7 567 44.1
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 6.9e-104 381.7 564 43.6
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 6.9e-104 381.7 571 42.7
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 8.9e-104 381.3 545 43.5
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 8.9e-104 381.3 545 43.3
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 8.9e-104 381.3 565 43.7
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 8.9e-104 381.3 565 43.7
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 2.0e-103 380.2 568 44.0
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 2.6e-103 379.8 569 43.9
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 7.6e-103 378.3 566 44.3
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 1.3e-102 377.5 565 43.7
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 1.7e-102 377.1 565 43.7
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 2.2e-102 376.7 571 43.6
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 3.8e-102 375.9 570 43.5
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 4.9e-102 375.6 579 42.3
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 1.9e-101 373.6 570 43.7
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 3.2e-101 372.9 564 42.9
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 4.2e-101 372.5 572 41.6
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 1.6e-100 370.5 567 43.7
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 3.5e-100 369.4 570 42.5
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 4.6e-100 369.0 568 42.6
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 1.0e-99 367.9 567 41.4
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 1.3e-99 367.5 566 42.9
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 1.7e-99 367.1 561 42.2
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 1.7e-99 367.1 568 42.3
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 1.7e-99 367.1 568 42.4
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 3.0e-99 366.3 574 42.3
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 3.0e-99 366.3 570 42.5
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 3.9e-99 365.9 570 42.3
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 3.9e-99 365.9 565 41.8
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.5e-98 364.0 565 43.0
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 3.3e-98 362.8 569 42.0
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 3.3e-98 362.8 569 42.0
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 3.3e-98 362.8 568 42.6
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 4.3e-98 362.5 565 42.8
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 4.3e-98 362.5 565 42.8
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 7.3e-98 361.7 571 42.2
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.1e-96 357.8 564 41.0
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.1e-96 357.8 564 42.0
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.8e-96 357.1 571 40.8
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 2.4e-96 356.7 563 42.1
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 4.0e-96 355.9 568 42.1
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 6.9e-96 355.1 573 41.9
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 9.0e-96 354.8 583 42.0
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 9.0e-96 354.8 564 41.7
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 1.2e-95 354.4 565 41.4
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 1.2e-95 354.4 565 41.4
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 1.2e-95 354.4 565 41.4
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 1.2e-95 354.4 565 41.4
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 3.4e-95 352.8 566 41.3
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 3.4e-95 352.8 566 41.3
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 3.4e-95 352.8 565 41.2
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 3.4e-95 352.8 565 41.8
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 3.4e-95 352.8 565 41.1
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 5.8e-95 352.1 568 41.2
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 7.6e-95 351.7 595 39.3
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 9.9e-95 351.3 565 40.5
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 9.9e-95 351.3 565 41.2
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 1.3e-94 350.9 568 41.7
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 1.3e-94 350.9 566 41.0
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 1.3e-94 350.9 558 40.3
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 1.7e-94 350.5 567 40.7
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 2.2e-94 350.1 567 40.9
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 4.9e-94 349.0 564 40.6
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 8.4e-94 348.2 567 40.6
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 1.4e-93 347.4 575 43.7
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 1.4e-93 347.4 561 40.8
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 1.9e-93 347.1 565 41.6
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 2.4e-93 346.7 567 40.4
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 2.4e-93 346.7 565 41.6
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.2e-92 344.4 563 41.7
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 1.6e-92 344.0 569 39.4
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 2.7e-92 343.2 568 39.4
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 3.5e-92 342.8 566 40.1
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 6.0e-92 342.0 573 40.3
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 3.9e-91 339.3 588 38.8
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 3.9e-91 339.3 568 40.7
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.1e-89 333.6 565 41.1
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 3.6e-89 332.8 567 39.2
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 4.8e-89 332.4 566 40.8
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 4.8e-89 332.4 573 39.3
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 2.4e-88 330.1 564 39.7
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 5.3e-88 328.9 569 38.5
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 6.9e-88 328.6 565 39.1
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 6.9e-88 328.6 565 40.7
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 1.2e-87 327.8 570 37.7
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 2.0e-87 327.0 572 39.3
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 9.9e-87 324.7 532 41.7
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 8.4e-86 321.6 521 40.7
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 9.3e-85 318.2 506 41.7
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 2.8e-81 306.6 622 35.7
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 1.8e-80 303.9 366 50.5
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 4.2e-77 292.7 579 36.1
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 3.0e-75 286.6 459 42.0
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 1.6e-73 280.8 481 37.0
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 7.6e-71 271.9 571 31.9
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 6.5e-70 268.9 568 34.2
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 2.5e-69 266.9 564 32.1
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 5.5e-69 265.8 488 34.2
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 5.5e-69 265.8 561 31.7
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.7e-65 253.1 566 33.2
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 4.8e-65 252.7 692 30.8
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 4.5e-63 246.1 383 42.0
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 3.6e-60 236.5 471 36.5
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 1.0e-59 235.0 483 32.3
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 2.6e-55 220.3 475 32.0
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 3.6e-52 209.9 203 59.1
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.2e-47 194.9 244 48.4
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.6e-47 194.5 494 26.9
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.7e-46 191.0 242 48.3
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 2.2e-46 190.7 238 47.5
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 5.0e-46 189.5 251 47.0
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 1.9e-45 187.6 243 47.3
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 9.7e-42 175.3 443 30.2
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 2.4e-40 170.6 201 52.7
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.3e-38 164.9 156 57.1
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 8.5e-38 162.2 282 38.7
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 1.3e-30 138.3 205 42.4
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 5.0e-30 136.3 206 41.7
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 1.4e-27 128.3 527 22.8
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 3.0e-27 127.1 217 38.7
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 1.2e-26 125.2 112 59.8
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 2.0e-26 124.4 323 31.9
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.6e-26 124.0 175 46.3
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 9.8e-26 122.1 203 42.9
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 1.2e-23 115.2 320 31.6
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.0e-23 114.4 169 46.2
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 4.5e-23 113.2 200 33.0
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.5e-21 108.2 102 57.8
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 2.1e-20 104.4 113 53.1
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 2.1e-20 104.4 213 35.2
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.0e-19 100.5 191 35.6
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 8.9e-19 99.0 73 65.8
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 2.0e-18 97.8 158 36.7
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.8e-16 91.3 174 37.4
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 5.9e-15 86.3 63 58.7
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.0e-14 83.2 76 61.8
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 3.4e-10 70.5 149 34.2
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.4e-10 70.5 94 40.4
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 6.4e-09 66.2 154 36.4
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.2e-07 62.0 52 57.7
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 3.5e-07 60.5 154 32.5


User provided reference genes

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