Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 4.3e-187 657.9 349 100.0
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 8.1e-101 371.3 398 58.0
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 1.2e-93 347.4 403 54.3
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 4.7e-93 345.5 401 54.6
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.1e-92 344.4 402 53.0
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.4e-92 344.0 403 53.1
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.8e-92 343.6 413 52.3
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 7.6e-91 338.2 401 52.6
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 9.9e-91 337.8 403 52.1
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 8.4e-90 334.7 407 51.1
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 4.1e-89 332.4 365 55.9
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 6.6e-87 325.1 401 50.9
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 6.6e-87 325.1 408 49.0
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 1.1e-86 324.3 409 49.4
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 2.5e-86 323.2 392 50.3
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 6.2e-85 318.5 404 49.8
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 2.4e-84 316.6 403 48.9
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 6.9e-84 315.1 397 49.9
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 9.0e-84 314.7 402 49.0
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 9.0e-84 314.7 414 48.8
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 2.0e-83 313.5 397 49.9
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 2.6e-83 313.2 399 48.4
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 5.8e-83 312.0 400 48.2
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 5.8e-83 312.0 403 48.6
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.3e-82 310.8 399 47.6
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 3.8e-82 309.3 399 47.1
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 8.4e-82 308.1 405 46.9
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 1.1e-81 307.8 402 47.0
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 2.4e-81 306.6 399 48.9
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 5.4e-81 305.4 392 47.2
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 9.3e-81 304.7 407 45.7
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 9.3e-81 304.7 411 46.5
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 9.3e-81 304.7 411 46.5
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 1.2e-80 304.3 396 48.5
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 1.6e-80 303.9 395 48.1
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 1.6e-80 303.9 406 48.3
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 2.1e-80 303.5 398 48.0
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 2.7e-80 303.1 393 48.9
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 6.0e-80 302.0 405 46.9
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 6.0e-80 302.0 409 48.4
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 6.0e-80 302.0 400 47.5
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 7.8e-80 301.6 399 46.4
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.0e-79 301.2 399 45.9
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.0e-79 301.2 252 61.1
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.0e-79 301.2 252 62.3
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 1.7e-79 300.4 395 46.1
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 3.0e-79 299.7 415 46.7
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 3.9e-79 299.3 400 49.8
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 5.1e-79 298.9 246 63.8
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 5.1e-79 298.9 355 50.1
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 6.6e-79 298.5 400 46.2
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 6.6e-79 298.5 400 46.2
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 8.7e-79 298.1 390 46.7
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.9e-78 297.0 409 47.7
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 4.3e-78 295.8 423 44.9
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 4.3e-78 295.8 397 47.4
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 9.6e-78 294.7 397 46.9
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 9.6e-78 294.7 397 47.1
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 9.6e-78 294.7 402 46.0
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 1.3e-77 294.3 400 45.8
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 1.6e-77 293.9 395 45.6
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 2.1e-77 293.5 255 61.2
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 3.6e-77 292.7 380 48.4
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 4.8e-77 292.4 410 45.9
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 1.1e-76 291.2 412 46.6
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 1.1e-76 291.2 246 63.8
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 3.1e-76 289.7 397 46.9
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 6.9e-76 288.5 404 45.3
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 6.9e-76 288.5 246 61.8
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 9.0e-76 288.1 246 61.4
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 1.2e-75 287.7 246 61.4
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 1.5e-75 287.3 414 45.9
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 2.6e-75 286.6 354 49.7
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 4.5e-75 285.8 246 61.8
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 5.8e-75 285.4 399 46.9
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 7.6e-75 285.0 407 43.0
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 1.3e-74 284.3 246 61.0
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 1.7e-74 283.9 247 61.9
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 2.2e-74 283.5 248 61.7
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.9e-74 283.1 246 58.5
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 2.9e-74 283.1 401 46.4
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 1.1e-73 281.2 246 61.4
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 1.4e-73 280.8 255 58.4
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 9.3e-73 278.1 246 60.2
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 9.3e-73 278.1 243 58.4
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 2.1e-72 276.9 252 58.7
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 1.0e-71 274.6 247 58.7
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 1.0e-71 274.6 405 42.2
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 3.0e-71 273.1 408 44.1
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 3.0e-71 273.1 252 58.3
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 3.9e-71 272.7 401 43.6
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 3.9e-71 272.7 393 42.7
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 3.9e-71 272.7 393 42.7
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 5.1e-71 272.3 393 42.7
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 6.7e-71 271.9 405 42.2
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 8.7e-71 271.6 407 41.5
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 3.3e-70 269.6 405 41.7
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 4.3e-70 269.2 254 57.5
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 4.3e-70 269.2 252 56.3
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 9.6e-70 268.1 247 57.9
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 1.6e-69 267.3 251 55.8
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 1.6e-69 267.3 393 42.2
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 1.6e-69 267.3 393 42.2
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 2.8e-69 266.5 245 55.5
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 3.7e-69 266.2 246 58.1
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 4.8e-69 265.8 391 43.5
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 4.8e-69 265.8 409 41.8
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 4.8e-69 265.8 409 42.1
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 4.8e-69 265.8 229 62.0
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.4e-68 264.2 404 41.6
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 1.4e-68 264.2 246 57.3
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 1.5e-67 260.8 251 55.0
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 5.1e-63 245.7 416 38.9
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 5.6e-62 242.3 243 52.3
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 1.5e-59 234.2 247 51.8
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 5.8e-59 232.3 194 62.4
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 7.6e-59 231.9 200 62.5
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 7.9e-56 221.9 192 60.4
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 2.3e-55 220.3 261 48.3
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 2.5e-54 216.9 246 46.3
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 4.3e-54 216.1 246 48.8
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 1.5e-51 207.6 169 65.7
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 2.0e-51 207.2 246 46.3
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.3e-47 193.7 246 43.1
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 8.7e-47 191.8 162 65.4
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 1.5e-46 191.0 166 60.8
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 7.4e-46 188.7 255 47.8
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 1.3e-45 188.0 404 36.6
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 8.2e-45 185.3 165 60.0
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 3.2e-41 173.3 121 74.4
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 2.1e-40 170.6 165 55.8
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 6.1e-40 169.1 172 51.2
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 6.7e-31 139.0 255 37.6
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 7.7e-27 125.6 270 36.3
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 6.5e-26 122.5 247 32.0
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 3.2e-25 120.2 181 40.9
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 2.8e-21 107.1 227 26.9
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.1e-20 103.6 174 39.1
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 8.5e-18 95.5 100 51.0
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 8.5e-18 95.5 100 51.0
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 4.2e-17 93.2 203 36.5
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 1.5e-14 84.7 79 54.4
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 3.4e-14 83.6 59 71.2
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 4.4e-14 83.2 74 58.1
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 2.8e-13 80.5 55 74.5
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.5e-11 73.6 62 54.8
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 6.5e-10 69.3 239 25.5
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 3.0e-07 60.5 182 33.5


User provided reference genes

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