Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 1.8e-125 452.6 229 100.0
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 5.7e-95 351.3 224 80.8
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.2e-94 349.4 223 79.8
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 6.3e-94 347.8 222 80.2
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 6.9e-93 344.4 223 78.0
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 9.0e-93 344.0 222 78.4
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 1.5e-92 343.2 222 78.4
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 2.6e-92 342.4 210 81.4
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 4.5e-92 341.7 210 81.0
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 5.9e-92 341.3 223 77.6
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 3.2e-90 335.5 181 92.8
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 5.5e-90 334.7 222 76.6
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 5.5e-90 334.7 224 76.3
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 7.2e-90 334.3 211 79.6
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 9.4e-90 334.0 221 75.6
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 1.2e-89 333.6 222 77.5
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 3.6e-89 332.0 223 75.3
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 6.1e-89 331.3 222 77.0
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 6.1e-89 331.3 222 74.8
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 7.9e-89 330.9 222 77.0
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 7.9e-89 330.9 210 77.6
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 2.3e-88 329.3 222 76.1
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 2.3e-88 329.3 211 76.8
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 2.3e-88 329.3 223 75.3
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 5.1e-88 328.2 206 79.6
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 6.7e-88 327.8 222 74.8
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 2.0e-87 326.2 222 73.4
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 2.0e-87 326.2 222 76.6
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 2.5e-87 325.9 222 74.8
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 3.3e-87 325.5 210 77.1
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 5.7e-87 324.7 185 86.5
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 5.7e-87 324.7 223 74.0
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 5.7e-87 324.7 222 74.3
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 7.4e-87 324.3 224 73.7
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 1.7e-86 323.2 220 74.5
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 2.2e-86 322.8 222 74.3
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 2.2e-86 322.8 222 74.3
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.8e-86 322.4 246 69.9
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 2.8e-86 322.4 222 74.3
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 3.7e-86 322.0 222 74.3
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 3.7e-86 322.0 222 73.9
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 6.3e-86 321.2 210 76.2
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 6.3e-86 321.2 210 76.7
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 8.2e-86 320.9 224 73.7
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 8.2e-86 320.9 222 74.3
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 8.2e-86 320.9 222 75.2
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.1e-85 320.5 222 73.9
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.4e-85 320.1 216 76.4
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 1.8e-85 319.7 222 74.8
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 2.4e-85 319.3 222 73.4
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 3.1e-85 318.9 181 86.7
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 5.3e-85 318.2 211 75.4
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.5e-84 316.6 222 73.0
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 2.6e-84 315.8 222 72.5
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 4.5e-84 315.1 222 74.8
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 5.9e-84 314.7 222 73.0
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.0e-83 313.9 223 71.3
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.0e-83 313.9 222 72.5
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 2.2e-83 312.8 222 71.2
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.9e-83 312.4 204 75.5
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 3.8e-83 312.0 204 75.5
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 6.5e-83 311.2 264 65.2
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 1.1e-82 310.5 222 73.0
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 1.4e-82 310.1 215 72.6
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 2.5e-82 309.3 198 76.8
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 1.6e-81 306.6 181 82.9
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 1.6e-81 306.6 210 73.3
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 2.1e-81 306.2 203 76.4
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 1.0e-80 303.9 203 75.4
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 1.4e-80 303.5 259 64.5
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 5.1e-80 301.6 179 82.1
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 6.7e-80 301.2 202 74.3
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 8.8e-80 300.8 213 71.4
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 1.1e-79 300.4 211 70.1
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 1.1e-79 300.4 206 71.4
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 2.0e-79 299.7 202 74.8
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 3.3e-79 298.9 179 81.6
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 5.7e-79 298.1 222 69.4
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 7.4e-79 297.7 173 84.4
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 7.4e-79 297.7 222 69.4
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 7.4e-79 297.7 222 69.8
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 1.3e-78 297.0 201 74.1
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 1.3e-78 297.0 222 69.8
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 2.8e-78 295.8 206 70.9
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 1.8e-77 293.1 201 72.1
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 3.1e-77 292.4 206 69.9
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 3.1e-77 292.4 202 73.8
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 4.1e-77 292.0 202 73.3
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 4.1e-77 292.0 209 69.9
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 4.1e-77 292.0 209 69.9
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 5.3e-77 291.6 209 69.4
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 7.0e-77 291.2 206 69.9
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 1.2e-76 290.4 209 69.4
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 2.0e-76 289.7 206 68.4
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 2.6e-76 289.3 209 69.4
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 2.6e-76 289.3 213 69.0
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 4.5e-76 288.5 195 82.1
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 5.9e-76 288.1 210 71.4
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 2.2e-75 286.2 209 68.4
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 2.2e-75 286.2 179 78.2
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 2.2e-75 286.2 209 68.4
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 5.0e-75 285.0 209 68.4
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 5.0e-75 285.0 213 66.2
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 6.5e-75 284.6 203 69.0
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 2.5e-74 282.7 203 68.5
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 1.5e-71 273.5 213 63.8
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 3.3e-71 272.3 212 62.7
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.6e-68 263.5 223 64.1
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 3.5e-68 262.3 144 90.3
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 5.2e-64 248.4 144 82.6
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 1.1e-61 240.7 243 56.8
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 4.1e-61 238.8 222 60.8
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 7.0e-61 238.0 201 59.2
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 7.7e-60 234.6 157 72.6
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 1.3e-59 233.8 144 78.5
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 2.2e-59 233.0 144 78.5
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 2.0e-55 219.9 142 77.5
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 6.3e-54 214.9 178 65.7
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 3.0e-48 196.1 107 94.4
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 2.8e-46 189.5 237 44.3
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 1.1e-45 187.6 144 68.8
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 7.3e-42 174.9 100 84.0
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.0e-40 171.0 182 50.5
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 4.1e-37 159.1 184 53.8
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 2.6e-31 139.8 85 81.2
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 2.6e-31 139.8 87 77.0
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 1.6e-28 130.6 230 37.0
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 5.6e-26 122.1 80 73.8
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 2.7e-20 103.2 57 91.2
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 7.8e-20 101.7 70 70.0
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 2.8e-17 93.2 53 88.7
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.3e-14 84.3 79 59.5
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 3.0e-11 73.2 46 76.1
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 8.7e-11 71.6 81 46.9
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 1.3e-09 67.8 39 84.6


User provided reference genes

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