Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 0.0e+00 1077.0 548 100.0
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 8.2e-310 1066.2 548 98.9
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 3.3e-274 948.0 531 91.9
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 6.3e-225 784.3 547 73.3
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 6.3e-225 784.3 547 73.3
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 1.1e-221 773.5 547 71.7
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 4.6e-220 768.1 547 70.9
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 1.4e-219 766.5 547 71.3
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 6.7e-219 764.2 548 71.0
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 5.5e-213 744.6 546 69.4
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 2.7e-212 742.3 546 70.7
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.8e-211 739.6 547 69.3
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 8.8e-211 737.3 547 68.9
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 7.4e-210 734.2 547 69.3
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.2e-209 732.6 546 69.4
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.8e-209 731.5 547 68.6
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 5.3e-208 728.0 548 67.5
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.1e-205 720.3 546 68.3
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 6.1e-204 714.5 546 68.1
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.8e-203 713.0 546 67.9
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 1.3e-201 706.8 546 68.3
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.7e-201 706.4 546 67.2
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 3.1e-200 702.2 543 66.9
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 2.0e-199 699.5 546 66.3
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 2.0e-199 699.5 549 67.2
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 5.9e-199 698.0 547 64.4
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 5.9e-199 698.0 546 66.8
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 1.0e-198 697.2 549 66.1
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 2.9e-198 695.7 544 65.4
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 2.9e-198 695.7 539 66.4
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 3.8e-198 695.3 546 66.8
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.8e-198 695.3 546 66.8
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 1.9e-197 693.0 548 65.1
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 2.5e-197 692.6 547 65.8
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 4.2e-197 691.8 547 65.3
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 9.4e-197 690.6 550 64.0
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 1.4e-195 686.8 591 62.9
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.8e-195 686.4 547 65.4
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 2.3e-195 686.0 590 62.9
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 8.8e-195 684.1 552 64.7
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 2.0e-194 682.9 547 65.1
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 3.4e-194 682.2 548 63.5
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 7.5e-194 681.0 548 64.6
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.7e-193 679.9 547 64.9
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 6.3e-193 677.9 549 65.6
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 6.3e-193 677.9 526 67.1
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.1e-192 677.2 548 63.5
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.8e-192 676.4 546 63.7
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 2.4e-192 676.0 548 64.8
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 1.2e-191 673.7 546 63.7
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 1.2e-191 673.7 546 63.7
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 2.7e-191 672.5 547 62.9
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 3.5e-191 672.2 548 63.0
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 1.0e-190 670.6 548 62.6
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.3e-190 670.2 549 62.8
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 2.2e-190 669.5 526 64.8
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 6.5e-190 667.9 548 61.7
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 1.5e-189 666.8 524 65.6
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 5.5e-189 664.8 550 63.1
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.2e-188 663.7 551 62.6
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 1.0e-187 660.6 548 64.1
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 1.8e-187 659.8 546 62.6
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 2.4e-184 649.4 551 62.1
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 4.5e-183 645.2 542 63.5
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 5.9e-183 644.8 553 61.7
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 7.7e-183 644.4 514 65.2
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 3.8e-182 642.1 553 60.9
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.2e-181 637.9 526 64.6
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 9.5e-181 637.5 550 59.8
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.6e-180 636.7 591 60.2
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 2.8e-180 636.0 550 58.7
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.6e-180 635.6 591 60.1
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 4.7e-180 635.2 550 58.9
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 1.0e-179 634.0 550 60.2
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.8e-179 633.3 591 59.9
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 4.0e-179 632.1 546 60.1
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 6.8e-179 631.3 552 60.0
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 2.6e-178 629.4 551 59.0
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.6e-178 629.4 591 59.7
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 5.7e-178 628.2 551 58.8
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 1.1e-176 624.0 550 58.5
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 4.1e-176 622.1 414 74.9
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 1.2e-175 620.5 550 58.2
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 2.7e-175 619.4 544 59.7
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 2.7e-175 619.4 547 58.9
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 3.5e-175 619.0 550 58.2
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.3e-174 617.1 527 63.0
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 3.9e-174 615.5 556 57.9
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 8.6e-174 614.4 523 61.2
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 5.6e-173 611.7 550 58.2
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.6e-172 610.1 548 58.9
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 3.6e-172 609.0 547 58.1
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 3.1e-171 605.9 549 57.9
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.3e-169 600.5 551 56.8
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 2.2e-169 599.7 516 58.3
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 1.0e-166 590.9 549 56.8
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 2.3e-163 579.7 551 55.9
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 5.2e-163 578.6 577 55.3
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.1e-155 554.3 558 52.9
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.8e-155 553.5 558 53.4
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 5.2e-147 525.4 429 63.9
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 7.3e-141 505.0 420 61.7
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 5.4e-136 488.8 419 60.6
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 4.2e-128 462.6 500 50.2
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 5.5e-128 462.2 498 50.4
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 7.4e-125 451.8 549 48.8
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 6.2e-124 448.7 574 43.0
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 6.7e-118 428.7 364 61.3
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 6.9e-115 418.7 468 48.7
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 1.2e-114 417.9 497 48.9
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 2.2e-113 413.7 328 66.5
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 5.1e-110 402.5 425 53.2
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 3.8e-105 386.3 360 57.2
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 3.9e-102 376.3 507 42.2
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 7.4e-101 372.1 309 64.1
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 3.8e-97 359.8 517 42.6
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 3.7e-92 343.2 264 63.6
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.4e-91 341.3 424 46.5
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.4e-91 340.5 552 38.0
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 1.5e-85 321.2 508 40.7
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 7.5e-85 318.9 508 40.4
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 7.5e-85 318.9 489 38.4
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 4.7e-79 299.7 354 50.3
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 5.9e-66 256.1 266 53.4
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.7e-60 236.9 231 56.7
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.2e-58 231.9 188 62.2
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.5e-58 230.3 209 59.3
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 4.6e-42 176.8 117 79.5
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 1.4e-35 155.2 172 53.5
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 4.1e-35 153.7 589 25.1
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 9.2e-35 152.5 207 47.3
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 6.0e-34 149.8 128 61.7
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 1.4e-30 138.7 119 62.2
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-30 138.7 111 67.6
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 5.8e-29 133.3 454 30.6
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 8.4e-28 129.4 583 27.4
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 4.2e-27 127.1 113 59.3
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.6e-26 125.2 88 67.0
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.5e-26 124.0 110 61.8
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 1.3e-25 122.1 103 65.0
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 2.3e-25 121.3 90 67.8
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 4.8e-23 113.6 87 70.1
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 3.1e-22 110.9 505 24.6
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 4.3e-16 90.5 290 29.0
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 4.0e-14 84.0 95 42.1
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 1.8e-09 68.6 479 23.0
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 2.5e-08 64.7 130 37.7
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.3e-08 63.9 61 52.5
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 5.6e-08 63.5 86 45.3


User provided reference genes

Program Settings