Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 8.1e-255 883.2 448 100.0
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 9.4e-102 374.8 482 46.9
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 9.4e-94 348.2 451 45.0
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.1e-83 314.7 449 43.0
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 9.1e-81 305.1 449 41.4
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 1.3e-79 301.2 302 54.0
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 2.5e-78 297.0 448 40.8
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 1.2e-77 294.7 402 43.3
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 2.3e-76 290.4 361 47.4
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 4.8e-74 282.7 473 37.4
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 7.0e-73 278.9 448 38.8
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 4.5e-72 276.2 404 42.1
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 5.0e-71 272.7 402 40.3
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 1.5e-70 271.2 314 46.8
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 1.9e-70 270.8 444 38.1
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 4.7e-69 266.2 312 46.5
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 5.2e-68 262.7 303 47.9
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 2.6e-67 260.4 378 40.2
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 4.4e-67 259.6 326 43.9
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 4.4e-67 259.6 498 36.7
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 5.7e-67 259.2 342 43.6
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 1.3e-66 258.1 336 43.2
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.7e-66 256.5 277 49.1
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 6.3e-66 255.8 403 39.7
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 6.3e-66 255.8 344 44.2
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 8.3e-66 255.4 384 40.6
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 1.4e-65 254.6 336 42.9
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 1.4e-65 254.6 437 38.2
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 3.1e-65 253.4 415 38.8
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 3.1e-65 253.4 416 38.9
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.2e-64 251.5 452 39.6
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 2.0e-64 250.8 324 46.3
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 2.7e-64 250.4 385 40.8
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 1.0e-63 248.4 282 45.4
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 1.3e-63 248.1 271 49.1
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 2.3e-63 247.3 448 37.5
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 2.9e-63 246.9 282 46.5
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 3.8e-63 246.5 356 40.4
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.6e-63 245.7 270 47.8
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 8.6e-63 245.4 327 41.6
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-62 245.0 267 49.8
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 1.5e-62 244.6 335 42.1
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.3e-62 243.4 283 47.7
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 3.3e-62 243.4 322 42.2
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 4.2e-62 243.0 367 39.5
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 7.2e-62 242.3 312 42.0
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 7.2e-62 242.3 457 34.1
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 9.5e-62 241.9 274 46.4
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 1.6e-61 241.1 271 45.0
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 3.6e-61 240.0 440 35.7
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 8.0e-61 238.8 303 45.5
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.4e-60 238.0 284 46.1
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 1.4e-60 238.0 459 36.4
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 5.2e-60 236.1 325 40.9
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 2.6e-59 233.8 293 44.7
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.6e-59 233.8 279 46.2
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 2.6e-59 233.8 228 52.6
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 1.1e-57 228.4 265 44.2
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.4e-57 228.0 295 41.4
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 1.8e-57 227.6 267 43.8
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 3.2e-57 226.9 398 38.7
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 4.1e-57 226.5 371 37.7
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 5.4e-57 226.1 264 45.8
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 5.4e-57 226.1 450 35.1
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 5.4e-57 226.1 367 39.8
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 9.2e-57 225.3 357 40.1
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 4.5e-56 223.0 272 43.4
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 5.9e-56 222.6 350 37.7
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 1.7e-55 221.1 332 40.1
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 5.0e-55 219.5 467 35.3
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 8.6e-55 218.8 276 43.5
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 2.5e-54 217.2 329 40.1
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 4.3e-54 216.5 333 39.9
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 5.6e-54 216.1 267 46.1
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 9.5e-54 215.3 450 34.2
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.2e-53 214.9 225 51.6
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 3.6e-53 213.4 303 41.6
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.7e-53 213.0 225 51.1
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 6.1e-53 212.6 350 39.1
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.8e-52 211.1 273 44.3
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 3.1e-52 210.3 389 37.5
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 5.2e-52 209.5 273 44.3
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 6.8e-52 209.1 369 36.3
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.0e-51 207.6 254 45.7
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 5.8e-51 206.1 448 32.6
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 5.8e-51 206.1 303 40.3
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 9.8e-51 205.3 322 41.0
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.9e-49 201.1 333 35.1
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 1.2e-48 198.4 262 38.9
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.2e-48 198.4 264 37.1
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 1.6e-48 198.0 310 36.1
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.0e-48 197.6 455 33.4
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 6.0e-48 196.1 355 36.3
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.0e-47 195.3 339 38.6
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.3e-47 194.9 266 41.0
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.3e-47 194.9 220 48.6
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.7e-47 194.5 457 33.3
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 3.0e-47 193.7 313 36.7
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 3.9e-47 193.4 284 37.3
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 6.6e-47 192.6 297 37.4
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 8.6e-47 192.2 278 39.6
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 1.1e-46 191.8 286 37.4
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.5e-46 191.4 329 34.3
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 2.5e-46 190.7 393 31.3
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.3e-46 190.3 226 48.2
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 7.3e-46 189.1 312 36.9
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 9.5e-46 188.7 419 34.8
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 1.2e-45 188.3 272 39.3
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 4.7e-45 186.4 213 46.5
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 4.7e-45 186.4 264 39.0
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.8e-44 184.5 302 38.4
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 5.2e-44 183.0 226 46.5
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 2.6e-43 180.6 229 44.1
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 1.7e-42 177.9 229 45.4
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.1e-41 175.3 172 51.2
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.6e-40 171.4 478 29.5
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.3e-38 163.7 178 48.9
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 6.2e-37 159.5 189 48.1
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 6.2e-37 159.5 189 48.1
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 4.1e-33 146.7 349 30.9
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 7.1e-33 146.0 305 31.5
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 2.7e-32 144.1 225 38.7
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 1.0e-31 142.1 188 41.0
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 2.8e-29 134.0 264 32.6
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 2.6e-27 127.5 152 41.4
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 1.7e-26 124.8 284 33.1
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 9.3e-25 119.0 175 38.9
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 9.6e-22 109.0 161 42.9
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 5.3e-20 103.2 222 32.0
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 1.5e-19 101.7 177 35.6
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 4.4e-19 100.1 124 39.5
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 8.4e-18 95.9 129 41.1
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 5.4e-09 66.6 74 48.6
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 2.3e-07 61.2 68 42.6


User provided reference genes

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