Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A519G4 Lonicera japonica HOM05D000176 ORTHO05D000106 3.2e-71 271.6 128 100.0
Lj5A265T32 Lonicera japonica HOM05D000176 ORTHO05D000106 1.3e-32 143.3 162 52.5
Lj4A278T50 Lonicera japonica HOM05D000176 ORTHO05D000106 1.7e-32 142.9 162 52.5
Lj4P278T38 Lonicera japonica HOM05D000176 ORTHO05D000106 4.7e-30 134.8 76 82.9
Lj5C312G4 Lonicera japonica HOM05D000176 ORTHO05D000106 1.0e-29 133.7 133 52.6
Lj4C456T1 Lonicera japonica HOM05D000176 ORTHO05D000106 6.7e-29 131.0 76 81.6
Lj5A149T46 Lonicera japonica HOM05D000176 ORTHO05D000106 8.8e-29 130.6 100 61.0
Lj8C418G4 Lonicera japonica HOM05D000176 ORTHO05D000106 1.5e-28 129.8 142 47.9
Lj7C461T7 Lonicera japonica HOM05D000176 ORTHO05D000106 2.6e-28 129.0 139 48.2
Lj2C1107G22 Lonicera japonica HOM05D000176 ORTHO05D000106 9.7e-28 127.1 90 63.3
Lj5C702T0 Lonicera japonica HOM05D000176 ORTHO05D000106 9.7e-28 127.1 77 71.4
Lju1295A4T34 Lonicera japonica HOM05D000176 ORTHO05D000106 9.7e-28 127.1 77 71.4
Lj7A410T9 Lonicera japonica HOM05D000176 ORTHO05D000106 2.2e-27 125.9 77 74.0
Lj7C702T2 Lonicera japonica HOM05D000176 ORTHO05D000106 2.2e-27 125.9 90 63.3
Lj1A171T30 Lonicera japonica HOM05D000176 ORTHO05D000106 8.2e-27 124.0 159 44.7
Lj2P1002T15 Lonicera japonica HOM05D000176 ORTHO05D000106 8.2e-27 124.0 96 59.4
Lj7A349G73 Lonicera japonica HOM05D000176 ORTHO05D000106 7.0e-26 120.9 101 54.5
Lj9A506T41 Lonicera japonica HOM05D000176 ORTHO05D000106 9.1e-26 120.6 95 55.8
Lj2A845T15 Lonicera japonica HOM05D000176 ORTHO05D000106 1.2e-25 120.2 76 65.8
Lj1A172T27 Lonicera japonica HOM05D000176 ORTHO05D000106 1.5e-25 119.8 159 43.4
Lj7C245G13 Lonicera japonica HOM05D000176 ORTHO05D000106 2.0e-25 119.4 76 64.5
Lj9A412T42 Lonicera japonica HOM05D000176 ORTHO05D000106 2.0e-25 119.4 76 64.5
Lj3A75T5 Lonicera japonica HOM05D000176 ORTHO05D000106 2.6e-25 119.0 76 65.8
Lj8C128T7 Lonicera japonica HOM05D000176 ORTHO05D000106 4.5e-25 118.2 139 44.6
Lj1P174T10 Lonicera japonica HOM05D000176 ORTHO05D000106 5.9e-25 117.9 76 65.8
Lj2C1012T4 Lonicera japonica HOM05D000176 ORTHO05D000106 5.9e-25 117.9 76 63.2
Lj1A1194T87 Lonicera japonica HOM05D000176 ORTHO05D000106 1.0e-24 117.1 76 63.2
Lj2A512T36 Lonicera japonica HOM05D000176 ORTHO05D000106 1.3e-24 116.7 163 39.3
Lju1034C2T5 Lonicera japonica HOM05D000176 ORTHO05D000106 1.7e-24 116.3 76 63.2
Lj4C678T2 Lonicera japonica HOM05D000176 ORTHO05D000106 2.9e-24 115.5 76 63.2
Lj5A683T12 Lonicera japonica HOM05D000176 ORTHO05D000106 8.5e-24 114.0 131 43.5
Lj9C281T4 Lonicera japonica HOM05D000176 ORTHO05D000106 2.5e-23 112.5 76 60.5
Lju279A7T18 Lonicera japonica HOM05D000176 ORTHO05D000106 3.2e-23 112.1 163 38.0
Lj1A54G39 Lonicera japonica HOM05D000176 ORTHO05D000106 1.2e-22 110.2 76 59.2
Lj1C600T2 Lonicera japonica HOM05D000176 ORTHO05D000106 1.2e-22 110.2 76 60.5
Lj3A160G33 Lonicera japonica HOM05D000176 ORTHO05D000106 1.6e-22 109.8 77 58.4
Lj1C595G6 Lonicera japonica HOM05D000176 ORTHO05D000106 2.1e-22 109.4 159 38.4
Lju1668C0T1 Lonicera japonica HOM05D000176 ORTHO05D000106 2.7e-22 109.0 80 56.2
Lj5C240T12 Lonicera japonica HOM05D000176 ORTHO05D000106 4.7e-22 108.2 108 47.2
Lj2C799T2 Lonicera japonica HOM05D000176 ORTHO05D000106 6.1e-22 107.8 77 59.7
Lj6C734T17 Lonicera japonica HOM05D000176 ORTHO05D000106 1.8e-21 106.3 144 41.0
Lj1P1231T36 Lonicera japonica HOM05D000176 ORTHO05D000106 3.0e-21 105.5 77 55.8
Lj9A187T10 Lonicera japonica HOM05D000176 ORTHO05D000106 3.0e-21 105.5 77 62.3
Lj7C228G3 Lonicera japonica HOM05D000176 ORTHO05D000106 4.0e-21 105.1 77 58.4
Lj1C9G10 Lonicera japonica HOM05D000176 ORTHO05D000106 5.2e-21 104.8 76 57.9
Lj6A472T10 Lonicera japonica HOM05D000176 ORTHO05D000106 6.7e-21 104.4 77 58.4
Lj2A197T66 Lonicera japonica HOM05D000176 ORTHO05D000106 8.8e-21 104.0 64 70.3
Lj9P643T18 Lonicera japonica HOM05D000176 ORTHO05D000106 8.8e-21 104.0 64 70.3
Lj9P614T42 Lonicera japonica HOM05D000176 ORTHO05D000106 1.1e-20 103.6 77 61.0
Lju124C17G5 Lonicera japonica HOM05D000176 ORTHO05D000106 1.1e-20 103.6 76 57.9
Lj1A491T22 Lonicera japonica HOM05D000176 ORTHO05D000106 2.6e-20 102.4 64 68.8
Lju1163C0T10 Lonicera japonica HOM05D000176 ORTHO05D000106 7.4e-20 100.9 63 66.7
Lj2C845T4 Lonicera japonica HOM05D000176 ORTHO05D000106 1.7e-19 99.8 64 65.6
Lj2P387T42 Lonicera japonica HOM05D000176 ORTHO05D000106 2.2e-19 99.4 63 66.7
Lj9C449G12 Lonicera japonica HOM05D000176 ORTHO05D000106 2.8e-19 99.0 77 57.1
Lj7C277T0 Lonicera japonica HOM05D000176 ORTHO05D000106 3.7e-19 98.6 69 62.3
Lj8C214G5 Lonicera japonica HOM05D001508 ORTHO05D001381 4.8e-19 98.2 127 40.2
Lj2A419T34 Lonicera japonica HOM05D000176 ORTHO05D000106 2.4e-18 95.9 62 69.4
Lju41C56T10 Lonicera japonica HOM05D000176 ORTHO05D000106 3.1e-18 95.5 63 60.3
Lj2A942G28 Lonicera japonica HOM05D000176 ORTHO05D000106 7.0e-18 94.4 81 50.6
Lj5A195T79 Lonicera japonica HOM05D000176 ORTHO05D000106 7.0e-18 94.4 76 60.5
Lj6C620T3 Lonicera japonica HOM05D000176 ORTHO05D000106 1.6e-17 93.2 64 60.9
Lj6P257T7 Lonicera japonica HOM05D000176 ORTHO05D000106 1.6e-17 93.2 64 64.1
Lj8C33G11 Lonicera japonica HOM05D000176 ORTHO05D000106 2.0e-17 92.8 56 69.6
Lj9P676T51 Lonicera japonica HOM05D000176 ORTHO05D000106 2.0e-17 92.8 148 37.2
Lj4A312T8 Lonicera japonica HOM05D000176 ORTHO05D000106 2.2e-16 89.4 54 72.2
Lj2C20T16 Lonicera japonica HOM05D000176 ORTHO05D000106 6.5e-16 87.8 77 54.5
Lj5C659T2 Lonicera japonica HOM05D000176 ORTHO05D000106 6.5e-16 87.8 58 63.8
Lj7C742T3 Lonicera japonica HOM05D000176 ORTHO05D000106 5.5e-15 84.7 74 47.3
Lj6C556T1 Lonicera japonica HOM05D000176 ORTHO05D000106 7.2e-15 84.3 72 54.2
Lj2C1004G7 Lonicera japonica HOM05D000176 ORTHO05D000106 4.7e-14 81.6 76 47.4
Lj2P503T10 Lonicera japonica HOM05D000176 ORTHO05D000106 4.7e-14 81.6 66 51.5
Lj4C692T4 Lonicera japonica HOM05D000176 ORTHO05D000106 4.7e-14 81.6 76 47.4
Lj8C619G11 Lonicera japonica HOM05D000176 ORTHO05D000106 4.7e-14 81.6 76 47.4
Lj1C99T4 Lonicera japonica HOM05D000176 ORTHO05D000106 6.1e-14 81.3 76 46.1
Lj2C590G2 Lonicera japonica HOM05D000176 ORTHO05D000106 6.1e-14 81.3 76 46.1
Lj9C3T3 Lonicera japonica HOM05D000176 ORTHO05D000106 8.0e-14 80.9 76 46.1
Lj1C479G4 Lonicera japonica HOM05D000176 ORTHO05D000106 1.4e-13 80.1 76 46.1
Lju470C8G1 Lonicera japonica HOM05D000176 ORTHO05D000106 2.3e-13 79.3 81 42.0
Lj5C479G2 Lonicera japonica HOM05D000176 ORTHO05D000106 3.0e-13 79.0 76 44.7
Lj1A609T10 Lonicera japonica HOM05D000176 ORTHO05D000106 5.2e-13 78.2 76 46.1
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 6.8e-13 77.8 76 44.7
Lju158C6T6 Lonicera japonica HOM05D000176 ORTHO05D000106 1.5e-12 76.6 105 45.7
Lj8C735T3 Lonicera japonica HOM05D000176 ORTHO05D000106 3.4e-12 75.5 75 44.0
Lj9C207T4 Lonicera japonica HOM05D000176 ORTHO05D000106 4.4e-12 75.1 77 44.2
Lj1C592T6 Lonicera japonica HOM05D000176 ORTHO05D000106 5.7e-12 74.7 92 42.4
Lj8P625T8 Lonicera japonica HOM05D000176 ORTHO05D000106 7.5e-12 74.3 43 81.4
PSO675G7692 Papaver somniferum HOM05D000176 ORTHO05D000106 1.3e-11 73.6 114 34.2
Lj4P413T11 Lonicera japonica HOM05D000176 ORTHO05D000106 2.2e-11 72.8 74 41.9
PSO017G5879 Papaver somniferum HOM05D000176 ORTHO05D000106 2.8e-11 72.4 114 34.2
Lj4P388T15 Lonicera japonica HOM05D000176 ORTHO05D000106 3.7e-11 72.0 49 61.2
Lju2000C0T5 Lonicera japonica HOM05D000176 ORTHO05D000106 1.8e-10 69.7 44 75.0
Migut.C00132 Erythranthe guttata HOM05D000176 ORTHO05D000106 7.0e-10 67.8 95 35.8
Lju41C46T7 Lonicera japonica HOM05D000176 ORTHO05D000106 2.7e-09 65.9 44 70.5
FvH4_6g36961 Fragaria vesca HOM05D000176 ORTHO05D000106 7.7e-09 64.3 75 36.0
Lj4P206T17 Lonicera japonica HOM05D000176 ORTHO05D000106 1.3e-08 63.5 37 78.4
Lj4P909T53 Lonicera japonica HOM05D000176 ORTHO05D000106 1.7e-08 63.2 68 39.7
RcHm_v2.0_Chr5g0043391 Rosa chinensis HOM05D000176 ORTHO05D000106 1.7e-08 63.2 75 36.0
ClCG09G020530 Citrullus lanatus HOM05D000176 ORTHO05D000106 2.9e-08 62.4 79 38.0
Lj8A506T8 Lonicera japonica HOM05D000176 ORTHO05D000106 2.9e-08 62.4 32 84.4
Lju188C6G6 Lonicera japonica HOM05D000176 ORTHO05D000106 2.9e-08 62.4 32 84.4
CSS0039650 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.8e-08 62.0 76 35.5
Lj2C486T4 Lonicera japonica HOM05D000176 ORTHO05D000106 3.8e-08 62.0 33 81.8
Sp1g16000 Schrenkiella parvula HOM05D000176 ORTHO05D000106 3.8e-08 62.0 75 38.7
AL3G42490 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 5.0e-08 61.6 75 33.3
Lj3C54G11 Lonicera japonica HOM05D000176 ORTHO05D000106 5.0e-08 61.6 31 87.1
CARHR018550 Cardamine hirsuta HOM05D000176 ORTHO05D000106 6.5e-08 61.2 75 38.7
Hma1.2p1_0690F.1_g203890 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 6.5e-08 61.2 75 34.7
PSO675G7301 Papaver somniferum HOM05D000176 ORTHO05D000106 6.5e-08 61.2 75 30.7
MELO3C002881.2 Cucumis melo HOM05D000176 ORTHO05D000106 8.5e-08 60.8 79 36.7
CsaV3_5G025870 Cucumis sativus L. HOM05D000176 ORTHO05D000106 8.5e-08 60.8 79 36.7
Lj2C708T1 Lonicera japonica HOM05D000176 ORTHO05D000106 8.5e-08 60.8 76 39.5
Sed0026480 Sechium edule HOM05D000176 ORTHO05D000106 8.5e-08 60.8 79 36.7
AL1G30280 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 1.1e-07 60.5 75 37.3
AT1G17930 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 1.1e-07 60.5 75 37.3
Hma1.2p1_0293F.1_g116320 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 1.1e-07 60.5 75 34.7
Lj2C466G13 Lonicera japonica HOM05D000176 ORTHO05D000106 1.1e-07 60.5 34 76.5
Prupe.4G252400 Prunus persica HOM05D000176 ORTHO05D000106 1.1e-07 60.5 110 30.0
Aa31LG11G4340 Aethionema arabicum HOM05D000176 ORTHO05D000106 1.5e-07 60.1 75 37.3
Hma1.2p1_0111F.1_g053640 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 1.5e-07 60.1 76 35.5
Lju170C10G7 Lonicera japonica HOM05D000176 ORTHO05D000106 1.5e-07 60.1 63 41.3
Atru.chr12.1157 Acer truncatum HOM05D000176 ORTHO05D000106 1.9e-07 59.7 76 31.6
CSS0006036 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.9e-07 59.7 73 34.2
CSS0030233 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.9e-07 59.7 73 34.2
FvH4_3g28611 Fragaria vesca HOM05D000176 ORTHO05D000106 1.9e-07 59.7 110 29.1
CSS0007867 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.5e-07 59.3 73 34.2
RcHm_v2.0_Chr5g0052481 Rosa chinensis HOM05D000176 ORTHO05D000106 2.5e-07 59.3 110 28.2
CSS0006340 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.2e-07 58.9 73 34.2
CSS0007859 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.2e-07 58.9 73 34.2
CSS0010546 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.2e-07 58.9 73 34.2
CSS0011501 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.2e-07 58.9 73 34.2
CSS0026252 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.2e-07 58.9 73 34.2
CSS0035420 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.2e-07 58.9 73 34.2
CSS0036437 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.2e-07 58.9 73 34.2
CSS0038560 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.2e-07 58.9 73 34.2
CSS0049971 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.2e-07 58.9 73 34.2
Hma1.2p1_1995F.1_g310310 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 3.2e-07 58.9 75 34.7
THA.LOC104799018 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 3.2e-07 58.9 75 37.3
Lj4A157T27 Lonicera japonica HOM05D000176 ORTHO05D000106 4.2e-07 58.5 76 39.5
Lj7C321G1 Lonicera japonica HOM05D000176 ORTHO05D000106 4.2e-07 58.5 45 53.3
CSS0048918 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 5.5e-07 58.2 73 34.2
CARHR102890 Cardamine hirsuta HOM05D000176 ORTHO05D000106 5.5e-07 58.2 75 33.3
Prupe.3G047800 Prunus persica HOM05D000176 ORTHO05D000106 5.5e-07 58.2 75 32.0
Sabra02G0169600 Salix brachista HOM05D000176 ORTHO05D000106 5.5e-07 58.2 90 31.1
arahy.Tifrunner.gnm1.ann1.6TXF5J Arachis hypogaea HOM05D000176 ORTHO05D000106 7.2e-07 57.8 75 32.0
BcaB07g34015 Brassica carinata HOM05D000176 ORTHO05D000106 7.2e-07 57.8 75 36.0
C05p16290 Brassica napus HOM05D000176 ORTHO05D000106 7.2e-07 57.8 75 36.0
BolC5t30331H Brassica oleracea HOM05D000176 ORTHO05D000106 7.2e-07 57.8 75 36.0
Thhalv10007522m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 7.2e-07 57.8 78 37.2
MD09G1191600 Malus domestica HOM05D000176 ORTHO05D000106 7.2e-07 57.8 110 27.3
CSS0024646 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 9.4e-07 57.4 73 32.9
RhsimUnG0135500 Rhododendron simsii HOM05D010733 ORTHO05D000106 9.4e-07 57.4 75 33.3
RcHm_v2.0_Chr1g0332031 Rosa chinensis HOM05D000176 ORTHO05D000106 9.4e-07 57.4 75 34.7
RcHm_v2.0_Chr2g0143601 Rosa chinensis HOM05D000176 ORTHO05D000106 9.4e-07 57.4 113 27.4
GSVIVG01017117001 Vitis vinifera HOM05D000176 ORTHO05D003511 9.4e-07 57.4 75 32.0
Aqoxy2G02523 Aquilegia oxysepala HOM05D000176 ORTHO05D000106 1.2e-06 57.0 103 26.2
CSS0009485 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.2e-06 57.0 73 32.9
vmacro22300 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 1.2e-06 57.0 90 33.3
arahy.Tifrunner.gnm1.ann1.PINR01 Arachis hypogaea HOM05D000176 ORTHO05D000106 1.6e-06 56.6 75 32.0
A06p13970 Brassica napus HOM05D000176 ORTHO05D000106 1.6e-06 56.6 75 34.7
BraA06t24537Z Brassica rapa HOM05D000176 ORTHO05D000106 1.6e-06 56.6 75 34.7
TWI36G1460 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 1.6e-06 56.6 75 32.0
Aa31sc575G20 Aethionema arabicum HOM05D000176 ORTHO05D000106 2.1e-06 56.2 75 33.3
Ah.02g116630 Amaranthus hybridus HOM05D000176 ORTHO05D000106 2.1e-06 56.2 76 30.3
CSS0002500 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.1e-06 56.2 75 30.7
CSS0004167 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.1e-06 56.2 73 32.9
CSS0014815 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.1e-06 56.2 75 30.7
CSS0024487 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.1e-06 56.2 73 32.9
Ca_23329_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 2.1e-06 56.2 75 32.0
Cc03_g14530 Coffea canephora HOM05D000176 ORTHO05D000106 2.1e-06 56.2 75 30.7
Atru.chr6.3553_Atru.chr6.3554 Acer truncatum HOM05D000176 ORTHO05D000106 2.7e-06 55.8 75 33.3
CSS0018283 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.7e-06 55.8 73 32.9
QL05p010466 Quercus lobata HOM05D000176 ORTHO05D000106 2.7e-06 55.8 75 34.7
CSS0042022 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.6e-06 55.5 111 27.9
RcHm_v2.0_Chr2g0150841 Rosa chinensis HOM05D000176 ORTHO05D000106 3.6e-06 55.5 75 34.7
THA.LOC104808853 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 3.6e-06 55.5 75 33.3
VMungo0647G2344 Vigna mungo HOM05D000176 ORTHO05D000106 3.6e-06 55.5 75 30.7
CANSAT56G1843 Cannabis sativa HOM05D000176 ORTHO05D000106 4.7e-06 55.1 102 28.4
FvH4_6g37771 Fragaria vesca HOM05D000176 ORTHO05D000106 4.7e-06 55.1 75 33.3
Lalb_Chr20g0114151 Lupinus albus HOM05D000176 ORTHO05D000106 4.7e-06 55.1 78 34.6
RhsimUnG0097200 Rhododendron simsii HOM05D010733 ORTHO05D000106 4.7e-06 55.1 77 35.1
Hund07743 Selenicereus undatus HOM05D000176 ORTHO05D000106 4.7e-06 55.1 75 30.7
ClCG11G000230 Citrullus lanatus HOM05D000176 ORTHO05D000106 6.1e-06 54.7 76 34.2
HanXRQChr09g0246821 Helianthus annuus HOM05D000176 ORTHO05D000106 6.1e-06 54.7 75 32.0
Ca_20886_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 8.0e-06 54.3 75 30.7
TWI73G0304 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 8.0e-06 54.3 77 28.6


User provided reference genes

Program Settings