Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A502T9 Lonicera japonica HOM05D003998 ORTHO05D005144 8.6e-34 146.4 71 100.0
Lj6A449T10 Lonicera japonica HOM05D003998 ORTHO05D005144 7.5e-30 133.3 71 91.5
Lj6A500T11 Lonicera japonica HOM05D003998 ORTHO05D005144 2.2e-29 131.7 71 88.7
Lj6A492T19 Lonicera japonica HOM05D003998 ORTHO05D005144 8.3e-29 129.8 71 88.7
Lj6A498G14 Lonicera japonica HOM05D003998 ORTHO05D005144 7.3e-25 116.7 71 78.9
Lj6A453G8 Lonicera japonica HOM05D003998 ORTHO05D005144 7.3e-17 90.1 47 89.4
Lj6A454G39 Lonicera japonica HOM05D003998 ORTHO05D005144 1.6e-16 89.0 51 80.4
Lj6C507G7 Lonicera japonica HOM05D003998 ORTHO05D005144 4.7e-16 87.4 51 82.4
Lj6C491G2 Lonicera japonica HOM05D003998 ORTHO05D005144 8.1e-16 86.7 51 78.4
TWI53G1682 Tripterygium wilfordii HOM05D003998 ORTHO05D005144 2.6e-14 81.6 55 70.9
MD01G1010300 Malus domestica HOM05D003998 ORTHO05D005144 3.4e-14 81.3 55 67.3
MD04G1013700 Malus domestica HOM05D003998 ORTHO05D005144 3.4e-14 81.3 55 67.3
Prupe.1G159900 Prunus persica HOM05D003998 ORTHO05D005144 3.4e-14 81.3 51 70.6
FvH4_4g13510 Fragaria vesca HOM05D003998 ORTHO05D005144 4.4e-14 80.9 55 67.3
FAN12G4114 Fragaria x ananassa HOM05D003998 ORTHO05D005144 4.4e-14 80.9 55 67.3
FAN22G0959 Fragaria x ananassa HOM05D003998 ORTHO05D005144 4.4e-14 80.9 55 67.3
GSVIVG01020986001 Vitis vinifera HOM05D003998 ORTHO05D005144 4.4e-14 80.9 49 75.5
Ciclev10004378m.g Citrus clementina HOM05D003998 ORTHO05D005144 7.5e-14 80.1 55 69.1
RcHm_v2.0_Chr4g0414141 Rosa chinensis HOM05D003998 ORTHO05D005144 1.3e-13 79.3 55 65.5
Atru.chr4.1608 Acer truncatum HOM05D003998 ORTHO05D005144 3.7e-13 77.8 55 65.5
MBI11_g07440_MAGBIO Magnolia biondii HOM05D003998 ORTHO05D005144 4.9e-13 77.4 55 63.6
Potri.001G317700 Populus trichocarpa HOM05D003998 ORTHO05D005144 4.9e-13 77.4 49 71.4
TAR362G0495 Trochodendron aralioides HOM05D003998 ORTHO05D005144 6.4e-13 77.0 55 63.6
Dinv38203 Davidia involucrata HOM05D003998 ORTHO05D005144 1.1e-12 76.3 52 71.2
CSS0005254 Camellia sinensis var. sinensis HOM05D003998 ORTHO05D005144 1.4e-12 75.9 51 72.5
Haze_11635 Corylus avellana HOM05D003998 ORTHO05D005144 1.4e-12 75.9 51 64.7
Actinidia35854 Actinidia chinensis HOM05D003998 ORTHO05D005144 1.9e-12 75.5 51 68.6
CiPaw.01G118500 Carya illinoinensis HOM05D003998 ORTHO05D005144 1.9e-12 75.5 55 61.8
Cfa014947 Carpinus fangiana HOM05D003998 ORTHO05D005144 2.4e-12 75.1 51 64.7
Aqoxy2G03902 Aquilegia oxysepala HOM05D003998 ORTHO05D005144 3.2e-12 74.7 55 61.8
arahy.Tifrunner.gnm1.ann1.7DTN51 Arachis hypogaea HOM05D003998 ORTHO05D005144 3.2e-12 74.7 49 67.3
arahy.Tifrunner.gnm1.ann1.DT4C3Q Arachis hypogaea HOM05D003998 ORTHO05D005144 3.2e-12 74.7 49 67.3
CANSAT78G0640 Cannabis sativa HOM05D003998 ORTHO05D005144 3.2e-12 74.7 55 63.6
Sabra16G0201000 Salix brachista HOM05D003998 ORTHO05D005144 3.2e-12 74.7 44 75.0
QL06p026540 Quercus lobata HOM05D003998 ORTHO05D005144 4.1e-12 74.3 43 74.4
Cc03_g08110 Coffea canephora HOM05D003998 ORTHO05D005144 7.1e-12 73.6 55 63.6
Lj6A495G25 Lonicera japonica HOM05D003998 ORTHO05D021041 9.2e-12 73.2 47 74.5
PSO063G6533 Papaver somniferum HOM05D003998 ORTHO05D005144 1.2e-11 72.8 55 58.2
EL10Ac3g07474 Beta vulgaris HOM05D003998 ORTHO05D005144 2.7e-11 71.6 55 61.8
vmacro00453 Vaccinium macrocarpon HOM05D003998 ORTHO05D005144 2.7e-11 71.6 51 66.7
DCAR_026634 Daucus carota HOM05D003998 ORTHO05D005144 3.5e-11 71.2 50 66.0
Lalb_Chr12g0205551 Lupinus albus HOM05D003998 ORTHO05D005144 4.6e-11 70.9 49 67.3
Psat7g074560 Pisum sativum HOM05D003998 ORTHO05D005144 4.6e-11 70.9 49 65.3
Ca_17974_v3 Cicer arietinum L. HOM05D003998 ORTHO05D005144 7.8e-11 70.1 49 63.3
Gohir.A02G020406 Gossypium hirsutum HOM05D003998 ORTHO05D005144 7.8e-11 70.1 55 63.6
Gohir.D02G024300 Gossypium hirsutum HOM05D003998 ORTHO05D005144 7.8e-11 70.1 55 63.6
Gorai.005G030200 Gossypium raimondii HOM05D003998 ORTHO05D005144 7.8e-11 70.1 55 63.6
HanXRQChr15g0488261 Helianthus annuus HOM05D003998 ORTHO05D005144 7.8e-11 70.1 48 70.8
Duzib151G0324 Durio zibethinus HOM05D003998 ORTHO05D005144 1.0e-10 69.7 55 60.0
Lsat_1_v5_gn_2_46500 Lactuca sativa HOM05D003998 ORTHO05D005144 1.0e-10 69.7 48 66.7
Sc13g0000270 Simmondsia chinensis HOM05D003998 ORTHO05D005144 1.0e-10 69.7 55 60.0
AUR62018577 Chenopodium quinoa HOM05D003998 ORTHO05D005144 1.3e-10 69.3 49 65.3
Manes.15G055500 Manihot esculenta HOM05D003998 ORTHO05D005144 1.3e-10 69.3 49 65.3
Nitab4.5_0000401g0150 Nicotiana tabacum HOM05D003998 ORTHO05D005144 1.3e-10 69.3 51 62.7
PSO017G6005 Papaver somniferum HOM05D003998 ORTHO05D005144 1.3e-10 69.3 55 54.5
Medtr8g085220 Medicago truncatula HOM05D003998 ORTHO05D005144 2.3e-10 68.6 49 63.3
Peaxi162Scf00047g00340 Petunia axillaris HOM05D003998 ORTHO05D005144 2.3e-10 68.6 51 62.7
Solyc09g092140.3 Solanum lycopersicum HOM05D003998 ORTHO05D005144 3.0e-10 68.2 51 62.7
PGSC0003DMG400026420 Solanum tuberosum HOM05D003998 ORTHO05D005144 3.0e-10 68.2 51 62.7
Nitab4.5_0004231g0010 Nicotiana tabacum HOM05D003998 ORTHO05D005144 3.9e-10 67.8 51 62.7
unitig_22.g6826 Utricularia gibba HOM05D003998 ORTHO05D005144 3.9e-10 67.8 51 60.8
Lj4g0023654 Lotus japonicus HOM05D003998 ORTHO05D005144 5.1e-10 67.4 49 59.2
Glyma.05G153400 Glycine max HOM05D003998 ORTHO05D005144 6.6e-10 67.0 49 57.1
Ah.13g078040 Amaranthus hybridus HOM05D003998 ORTHO05D005144 8.6e-10 66.6 49 63.3
ClCG05G003230 Citrullus lanatus HOM05D003998 ORTHO05D005144 8.6e-10 66.6 49 65.3
MELO3C006304.2 Cucumis melo HOM05D003998 ORTHO05D005144 8.6e-10 66.6 49 65.3
CsaV3_3G010860 Cucumis sativus L. HOM05D003998 ORTHO05D005144 8.6e-10 66.6 49 65.3
Sopen09g035020 Solanum pennellii HOM05D003998 ORTHO05D005144 8.6e-10 66.6 51 60.8
TPR.G11885 Trifolium pratense HOM05D003998 ORTHO05D005144 8.6e-10 66.6 49 61.2
AUR62020839 Chenopodium quinoa HOM05D003998 ORTHO05D005144 1.5e-09 65.9 49 63.3
Phvul.003G050000 Phaseolus vulgaris HOM05D003998 ORTHO05D005144 1.5e-09 65.9 49 57.1
Thecc.04G198600 Theobroma cacao HOM05D003998 ORTHO05D005144 1.5e-09 65.9 55 60.0
Sed0015957 Sechium edule HOM05D003998 ORTHO05D005144 1.9e-09 65.5 49 63.3
PGR083G0268 Punica granatum HOM05D003998 ORTHO05D005144 2.5e-09 65.1 51 52.9
THA.LOC104826185 Tarenaya hassleriana HOM05D003998 ORTHO05D005144 2.5e-09 65.1 54 51.9
COL.COLO4_20194 Corchorus olitorius HOM05D003998 ORTHO05D005144 4.3e-09 64.3 55 58.2
Glyma.08G111100 Glycine max HOM05D003998 ORTHO05D005144 4.3e-09 64.3 49 55.1
MSTRG.21978 Avicennia marina HOM05D003998 ORTHO05D005144 7.3e-09 63.5 51 60.8
Nn1g07939 Nelumbo nucifera HOM05D003998 ORTHO05D005144 9.5e-09 63.2 41 68.3
SGA_v2.0_scaffold128G34122 Striga asiatica HOM05D003998 ORTHO05D005144 9.5e-09 63.2 52 57.7
VMungo0251G3649 Vigna mungo HOM05D003998 ORTHO05D005144 9.5e-09 63.2 49 55.1
CAN.G1648.3 Capsicum annuum HOM05D003998 ORTHO05D005144 1.2e-08 62.8 50 58.0
ECA232G0954 Erigeron canadensis HOM05D003998 ORTHO05D005144 2.1e-08 62.0 48 60.4
Os04g0379300 Oryza sativa ssp. japonica HOM05D003998 ORTHO05D005144 2.1e-08 62.0 55 50.9
Aa31LG5G5250 Aethionema arabicum HOM05D003998 ORTHO05D005144 3.6e-08 61.2 49 57.1
ATR0605G199 Amborella trichopoda HOM05D003998 ORTHO05D005144 3.6e-08 61.2 49 59.2
HPP92_024546 Vanilla planifolia HOM05D003998 ORTHO05D005144 3.6e-08 61.2 49 59.2
Thhalv10016302m.g Eutrema salsugineum HOM05D003998 ORTHO05D005144 8.1e-08 60.1 49 53.1
SalBow3G3008 Salvia bowleyana HOM05D003998 ORTHO05D005144 1.1e-07 59.7 55 52.7
Zm00001eb420660 Zea mays HOM05D003998 ORTHO05D005144 1.8e-07 58.9 53 52.8
A05p13770 Brassica napus HOM05D003998 ORTHO05D005144 3.1e-07 58.2 49 51.0
C04p18040 Brassica napus HOM05D003998 ORTHO05D005144 3.1e-07 58.2 49 49.0
BolC4t23351H Brassica oleracea HOM05D003998 ORTHO05D005144 3.1e-07 58.2 49 49.0
BraA05t20313Z Brassica rapa HOM05D003998 ORTHO05D005144 3.1e-07 58.2 49 51.0
Carub.0004s1305 Capsella rubella HOM05D003998 ORTHO05D005144 3.1e-07 58.2 49 51.0
Migut.N00415 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.1e-07 58.2 51 54.9
Eucgr.H02738 Eucalyptus grandis HOM05D003998 ORTHO05D005144 3.1e-07 58.2 52 57.7
CARHR125430 Cardamine hirsuta HOM05D003998 ORTHO05D005144 4.0e-07 57.8 49 51.0
SHI00910 Sapria himalayana HOM05D003998 ORTHO05D005144 4.0e-07 57.8 44 63.6
AL4G27000 Arabidopsis lyrata HOM05D003998 ORTHO05D005144 5.2e-07 57.4 49 51.0
Sp4g14180 Schrenkiella parvula HOM05D003998 ORTHO05D005144 5.2e-07 57.4 49 51.0
BcaB02g10415 Brassica carinata HOM05D003998 ORTHO05D005144 1.2e-06 56.2 49 49.0
Rhsim09G0058600 Rhododendron simsii HOM05D003998 ORTHO05D005144 1.2e-06 56.2 77 44.2
AT2G31740 Arabidopsis thaliana HOM05D003998 ORTHO05D005144 2.6e-06 55.1 49 51.0


User provided reference genes

Program Settings