Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A500T11 Lonicera japonica HOM05D003998 ORTHO05D005144 1.9e-40 168.7 83 100.0
Lj6A449T10 Lonicera japonica HOM05D003998 ORTHO05D005144 3.9e-38 161.0 83 95.2
Lj6A498G14 Lonicera japonica HOM05D003998 ORTHO05D005144 5.3e-35 150.6 82 90.2
Lj6A492T19 Lonicera japonica HOM05D003998 ORTHO05D005144 4.7e-31 137.5 71 94.4
Lj6A502T9 Lonicera japonica HOM05D003998 ORTHO05D005144 3.3e-29 131.3 71 88.7
Lj6A454G39 Lonicera japonica HOM05D003998 ORTHO05D005144 1.7e-25 119.0 67 86.6
Lj6C491G2 Lonicera japonica HOM05D003998 ORTHO05D005144 8.5e-25 116.7 67 85.1
Lj6C507G7 Lonicera japonica HOM05D003998 ORTHO05D005144 5.5e-24 114.0 67 85.1
GSVIVG01020986001 Vitis vinifera HOM05D003998 ORTHO05D005144 2.6e-21 105.1 61 82.0
TWI53G1682 Tripterygium wilfordii HOM05D003998 ORTHO05D005144 8.2e-20 100.1 63 77.8
Actinidia35854 Actinidia chinensis HOM05D003998 ORTHO05D005144 1.4e-19 99.4 67 71.6
Ciclev10004378m.g Citrus clementina HOM05D003998 ORTHO05D005144 1.4e-19 99.4 63 76.2
FvH4_4g13510 Fragaria vesca HOM05D003998 ORTHO05D005144 2.4e-19 98.6 63 74.6
FAN12G4114 Fragaria x ananassa HOM05D003998 ORTHO05D005144 2.4e-19 98.6 63 74.6
FAN22G0959 Fragaria x ananassa HOM05D003998 ORTHO05D005144 2.4e-19 98.6 63 74.6
Prupe.1G159900 Prunus persica HOM05D003998 ORTHO05D005144 2.4e-19 98.6 63 74.6
MD01G1010300 Malus domestica HOM05D003998 ORTHO05D005144 4.1e-19 97.8 63 73.0
MD04G1013700 Malus domestica HOM05D003998 ORTHO05D005144 4.1e-19 97.8 63 73.0
Lj6A453G8 Lonicera japonica HOM05D003998 ORTHO05D005144 5.3e-19 97.4 47 97.9
vmacro00453 Vaccinium macrocarpon HOM05D003998 ORTHO05D005144 7.0e-19 97.1 67 71.6
CiPaw.01G118500 Carya illinoinensis HOM05D003998 ORTHO05D005144 9.1e-19 96.7 63 73.0
Atru.chr4.1608 Acer truncatum HOM05D003998 ORTHO05D005144 1.2e-18 96.3 63 73.0
Potri.001G317700 Populus trichocarpa HOM05D003998 ORTHO05D005144 1.2e-18 96.3 61 72.1
RcHm_v2.0_Chr4g0414141 Rosa chinensis HOM05D003998 ORTHO05D005144 1.2e-18 96.3 63 73.0
CANSAT78G0640 Cannabis sativa HOM05D003998 ORTHO05D005144 1.6e-18 95.9 63 73.0
Haze_11635 Corylus avellana HOM05D003998 ORTHO05D005144 1.6e-18 95.9 62 72.6
Cfa014947 Carpinus fangiana HOM05D003998 ORTHO05D005144 2.7e-18 95.1 63 71.4
Dinv38203 Davidia involucrata HOM05D003998 ORTHO05D005144 2.7e-18 95.1 68 70.6
Nitab4.5_0004231g0010 Nicotiana tabacum HOM05D003998 ORTHO05D005144 2.7e-18 95.1 67 67.2
CSS0005254 Camellia sinensis var. sinensis HOM05D003998 ORTHO05D005144 4.5e-18 94.4 67 71.6
TAR362G0495 Trochodendron aralioides HOM05D003998 ORTHO05D005144 7.7e-18 93.6 63 69.8
QL06p026540 Quercus lobata HOM05D003998 ORTHO05D005144 1.0e-17 93.2 55 78.2
Nitab4.5_0000401g0150 Nicotiana tabacum HOM05D003998 ORTHO05D005144 1.7e-17 92.4 67 65.7
Sabra16G0201000 Salix brachista HOM05D003998 ORTHO05D005144 1.7e-17 92.4 56 73.2
arahy.Tifrunner.gnm1.ann1.7DTN51 Arachis hypogaea HOM05D003998 ORTHO05D005144 2.2e-17 92.0 61 72.1
arahy.Tifrunner.gnm1.ann1.DT4C3Q Arachis hypogaea HOM05D003998 ORTHO05D005144 2.2e-17 92.0 61 72.1
MBI11_g07440_MAGBIO Magnolia biondii HOM05D003998 ORTHO05D005144 3.8e-17 91.3 63 66.7
Ca_17974_v3 Cicer arietinum L. HOM05D003998 ORTHO05D005144 5.0e-17 90.9 61 68.9
DCAR_026634 Daucus carota HOM05D003998 ORTHO05D005144 5.0e-17 90.9 67 67.2
Cc03_g08110 Coffea canephora HOM05D003998 ORTHO05D005144 6.5e-17 90.5 67 64.2
Lalb_Chr12g0205551 Lupinus albus HOM05D003998 ORTHO05D005144 8.5e-17 90.1 61 72.1
Lj4g0023654 Lotus japonicus HOM05D003998 ORTHO05D005144 1.9e-16 89.0 61 65.6
Peaxi162Scf00047g00340 Petunia axillaris HOM05D003998 ORTHO05D005144 2.5e-16 88.6 67 65.7
Solyc09g092140.3 Solanum lycopersicum HOM05D003998 ORTHO05D005144 2.5e-16 88.6 67 64.2
Psat7g074560 Pisum sativum HOM05D003998 ORTHO05D005144 3.2e-16 88.2 61 67.2
Aqoxy2G03902 Aquilegia oxysepala HOM05D003998 ORTHO05D005144 4.2e-16 87.8 63 65.1
TPR.G11885 Trifolium pratense HOM05D003998 ORTHO05D005144 4.2e-16 87.8 61 67.2
Manes.15G055500 Manihot esculenta HOM05D003998 ORTHO05D005144 5.5e-16 87.4 61 68.9
PGSC0003DMG400026420 Solanum tuberosum HOM05D003998 ORTHO05D005144 5.5e-16 87.4 67 62.7
unitig_22.g6826 Utricularia gibba HOM05D003998 ORTHO05D005144 5.5e-16 87.4 67 62.7
Medtr8g085220 Medicago truncatula HOM05D003998 ORTHO05D005144 7.2e-16 87.0 61 67.2
Sopen09g035020 Solanum pennellii HOM05D003998 ORTHO05D005144 7.2e-16 87.0 67 62.7
Gohir.A02G020406 Gossypium hirsutum HOM05D003998 ORTHO05D005144 9.4e-16 86.7 63 68.3
Gohir.D02G024300 Gossypium hirsutum HOM05D003998 ORTHO05D005144 9.4e-16 86.7 63 68.3
PSO063G6533 Papaver somniferum HOM05D003998 ORTHO05D005144 9.4e-16 86.7 63 63.5
Sc13g0000270 Simmondsia chinensis HOM05D003998 ORTHO05D005144 1.2e-15 86.3 67 61.2
Duzib151G0324 Durio zibethinus HOM05D003998 ORTHO05D005144 2.1e-15 85.5 63 65.1
Gorai.005G030200 Gossypium raimondii HOM05D003998 ORTHO05D005144 2.1e-15 85.5 63 68.3
Lsat_1_v5_gn_2_46500 Lactuca sativa HOM05D003998 ORTHO05D005144 2.1e-15 85.5 67 62.7
Glyma.08G111100 Glycine max HOM05D003998 ORTHO05D005144 3.6e-15 84.7 61 62.3
EL10Ac3g07474 Beta vulgaris HOM05D003998 ORTHO05D005144 4.7e-15 84.3 63 61.9
HanXRQChr15g0488261 Helianthus annuus HOM05D003998 ORTHO05D005144 8.0e-15 83.6 61 68.9
Rhsim09G0058600 Rhododendron simsii HOM05D003998 ORTHO05D005144 8.0e-15 83.6 89 53.9
PSO017G6005 Papaver somniferum HOM05D003998 ORTHO05D005144 1.0e-14 83.2 63 60.3
AUR62018577 Chenopodium quinoa HOM05D003998 ORTHO05D005144 2.3e-14 82.0 61 62.3
Ah.13g078040 Amaranthus hybridus HOM05D003998 ORTHO05D005144 3.0e-14 81.6 61 63.9
MSTRG.21978 Avicennia marina HOM05D003998 ORTHO05D005144 3.0e-14 81.6 67 61.2
Glyma.05G153400 Glycine max HOM05D003998 ORTHO05D005144 3.0e-14 81.6 61 60.7
Thecc.04G198600 Theobroma cacao HOM05D003998 ORTHO05D005144 3.0e-14 81.6 63 65.1
Lj6A495G25 Lonicera japonica HOM05D003998 ORTHO05D021041 4.0e-14 81.3 51 78.4
Nn1g07939 Nelumbo nucifera HOM05D003998 ORTHO05D005144 4.0e-14 81.3 53 73.6
Phvul.003G050000 Phaseolus vulgaris HOM05D003998 ORTHO05D005144 5.2e-14 80.9 61 60.7
THA.LOC104826185 Tarenaya hassleriana HOM05D003998 ORTHO05D005144 5.2e-14 80.9 63 58.7
AUR62020839 Chenopodium quinoa HOM05D003998 ORTHO05D005144 1.2e-13 79.7 61 62.3
ClCG05G003230 Citrullus lanatus HOM05D003998 ORTHO05D005144 1.2e-13 79.7 78 55.1
MELO3C006304.2 Cucumis melo HOM05D003998 ORTHO05D005144 1.2e-13 79.7 78 55.1
CsaV3_3G010860 Cucumis sativus L. HOM05D003998 ORTHO05D005144 1.2e-13 79.7 78 55.1
COL.COLO4_20194 Corchorus olitorius HOM05D003998 ORTHO05D005144 1.5e-13 79.3 63 63.5
CAN.G1648.3 Capsicum annuum HOM05D003998 ORTHO05D005144 2.0e-13 79.0 67 56.7
Eucgr.H02738 Eucalyptus grandis HOM05D003998 ORTHO05D005144 3.4e-13 78.2 67 59.7
Sed0015957 Sechium edule HOM05D003998 ORTHO05D005144 3.4e-13 78.2 78 52.6
VMungo0251G3649 Vigna mungo HOM05D003998 ORTHO05D005144 3.4e-13 78.2 61 59.0
Thhalv10016302m.g Eutrema salsugineum HOM05D003998 ORTHO05D005144 4.4e-13 77.8 61 60.7
ECA232G0954 Erigeron canadensis HOM05D003998 ORTHO05D005144 5.7e-13 77.4 67 56.7
SHI00910 Sapria himalayana HOM05D003998 ORTHO05D005144 7.5e-13 77.0 56 69.6
Aa31LG5G5250 Aethionema arabicum HOM05D003998 ORTHO05D005144 9.8e-13 76.6 60 61.7
Migut.N00415 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.3e-12 76.3 67 58.2
PGR083G0268 Punica granatum HOM05D003998 ORTHO05D005144 1.3e-12 76.3 67 52.2
SalBow3G3008 Salvia bowleyana HOM05D003998 ORTHO05D005144 1.3e-12 76.3 63 60.3
HPP92_024546 Vanilla planifolia HOM05D003998 ORTHO05D005144 1.7e-12 75.9 61 60.7
Os04g0379300 Oryza sativa ssp. japonica HOM05D003998 ORTHO05D005144 2.2e-12 75.5 63 55.6
AL4G27000 Arabidopsis lyrata HOM05D003998 ORTHO05D005144 4.8e-12 74.3 61 57.4
Sp4g14180 Schrenkiella parvula HOM05D003998 ORTHO05D005144 4.8e-12 74.3 61 57.4
CARHR125430 Cardamine hirsuta HOM05D003998 ORTHO05D005144 6.3e-12 73.9 61 57.4
Carub.0004s1305 Capsella rubella HOM05D003998 ORTHO05D005144 8.3e-12 73.6 61 55.7
ATR0605G199 Amborella trichopoda HOM05D003998 ORTHO05D005144 1.1e-11 73.2 61 59.0
A05p13770 Brassica napus HOM05D003998 ORTHO05D005144 1.1e-11 73.2 61 55.7
C04p18040 Brassica napus HOM05D003998 ORTHO05D005144 1.1e-11 73.2 61 54.1
BolC4t23351H Brassica oleracea HOM05D003998 ORTHO05D005144 1.1e-11 73.2 61 54.1
BraA05t20313Z Brassica rapa HOM05D003998 ORTHO05D005144 1.1e-11 73.2 61 55.7
AT2G31740 Arabidopsis thaliana HOM05D003998 ORTHO05D005144 2.4e-11 72.0 61 57.4
BcaB02g10415 Brassica carinata HOM05D003998 ORTHO05D005144 3.1e-11 71.6 61 54.1
Zm00001eb420660 Zea mays HOM05D003998 ORTHO05D005144 4.5e-10 67.8 63 55.6
SGA_v2.0_scaffold128G34122 Striga asiatica HOM05D003998 ORTHO05D005144 5.0e-09 64.3 52 59.6
Migut.I00213 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.5e-08 62.8 82 42.7
Hund24398 Selenicereus undatus HOM05D003998 ORTHO05D005144 4.2e-08 61.2 40 70.0
Migut.I00434 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.6e-07 58.2 60 51.7
Migut.I00433 Erythranthe guttata HOM05D003998 ORTHO05D005144 8.0e-07 57.0 67 35.8
Migut.N00409 Erythranthe guttata HOM05D003998 ORTHO05D005144 5.2e-06 54.3 66 45.5


User provided reference genes

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