Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A498G14 Lonicera japonica HOM05D003998 ORTHO05D005144 1.9e-127 459.1 229 100.0
Lj6A454G39 Lonicera japonica HOM05D003998 ORTHO05D005144 4.8e-94 348.2 241 76.8
Lj6C491G2 Lonicera japonica HOM05D003998 ORTHO05D005144 1.1e-93 347.1 241 75.9
Lj6C507G7 Lonicera japonica HOM05D003998 ORTHO05D005144 5.1e-88 328.2 241 73.9
Dinv38203 Davidia involucrata HOM05D003998 ORTHO05D005144 3.0e-72 275.8 246 58.5
Actinidia35854 Actinidia chinensis HOM05D003998 ORTHO05D005144 9.1e-69 264.2 241 56.8
TWI53G1682 Tripterygium wilfordii HOM05D003998 ORTHO05D005144 2.0e-68 263.1 237 58.6
DCAR_026634 Daucus carota HOM05D003998 ORTHO05D005144 1.1e-66 257.3 241 58.5
CSS0005254 Camellia sinensis var. sinensis HOM05D003998 ORTHO05D005144 4.7e-65 251.9 241 54.4
TAR362G0495 Trochodendron aralioides HOM05D003998 ORTHO05D005144 3.0e-64 249.2 237 56.1
vmacro00453 Vaccinium macrocarpon HOM05D003998 ORTHO05D005144 3.0e-64 249.2 241 53.9
Gohir.A02G020406 Gossypium hirsutum HOM05D003998 ORTHO05D005144 3.4e-63 245.7 237 55.7
Atru.chr4.1608 Acer truncatum HOM05D003998 ORTHO05D005144 5.7e-63 245.0 237 53.6
Gohir.D02G024300 Gossypium hirsutum HOM05D003998 ORTHO05D005144 1.3e-62 243.8 237 54.4
Gorai.005G030200 Gossypium raimondii HOM05D003998 ORTHO05D005144 1.3e-62 243.8 237 54.9
Ciclev10004378m.g Citrus clementina HOM05D003998 ORTHO05D005144 6.3e-62 241.5 237 53.6
Haze_11635 Corylus avellana HOM05D003998 ORTHO05D005144 1.1e-61 240.7 209 58.4
CANSAT78G0640 Cannabis sativa HOM05D003998 ORTHO05D005144 1.4e-61 240.4 237 54.0
Thecc.04G198600 Theobroma cacao HOM05D003998 ORTHO05D005144 7.0e-61 238.0 237 54.0
COL.COLO4_20194 Corchorus olitorius HOM05D003998 ORTHO05D005144 1.2e-60 237.3 237 53.2
Lsat_1_v5_gn_2_46500 Lactuca sativa HOM05D003998 ORTHO05D005144 4.5e-60 235.3 241 51.9
MD04G1013700 Malus domestica HOM05D003998 ORTHO05D005144 4.5e-60 235.3 237 52.7
Prupe.1G159900 Prunus persica HOM05D003998 ORTHO05D005144 1.7e-59 233.4 237 52.7
Cc03_g08110 Coffea canephora HOM05D003998 ORTHO05D005144 5.0e-59 231.9 241 51.0
Potri.001G317700 Populus trichocarpa HOM05D003998 ORTHO05D005144 5.0e-59 231.9 235 51.1
Lj6A508G27 Lonicera japonica HOM05D003998 ORTHO05D005144 8.5e-59 231.1 148 84.5
MBI11_g07440_MAGBIO Magnolia biondii HOM05D003998 ORTHO05D005144 2.5e-58 229.6 237 51.9
Rhsim09G0058600 Rhododendron simsii HOM05D003998 ORTHO05D005144 2.5e-58 229.6 275 48.0
PSO017G6005 Papaver somniferum HOM05D003998 ORTHO05D005144 4.2e-58 228.8 237 49.4
PSO063G6533 Papaver somniferum HOM05D003998 ORTHO05D005144 5.5e-58 228.4 237 49.4
RcHm_v2.0_Chr4g0414141 Rosa chinensis HOM05D003998 ORTHO05D005144 7.2e-58 228.0 237 51.5
FAN22G0959 Fragaria x ananassa HOM05D003998 ORTHO05D005144 9.4e-58 227.6 237 51.5
CiPaw.01G118500 Carya illinoinensis HOM05D003998 ORTHO05D005144 1.2e-57 227.3 237 51.5
FvH4_4g13510 Fragaria vesca HOM05D003998 ORTHO05D005144 2.1e-57 226.5 237 51.1
QL06p026540 Quercus lobata HOM05D003998 ORTHO05D005144 3.6e-57 225.7 231 52.4
Manes.15G055500 Manihot esculenta HOM05D003998 ORTHO05D005144 6.1e-57 224.9 235 52.3
FAN12G4114 Fragaria x ananassa HOM05D003998 ORTHO05D005144 3.0e-56 222.6 237 50.6
Aqoxy2G03902 Aquilegia oxysepala HOM05D003998 ORTHO05D005144 6.8e-56 221.5 237 49.4
Sabra16G0201000 Salix brachista HOM05D003998 ORTHO05D005144 6.8e-56 221.5 234 49.6
Cfa014947 Carpinus fangiana HOM05D003998 ORTHO05D005144 8.8e-56 221.1 237 50.6
Lj6A518T3 Lonicera japonica HOM05D003998 ORTHO05D005144 8.8e-56 221.1 128 89.8
HanXRQChr15g0488261 Helianthus annuus HOM05D003998 ORTHO05D005144 1.5e-55 220.3 237 51.9
Sc13g0000270 Simmondsia chinensis HOM05D003998 ORTHO05D005144 1.5e-55 220.3 241 49.0
Peaxi162Scf00047g00340 Petunia axillaris HOM05D003998 ORTHO05D005144 7.5e-55 218.0 239 49.8
Nn1g07939 Nelumbo nucifera HOM05D003998 ORTHO05D005144 1.3e-54 217.2 227 52.0
Nitab4.5_0000401g0150 Nicotiana tabacum HOM05D003998 ORTHO05D005144 1.3e-54 217.2 241 49.0
Sed0015957 Sechium edule HOM05D003998 ORTHO05D005144 2.4e-53 213.0 252 46.8
Solyc09g092140.3 Solanum lycopersicum HOM05D003998 ORTHO05D005144 4.1e-53 212.2 241 46.9
PGSC0003DMG400026420 Solanum tuberosum HOM05D003998 ORTHO05D005144 5.4e-53 211.8 241 46.9
CsaV3_3G010860 Cucumis sativus L. HOM05D003998 ORTHO05D005144 9.1e-53 211.1 252 46.4
AUR62018577 Chenopodium quinoa HOM05D003998 ORTHO05D005144 1.2e-52 210.7 235 49.4
EL10Ac3g07474 Beta vulgaris HOM05D003998 ORTHO05D005144 1.6e-52 210.3 237 47.3
MELO3C006304.2 Cucumis melo HOM05D003998 ORTHO05D005144 1.6e-52 210.3 252 46.4
Lj6A500G11 Lonicera japonica HOM05D003998 ORTHO05D005144 1.6e-52 210.3 117 92.3
Lalb_Chr12g0205551 Lupinus albus HOM05D003998 ORTHO05D005144 2.0e-52 209.9 235 50.6
ClCG05G003230 Citrullus lanatus HOM05D003998 ORTHO05D005144 2.7e-52 209.5 252 45.6
PGR083G0268 Punica granatum HOM05D003998 ORTHO05D005144 4.5e-52 208.8 242 46.3
AUR62020839 Chenopodium quinoa HOM05D003998 ORTHO05D005144 5.9e-52 208.4 235 49.4
Hund24398 Selenicereus undatus HOM05D003998 ORTHO05D005144 1.0e-51 207.6 219 49.8
Nitab4.5_0004231g0010 Nicotiana tabacum HOM05D003998 ORTHO05D005144 1.7e-51 206.8 241 48.1
THA.LOC104826185 Tarenaya hassleriana HOM05D003998 ORTHO05D005144 1.7e-51 206.8 237 48.1
Eucgr.H02738 Eucalyptus grandis HOM05D003998 ORTHO05D005144 2.3e-51 206.5 241 47.3
Sopen09g035020 Solanum pennellii HOM05D003998 ORTHO05D005144 2.3e-51 206.5 241 45.6
Lj6A449T9 Lonicera japonica HOM05D003998 ORTHO05D005144 3.8e-51 205.7 117 91.5
SGA_v2.0_scaffold128G34122 Striga asiatica HOM05D003998 ORTHO05D005144 1.1e-50 204.1 243 47.3
arahy.Tifrunner.gnm1.ann1.DT4C3Q Arachis hypogaea HOM05D003998 ORTHO05D005144 1.9e-50 203.4 235 48.5
CAN.G1648.3 Capsicum annuum HOM05D003998 ORTHO05D005144 7.2e-50 201.4 241 44.8
Ca_17974_v3 Cicer arietinum L. HOM05D003998 ORTHO05D005144 7.2e-50 201.4 235 48.5
Psat7g074560 Pisum sativum HOM05D003998 ORTHO05D005144 1.6e-49 200.3 235 47.2
Lj4g0023654 Lotus japonicus HOM05D003998 ORTHO05D005144 2.1e-49 199.9 237 46.0
Glyma.05G153400 Glycine max HOM05D003998 ORTHO05D005144 2.8e-49 199.5 235 46.8
GSVIVG01020986001 Vitis vinifera HOM05D003998 ORTHO05D005144 3.6e-49 199.1 207 51.2
Glyma.08G111100 Glycine max HOM05D003998 ORTHO05D005144 6.1e-49 198.4 235 46.4
Ah.13g078040 Amaranthus hybridus HOM05D003998 ORTHO05D005144 1.4e-48 197.2 236 47.5
MD01G1010300 Malus domestica HOM05D003998 ORTHO05D005144 1.5e-47 193.7 237 46.4
Medtr8g085220 Medicago truncatula HOM05D003998 ORTHO05D005144 1.5e-47 193.7 235 46.0
MSTRG.21978 Avicennia marina HOM05D003998 ORTHO05D005144 3.4e-47 192.6 242 45.5
Thhalv10016302m.g Eutrema salsugineum HOM05D003998 ORTHO05D005144 3.4e-47 192.6 235 47.2
Aa31LG5G5250 Aethionema arabicum HOM05D003998 ORTHO05D005144 4.9e-46 188.7 242 45.9
Phvul.003G050000 Phaseolus vulgaris HOM05D003998 ORTHO05D005144 6.3e-46 188.3 235 43.8
arahy.Tifrunner.gnm1.ann1.7DTN51 Arachis hypogaea HOM05D003998 ORTHO05D005144 8.3e-46 188.0 224 47.8
VMungo0251G3649 Vigna mungo HOM05D003998 ORTHO05D005144 1.1e-45 187.6 235 44.3
ATR0605G199 Amborella trichopoda HOM05D003998 ORTHO05D005144 1.4e-45 187.2 237 43.5
TPR.G11885 Trifolium pratense HOM05D003998 ORTHO05D005144 5.4e-45 185.3 235 44.7
ECA232G0954 Erigeron canadensis HOM05D003998 ORTHO05D005144 9.2e-45 184.5 241 44.0
Sp4g14180 Schrenkiella parvula HOM05D003998 ORTHO05D005144 1.2e-44 184.1 235 45.5
AL4G27000 Arabidopsis lyrata HOM05D003998 ORTHO05D005144 5.9e-44 181.8 235 43.8
AT2G31740 Arabidopsis thaliana HOM05D003998 ORTHO05D005144 5.9e-44 181.8 235 43.8
A05p13770 Brassica napus HOM05D003998 ORTHO05D005144 1.7e-43 180.3 235 44.3
C04p18040 Brassica napus HOM05D003998 ORTHO05D005144 2.3e-43 179.9 235 43.8
BolC4t23351H Brassica oleracea HOM05D003998 ORTHO05D005144 2.3e-43 179.9 235 43.8
BraA05t20313Z Brassica rapa HOM05D003998 ORTHO05D005144 2.9e-43 179.5 235 44.3
Carub.0004s1305 Capsella rubella HOM05D003998 ORTHO05D005144 2.9e-43 179.5 235 44.3
SalBow3G3008 Salvia bowleyana HOM05D003998 ORTHO05D005144 3.9e-43 179.1 238 42.4
CARHR125430 Cardamine hirsuta HOM05D003998 ORTHO05D005144 8.6e-43 177.9 235 43.4
Migut.N00415 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.5e-42 177.2 250 43.2
unitig_22.g6826 Utricularia gibba HOM05D003998 ORTHO05D005144 5.6e-42 175.3 242 42.1
Duzib151G0324 Durio zibethinus HOM05D003998 ORTHO05D005144 6.8e-40 168.3 178 52.8
Lj6A496T18 Lonicera japonica HOM05D003998 ORTHO05D005144 3.4e-39 166.0 156 63.5
SHI00910 Sapria himalayana HOM05D003998 ORTHO05D005144 1.9e-37 160.2 230 42.2
Os04g0379300 Oryza sativa ssp. japonica HOM05D003998 ORTHO05D005144 4.1e-37 159.1 237 39.2
BcaB02g10415 Brassica carinata HOM05D003998 ORTHO05D005144 6.6e-35 151.8 235 40.4
Lj6A453G8 Lonicera japonica HOM05D003998 ORTHO05D005144 8.6e-35 151.4 150 59.3
Zm00001eb420660 Zea mays HOM05D003998 ORTHO05D005144 8.6e-35 151.4 237 39.7
Lj6A500T11 Lonicera japonica HOM05D003998 ORTHO05D005144 1.9e-34 150.2 82 90.2
Migut.I00213 Erythranthe guttata HOM05D003998 ORTHO05D005144 6.2e-33 145.2 258 37.2
Lj6A449T10 Lonicera japonica HOM05D003998 ORTHO05D005144 4.0e-32 142.5 82 85.4
Lj6A504G7 Lonicera japonica HOM05D003998 ORTHO05D005144 8.9e-32 141.4 94 81.9
Lj6A495G25 Lonicera japonica HOM05D003998 ORTHO05D021041 2.0e-31 140.2 154 54.5
Migut.I00432 Erythranthe guttata HOM05D003998 ORTHO05D005144 4.1e-29 132.5 229 37.6
Migut.I00433 Erythranthe guttata HOM05D003998 ORTHO05D005144 5.4e-29 132.1 241 33.6
Migut.N00408 Erythranthe guttata HOM05D003998 ORTHO05D005144 5.4e-29 132.1 255 37.6
Migut.N00409 Erythranthe guttata HOM05D003998 ORTHO05D005144 9.2e-29 131.3 235 37.0
Migut.N00410 Erythranthe guttata HOM05D003998 ORTHO05D005144 4.3e-26 122.5 220 37.7
Lj6A492T19 Lonicera japonica HOM05D003998 ORTHO05D005144 1.2e-25 120.9 71 83.1
SEGI_17124 Sequoiadendron giganteum HOM05D003998 ORTHO05D005144 3.6e-25 119.4 148 41.9
Migut.I00434 Erythranthe guttata HOM05D003998 ORTHO05D005144 6.2e-25 118.6 235 37.0
Oeu025025.1 Olea europaea HOM05D003998 ORTHO05D005144 8.1e-25 118.2 150 44.7
Migut.N00411 Erythranthe guttata HOM05D003998 ORTHO05D005144 4.0e-24 115.9 238 35.3
Lj6A502T9 Lonicera japonica HOM05D003998 ORTHO05D005144 4.0e-24 115.9 71 78.9
Migut.I00431 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.4e-23 112.8 250 31.6
Migut.N00413 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.9e-22 109.8 228 33.8
Migut.F01776 Erythranthe guttata HOM05D003998 ORTHO05D005144 4.1e-21 105.9 242 32.6
Migut.B00567 Erythranthe guttata HOM05D003998 ORTHO05D005144 5.4e-21 105.5 203 32.5
Migut.F01532 Erythranthe guttata HOM05D003998 ORTHO05D005144 9.2e-21 104.8 239 30.5
Migut.N00785 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.7e-20 103.2 188 35.6
Migut.F01777 Erythranthe guttata HOM05D003998 ORTHO05D005144 7.8e-20 101.7 238 32.4
Migut.H01109 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.9e-19 99.4 238 31.9
Migut.F01720 Erythranthe guttata HOM05D003998 ORTHO05D005144 8.6e-19 98.2 240 31.7
Migut.O00105 Erythranthe guttata HOM05D003998 ORTHO05D005144 9.6e-18 94.7 243 30.5
Migut.N00888 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.4e-16 90.9 236 29.2
AagrBONN_evm.TU.Sc2ySwM_117.2891 Anthoceros agrestis HOM05D003998 ORTHO05D005144 1.4e-13 80.9 246 28.9
Mapoly0151s0004 Marchantia polymorpha HOM05D003998 ORTHO05D005144 1.3e-11 74.3 235 28.9
Migut.N00412 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.9e-10 70.5 92 42.4
Prupe.1G159800 Prunus persica HOM05D003998 ORTHO05D005144 1.9e-10 70.5 87 44.8
HPP92_024546 Vanilla planifolia HOM05D003998 ORTHO05D005144 3.3e-10 69.7 109 38.5
Migut.H01297 Erythranthe guttata HOM05D000247 ORTHO05D003114 1.3e-09 67.8 209 30.6


User provided reference genes

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