Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A496T18 Lonicera japonica HOM05D003998 ORTHO05D005144 5.9e-77 290.8 150 100.0
Lj6A508G27 Lonicera japonica HOM05D003998 ORTHO05D005144 2.2e-47 192.6 153 73.9
Lj6A454G39 Lonicera japonica HOM05D003998 ORTHO05D005144 2.9e-39 165.6 154 66.2
Lj6C491G2 Lonicera japonica HOM05D003998 ORTHO05D005144 3.8e-39 165.2 154 65.6
Lj6A498G14 Lonicera japonica HOM05D003998 ORTHO05D005144 2.4e-38 162.5 156 63.5
Lj6C507G7 Lonicera japonica HOM05D003998 ORTHO05D005144 1.5e-35 153.3 102 81.4
Dinv38203 Davidia involucrata HOM05D003998 ORTHO05D005144 7.1e-30 134.4 102 66.7
DCAR_026634 Daucus carota HOM05D003998 ORTHO05D005144 1.3e-26 123.6 101 65.3
COL.COLO4_20194 Corchorus olitorius HOM05D003998 ORTHO05D005144 1.6e-26 123.2 122 56.6
Thecc.04G198600 Theobroma cacao HOM05D003998 ORTHO05D005144 2.8e-26 122.5 102 62.7
TWI53G1682 Tripterygium wilfordii HOM05D003998 ORTHO05D005144 2.8e-26 122.5 102 60.8
Lj6A518T3 Lonicera japonica HOM05D003998 ORTHO05D005144 4.8e-26 121.7 135 60.7
Actinidia35854 Actinidia chinensis HOM05D003998 ORTHO05D005144 8.2e-26 120.9 102 60.8
Gorai.005G030200 Gossypium raimondii HOM05D003998 ORTHO05D005144 8.2e-26 120.9 102 63.7
Lj6A504G7 Lonicera japonica HOM05D003998 ORTHO05D005144 1.1e-25 120.6 81 82.7
CSS0005254 Camellia sinensis var. sinensis HOM05D003998 ORTHO05D005144 1.4e-25 120.2 102 58.8
Gohir.D02G024300 Gossypium hirsutum HOM05D003998 ORTHO05D005144 1.8e-25 119.8 102 62.7
Gohir.A02G020406 Gossypium hirsutum HOM05D003998 ORTHO05D005144 5.3e-25 118.2 102 63.7
GSVIVG01020986001 Vitis vinifera HOM05D003998 ORTHO05D005144 9.0e-25 117.5 104 56.7
Atru.chr4.1608 Acer truncatum HOM05D003998 ORTHO05D005144 1.5e-24 116.7 102 58.8
Prupe.1G159900 Prunus persica HOM05D003998 ORTHO05D005144 5.8e-24 114.8 102 56.9
Aqoxy2G03902 Aquilegia oxysepala HOM05D003998 ORTHO05D005144 7.6e-24 114.4 103 56.3
MD04G1013700 Malus domestica HOM05D003998 ORTHO05D005144 1.7e-23 113.2 102 56.9
FAN22G0959 Fragaria x ananassa HOM05D003998 ORTHO05D005144 3.8e-23 112.1 102 56.9
RcHm_v2.0_Chr4g0414141 Rosa chinensis HOM05D003998 ORTHO05D005144 4.9e-23 111.7 102 55.9
Manes.15G055500 Manihot esculenta HOM05D003998 ORTHO05D005144 6.5e-23 111.3 102 57.8
Ciclev10004378m.g Citrus clementina HOM05D003998 ORTHO05D005144 8.4e-23 110.9 102 57.8
PGR083G0268 Punica granatum HOM05D003998 ORTHO05D005144 8.4e-23 110.9 102 54.9
Haze_11635 Corylus avellana HOM05D003998 ORTHO05D005144 1.1e-22 110.5 102 56.9
FvH4_4g13510 Fragaria vesca HOM05D003998 ORTHO05D005144 1.4e-22 110.2 102 54.9
Lj6A500G11 Lonicera japonica HOM05D003998 ORTHO05D005144 1.4e-22 110.2 121 59.5
Cfa014947 Carpinus fangiana HOM05D003998 ORTHO05D005144 2.5e-22 109.4 102 55.9
PSO063G6533 Papaver somniferum HOM05D003998 ORTHO05D005144 2.5e-22 109.4 102 53.9
PSO017G6005 Papaver somniferum HOM05D003998 ORTHO05D005144 3.2e-22 109.0 102 53.9
TAR362G0495 Trochodendron aralioides HOM05D003998 ORTHO05D005144 3.2e-22 109.0 103 58.3
vmacro00453 Vaccinium macrocarpon HOM05D003998 ORTHO05D005144 4.2e-22 108.6 122 47.5
MBI11_g07440_MAGBIO Magnolia biondii HOM05D003998 ORTHO05D005144 1.6e-21 106.7 102 55.9
FAN12G4114 Fragaria x ananassa HOM05D003998 ORTHO05D005144 2.1e-21 106.3 102 53.9
Lsat_1_v5_gn_2_46500 Lactuca sativa HOM05D003998 ORTHO05D005144 3.5e-21 105.5 101 53.5
PGSC0003DMG400026420 Solanum tuberosum HOM05D003998 ORTHO05D005144 3.5e-21 105.5 102 52.9
CiPaw.01G118500 Carya illinoinensis HOM05D003998 ORTHO05D005144 6.0e-21 104.8 102 53.9
Rhsim09G0058600 Rhododendron simsii HOM05D003998 ORTHO05D005144 7.9e-21 104.4 114 49.1
ClCG05G003230 Citrullus lanatus HOM05D003998 ORTHO05D005144 1.0e-20 104.0 137 45.3
CANSAT78G0640 Cannabis sativa HOM05D003998 ORTHO05D005144 1.3e-20 103.6 137 46.0
Hund24398 Selenicereus undatus HOM05D003998 ORTHO05D005144 1.3e-20 103.6 103 53.4
Potri.001G317700 Populus trichocarpa HOM05D003998 ORTHO05D005144 1.8e-20 103.2 102 52.0
CsaV3_3G010860 Cucumis sativus L. HOM05D003998 ORTHO05D005144 2.3e-20 102.8 137 46.0
Eucgr.H02738 Eucalyptus grandis HOM05D003998 ORTHO05D005144 2.3e-20 102.8 102 52.9
Nitab4.5_0000401g0150 Nicotiana tabacum HOM05D003998 ORTHO05D005144 2.3e-20 102.8 102 52.9
Solyc09g092140.3 Solanum lycopersicum HOM05D003998 ORTHO05D005144 2.3e-20 102.8 102 52.0
Nitab4.5_0004231g0010 Nicotiana tabacum HOM05D003998 ORTHO05D005144 3.0e-20 102.4 99 52.5
Cc03_g08110 Coffea canephora HOM05D003998 ORTHO05D005144 3.9e-20 102.1 102 52.0
AUR62018577 Chenopodium quinoa HOM05D003998 ORTHO05D005144 5.1e-20 101.7 102 54.9
AUR62020839 Chenopodium quinoa HOM05D003998 ORTHO05D005144 5.1e-20 101.7 102 54.9
MELO3C006304.2 Cucumis melo HOM05D003998 ORTHO05D005144 5.1e-20 101.7 139 45.3
Sabra16G0201000 Salix brachista HOM05D003998 ORTHO05D005144 5.1e-20 101.7 106 50.0
Sc13g0000270 Simmondsia chinensis HOM05D003998 ORTHO05D005144 6.7e-20 101.3 102 52.9
Sed0015957 Sechium edule HOM05D003998 ORTHO05D005144 8.7e-20 100.9 99 52.5
Peaxi162Scf00047g00340 Petunia axillaris HOM05D003998 ORTHO05D005144 1.9e-19 99.8 100 53.0
Sopen09g035020 Solanum pennellii HOM05D003998 ORTHO05D005144 1.9e-19 99.8 102 50.0
HanXRQChr15g0488261 Helianthus annuus HOM05D003998 ORTHO05D005144 5.7e-19 98.2 103 51.5
Thhalv10016302m.g Eutrema salsugineum HOM05D003998 ORTHO05D005144 7.4e-19 97.8 103 53.4
CAN.G1648.3 Capsicum annuum HOM05D003998 ORTHO05D005144 1.3e-18 97.1 102 51.0
Lj6A449T9 Lonicera japonica HOM05D003998 ORTHO05D005144 1.3e-18 97.1 124 58.1
SGA_v2.0_scaffold128G34122 Striga asiatica HOM05D003998 ORTHO05D005144 1.6e-18 96.7 103 51.5
Aa31LG5G5250 Aethionema arabicum HOM05D003998 ORTHO05D005144 2.2e-18 96.3 102 53.9
Nn1g07939 Nelumbo nucifera HOM05D003998 ORTHO05D005144 2.8e-18 95.9 103 51.5
THA.LOC104826185 Tarenaya hassleriana HOM05D003998 ORTHO05D005144 3.7e-18 95.5 102 52.0
QL06p026540 Quercus lobata HOM05D003998 ORTHO05D005144 4.8e-18 95.1 153 41.8
EL10Ac3g07474 Beta vulgaris HOM05D003998 ORTHO05D005144 6.3e-18 94.7 102 50.0
A05p13770 Brassica napus HOM05D003998 ORTHO05D005144 1.1e-17 94.0 102 52.0
Sp4g14180 Schrenkiella parvula HOM05D003998 ORTHO05D005144 1.4e-17 93.6 102 52.9
BraA05t20313Z Brassica rapa HOM05D003998 ORTHO05D005144 1.8e-17 93.2 102 52.0
C04p18040 Brassica napus HOM05D003998 ORTHO05D005144 4.1e-17 92.0 102 51.0
BolC4t23351H Brassica oleracea HOM05D003998 ORTHO05D005144 4.1e-17 92.0 102 51.0
Lalb_Chr12g0205551 Lupinus albus HOM05D003998 ORTHO05D005144 4.1e-17 92.0 102 52.9
Ah.13g078040 Amaranthus hybridus HOM05D003998 ORTHO05D005144 5.3e-17 91.7 102 49.0
CARHR125430 Cardamine hirsuta HOM05D003998 ORTHO05D005144 1.2e-16 90.5 101 47.5
AT2G31740 Arabidopsis thaliana HOM05D003998 ORTHO05D005144 1.5e-16 90.1 102 47.1
AL4G27000 Arabidopsis lyrata HOM05D003998 ORTHO05D005144 2.0e-16 89.7 102 48.0
Carub.0004s1305 Capsella rubella HOM05D003998 ORTHO05D005144 3.4e-16 89.0 102 50.0
Glyma.08G111100 Glycine max HOM05D003998 ORTHO05D005144 3.4e-16 89.0 92 53.3
MD01G1010300 Malus domestica HOM05D003998 ORTHO05D005144 5.9e-16 88.2 84 53.6
Glyma.05G153400 Glycine max HOM05D003998 ORTHO05D005144 7.6e-16 87.8 92 53.3
Lj4g0023654 Lotus japonicus HOM05D003998 ORTHO05D005144 2.2e-15 86.3 94 48.9
Migut.N00415 Erythranthe guttata HOM05D003998 ORTHO05D005144 5.0e-15 85.1 103 45.6
Phvul.003G050000 Phaseolus vulgaris HOM05D003998 ORTHO05D005144 6.5e-15 84.7 122 45.1
ATR0605G199 Amborella trichopoda HOM05D003998 ORTHO05D005144 8.5e-15 84.3 103 44.7
Medtr8g085220 Medicago truncatula HOM05D003998 ORTHO05D005144 5.5e-14 81.6 123 43.1
Psat7g074560 Pisum sativum HOM05D003998 ORTHO05D005144 1.6e-13 80.1 123 43.1
VMungo0251G3649 Vigna mungo HOM05D003998 ORTHO05D005144 2.1e-13 79.7 122 44.3
arahy.Tifrunner.gnm1.ann1.DT4C3Q Arachis hypogaea HOM05D003998 ORTHO05D005144 3.6e-13 79.0 154 38.3
SalBow3G3008 Salvia bowleyana HOM05D003998 ORTHO05D005144 3.6e-13 79.0 103 43.7
Ca_17974_v3 Cicer arietinum L. HOM05D003998 ORTHO05D005144 4.6e-13 78.6 92 50.0
MSTRG.21978 Avicennia marina HOM05D003998 ORTHO05D005144 3.9e-12 75.5 103 42.7
SHI00910 Sapria himalayana HOM05D003998 ORTHO05D005144 5.1e-12 75.1 102 41.2
Migut.I00213 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.1e-11 73.9 101 41.6
TPR.G11885 Trifolium pratense HOM05D003998 ORTHO05D005144 3.3e-11 72.4 123 39.8
Migut.I00433 Erythranthe guttata HOM05D003998 ORTHO05D005144 7.4e-11 71.2 99 41.4
Migut.N00410 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.7e-10 70.1 103 39.8
Migut.N00409 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.2e-10 69.7 100 40.0
BcaB02g10415 Brassica carinata HOM05D003998 ORTHO05D005144 4.8e-10 68.6 99 41.4
Migut.I00431 Erythranthe guttata HOM05D003998 ORTHO05D005144 8.2e-10 67.8 91 40.7
Migut.I00432 Erythranthe guttata HOM05D003998 ORTHO05D005144 8.2e-10 67.8 96 41.7
ECA232G0954 Erigeron canadensis HOM05D003998 ORTHO05D005144 1.4e-09 67.0 152 33.6
Prupe.1G159800 Prunus persica HOM05D003998 ORTHO05D005144 1.4e-09 67.0 84 45.2
Duzib151G0324 Durio zibethinus HOM05D003998 ORTHO05D005144 4.1e-09 65.5 42 78.6
Zm00001eb420660 Zea mays HOM05D003998 ORTHO05D005144 4.1e-09 65.5 99 41.4
Os04g0379300 Oryza sativa ssp. japonica HOM05D003998 ORTHO05D005144 5.3e-09 65.1 103 38.8
arahy.Tifrunner.gnm1.ann1.7DTN51 Arachis hypogaea HOM05D003998 ORTHO05D005144 1.5e-08 63.5 143 36.4
unitig_22.g6826 Utricularia gibba HOM05D003998 ORTHO05D005144 1.5e-08 63.5 153 35.3
SEGI_17124 Sequoiadendron giganteum HOM05D003998 ORTHO05D005144 2.0e-08 63.2 103 36.9
Migut.N00413 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.4e-08 62.4 103 37.9
Migut.N00411 Erythranthe guttata HOM05D003998 ORTHO05D005144 4.5e-08 62.0 101 39.6
Migut.N00412 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.7e-07 60.1 109 38.5
Migut.B00567 Erythranthe guttata HOM05D003998 ORTHO05D005144 6.5e-07 58.2 134 33.6
Migut.N00408 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.5e-06 56.2 103 39.8
Migut.F01776 Erythranthe guttata HOM05D003998 ORTHO05D005144 4.2e-06 55.5 105 36.2
Migut.I00434 Erythranthe guttata HOM05D003998 ORTHO05D005144 4.2e-06 55.5 101 38.6


User provided reference genes

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