Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A495G25 Lonicera japonica HOM05D003998 ORTHO05D021041 2.0e-144 515.8 265 100.0
Lj6C507G7 Lonicera japonica HOM05D003998 ORTHO05D005144 1.1e-94 350.5 416 54.8
Lj6A454G39 Lonicera japonica HOM05D003998 ORTHO05D005144 5.4e-81 305.1 413 49.6
Lj6C491G2 Lonicera japonica HOM05D003998 ORTHO05D005144 1.2e-80 303.9 413 49.4
Lj6A508G27 Lonicera japonica HOM05D003998 ORTHO05D005144 1.3e-74 283.9 249 66.7
Lj6A453G8 Lonicera japonica HOM05D003998 ORTHO05D005144 5.6e-62 241.9 133 91.0
Actinidia35854 Actinidia chinensis HOM05D003998 ORTHO05D005144 2.8e-53 213.0 409 38.6
CSS0005254 Camellia sinensis var. sinensis HOM05D003998 ORTHO05D005144 4.8e-53 212.2 409 38.4
DCAR_026634 Daucus carota HOM05D003998 ORTHO05D005144 2.4e-52 209.9 389 38.8
MD01G1010300 Malus domestica HOM05D003998 ORTHO05D005144 1.6e-48 197.2 344 39.0
Haze_11635 Corylus avellana HOM05D003998 ORTHO05D005144 3.3e-46 189.5 336 37.8
Duzib151G0324 Durio zibethinus HOM05D003998 ORTHO05D005144 3.3e-46 189.5 327 41.3
vmacro00453 Vaccinium macrocarpon HOM05D003998 ORTHO05D005144 3.3e-46 189.5 406 36.9
Dinv38203 Davidia involucrata HOM05D003998 ORTHO05D005144 7.3e-46 188.3 304 42.4
Rhsim09G0058600 Rhododendron simsii HOM05D003998 ORTHO05D005144 9.6e-46 188.0 447 34.9
MD04G1013700 Malus domestica HOM05D003998 ORTHO05D005144 3.6e-45 186.0 368 35.9
FAN22G0959 Fragaria x ananassa HOM05D003998 ORTHO05D005144 1.8e-44 183.7 369 36.3
FAN12G4114 Fragaria x ananassa HOM05D003998 ORTHO05D005144 2.4e-44 183.3 369 36.3
CiPaw.01G118500 Carya illinoinensis HOM05D003998 ORTHO05D005144 2.0e-43 180.3 404 34.4
FvH4_4g13510 Fragaria vesca HOM05D003998 ORTHO05D005144 2.0e-43 180.3 369 36.0
TWI53G1682 Tripterygium wilfordii HOM05D003998 ORTHO05D005144 2.6e-43 179.9 403 35.0
Cfa014947 Carpinus fangiana HOM05D003998 ORTHO05D005144 3.4e-43 179.5 364 35.2
RcHm_v2.0_Chr4g0414141 Rosa chinensis HOM05D003998 ORTHO05D005144 3.4e-43 179.5 369 36.0
CANSAT78G0640 Cannabis sativa HOM05D003998 ORTHO05D005144 4.5e-43 179.1 408 35.0
Ciclev10004378m.g Citrus clementina HOM05D003998 ORTHO05D005144 4.5e-43 179.1 371 35.3
PSO063G6533 Papaver somniferum HOM05D003998 ORTHO05D005144 9.9e-43 177.9 405 33.6
ECA232G0954 Erigeron canadensis HOM05D003998 ORTHO05D005144 1.3e-42 177.6 375 34.7
GSVIVG01020986001 Vitis vinifera HOM05D003998 ORTHO05D005144 1.3e-42 177.6 366 37.7
Prupe.1G159900 Prunus persica HOM05D003998 ORTHO05D005144 1.7e-42 177.2 253 41.9
Atru.chr4.1608 Acer truncatum HOM05D003998 ORTHO05D005144 2.2e-42 176.8 409 34.5
Potri.001G317700 Populus trichocarpa HOM05D003998 ORTHO05D005144 3.8e-42 176.0 339 36.3
Manes.15G055500 Manihot esculenta HOM05D003998 ORTHO05D005144 1.9e-41 173.7 409 35.0
Lj4g0023654 Lotus japonicus HOM05D003998 ORTHO05D005144 9.3e-41 171.4 407 32.9
Nitab4.5_0004231g0010 Nicotiana tabacum HOM05D003998 ORTHO05D005144 9.3e-41 171.4 393 33.1
PSO017G6005 Papaver somniferum HOM05D003998 ORTHO05D005144 2.7e-40 169.9 405 33.1
Cc03_g08110 Coffea canephora HOM05D003998 ORTHO05D005144 7.9e-40 168.3 408 33.1
Solyc09g092140.3 Solanum lycopersicum HOM05D003998 ORTHO05D005144 7.9e-40 168.3 408 32.4
PGSC0003DMG400026420 Solanum tuberosum HOM05D003998 ORTHO05D005144 7.9e-40 168.3 395 33.4
MBI11_g07440_MAGBIO Magnolia biondii HOM05D003998 ORTHO05D005144 1.3e-39 167.5 410 32.9
Sopen09g035020 Solanum pennellii HOM05D003998 ORTHO05D005144 1.8e-39 167.2 408 32.4
TAR362G0495 Trochodendron aralioides HOM05D003998 ORTHO05D005144 1.8e-39 167.2 238 45.4
Lsat_1_v5_gn_2_46500 Lactuca sativa HOM05D003998 ORTHO05D005144 2.3e-39 166.8 408 34.1
Sed0015957 Sechium edule HOM05D003998 ORTHO05D005144 2.3e-39 166.8 370 34.6
Lalb_Chr12g0205551 Lupinus albus HOM05D003998 ORTHO05D005144 6.7e-39 165.2 362 34.3
Nitab4.5_0000401g0150 Nicotiana tabacum HOM05D003998 ORTHO05D005144 1.5e-38 164.1 405 31.9
Sc13g0000270 Simmondsia chinensis HOM05D003998 ORTHO05D005144 1.9e-38 163.7 274 40.5
arahy.Tifrunner.gnm1.ann1.7DTN51 Arachis hypogaea HOM05D003998 ORTHO05D005144 3.3e-38 162.9 383 33.7
MELO3C006304.2 Cucumis melo HOM05D003998 ORTHO05D005144 9.6e-38 161.4 403 32.8
CsaV3_3G010860 Cucumis sativus L. HOM05D003998 ORTHO05D005144 1.3e-37 161.0 403 32.5
Aqoxy2G03902 Aquilegia oxysepala HOM05D003998 ORTHO05D005144 1.6e-37 160.6 406 33.3
Glyma.05G153400 Glycine max HOM05D003998 ORTHO05D005144 3.7e-37 159.5 398 31.9
CAN.G1648.3 Capsicum annuum HOM05D003998 ORTHO05D005144 4.8e-37 159.1 395 32.2
arahy.Tifrunner.gnm1.ann1.DT4C3Q Arachis hypogaea HOM05D003998 ORTHO05D005144 6.2e-37 158.7 381 33.1
Peaxi162Scf00047g00340 Petunia axillaris HOM05D003998 ORTHO05D005144 8.1e-37 158.3 293 37.9
Glyma.08G111100 Glycine max HOM05D003998 ORTHO05D005144 1.1e-36 157.9 363 32.5
Medtr8g085220 Medicago truncatula HOM05D003998 ORTHO05D005144 2.4e-36 156.8 366 33.6
COL.COLO4_20194 Corchorus olitorius HOM05D003998 ORTHO05D005144 3.1e-36 156.4 408 34.1
Psat7g074560 Pisum sativum HOM05D003998 ORTHO05D005144 4.0e-36 156.0 365 32.6
Ca_17974_v3 Cicer arietinum L. HOM05D003998 ORTHO05D005144 5.3e-36 155.6 366 33.9
AUR62018577 Chenopodium quinoa HOM05D003998 ORTHO05D005144 9.0e-36 154.8 412 32.3
PGR083G0268 Punica granatum HOM05D003998 ORTHO05D005144 9.0e-36 154.8 403 32.3
Lj6A449T11 Lonicera japonica HOM05D003998 ORTHO05D021041 2.0e-35 153.7 92 90.2
unitig_22.g6826 Utricularia gibba HOM05D003998 ORTHO05D005144 2.0e-35 153.7 363 33.3
Gohir.A02G020406 Gossypium hirsutum HOM05D003998 ORTHO05D005144 3.4e-35 152.9 402 31.8
Thecc.04G198600 Theobroma cacao HOM05D003998 ORTHO05D005144 4.5e-35 152.5 360 33.9
HanXRQChr15g0488261 Helianthus annuus HOM05D003998 ORTHO05D005144 1.3e-34 151.0 333 34.8
Sabra16G0201000 Salix brachista HOM05D003998 ORTHO05D005144 1.7e-34 150.6 412 32.0
Eucgr.H02738 Eucalyptus grandis HOM05D003998 ORTHO05D005144 2.2e-34 150.2 409 30.8
Gorai.005G030200 Gossypium raimondii HOM05D003998 ORTHO05D005144 3.8e-34 149.4 408 31.9
SGA_v2.0_scaffold128G34122 Striga asiatica HOM05D003998 ORTHO05D005144 3.8e-34 149.4 414 30.2
Ah.13g078040 Amaranthus hybridus HOM05D003998 ORTHO05D005144 4.9e-34 149.1 412 31.6
Gohir.D02G024300 Gossypium hirsutum HOM05D003998 ORTHO05D005144 4.9e-34 149.1 408 32.1
Phvul.003G050000 Phaseolus vulgaris HOM05D003998 ORTHO05D005144 1.1e-33 147.9 365 31.5
AUR62020839 Chenopodium quinoa HOM05D003998 ORTHO05D005144 5.5e-33 145.6 412 31.6
AL4G27000 Arabidopsis lyrata HOM05D003998 ORTHO05D005144 9.3e-33 144.8 408 29.7
BraA05t20313Z Brassica rapa HOM05D003998 ORTHO05D005144 9.3e-33 144.8 402 31.3
A05p13770 Brassica napus HOM05D003998 ORTHO05D005144 1.2e-32 144.4 402 31.1
C04p18040 Brassica napus HOM05D003998 ORTHO05D005144 1.2e-32 144.4 407 31.0
BolC4t23351H Brassica oleracea HOM05D003998 ORTHO05D005144 1.2e-32 144.4 407 31.0
Thhalv10016302m.g Eutrema salsugineum HOM05D003998 ORTHO05D005144 1.6e-32 144.1 408 29.7
VMungo0251G3649 Vigna mungo HOM05D003998 ORTHO05D005144 2.1e-32 143.7 406 30.0
Aa31LG5G5250 Aethionema arabicum HOM05D003998 ORTHO05D005144 2.7e-32 143.3 414 30.9
Lj6A498G14 Lonicera japonica HOM05D003998 ORTHO05D005144 6.0e-32 142.1 154 54.5
Carub.0004s1305 Capsella rubella HOM05D003998 ORTHO05D005144 7.9e-32 141.7 398 30.2
BcaB02g10415 Brassica carinata HOM05D003998 ORTHO05D005144 1.1e-30 137.9 387 30.2
AT2G31740 Arabidopsis thaliana HOM05D003998 ORTHO05D005144 1.5e-30 137.5 408 29.2
ClCG05G003230 Citrullus lanatus HOM05D003998 ORTHO05D005144 1.5e-30 137.5 230 38.3
EL10Ac3g07474 Beta vulgaris HOM05D003998 ORTHO05D005144 1.6e-29 134.0 246 38.2
Sp4g14180 Schrenkiella parvula HOM05D003998 ORTHO05D005144 4.8e-29 132.5 408 28.7
TPR.G11885 Trifolium pratense HOM05D003998 ORTHO05D005144 1.1e-28 131.3 367 31.3
ATR0605G199 Amborella trichopoda HOM05D003998 ORTHO05D005144 1.4e-28 131.0 411 30.7
THA.LOC104826185 Tarenaya hassleriana HOM05D003998 ORTHO05D005144 1.4e-28 131.0 399 29.1
CARHR125430 Cardamine hirsuta HOM05D003998 ORTHO05D005144 2.4e-28 130.2 408 28.2
Lj6A518T3 Lonicera japonica HOM05D003998 ORTHO05D005144 2.0e-27 127.1 159 51.6
Os04g0379300 Oryza sativa ssp. japonica HOM05D003998 ORTHO05D005144 2.0e-27 127.1 356 28.9
MSTRG.21978 Avicennia marina HOM05D003998 ORTHO05D005144 7.6e-27 125.2 144 49.3
SHI00910 Sapria himalayana HOM05D003998 ORTHO05D005144 2.5e-25 120.2 228 37.7
Zm00001eb420660 Zea mays HOM05D003998 ORTHO05D005144 1.2e-24 117.9 335 29.3
Hund24398 Selenicereus undatus HOM05D003998 ORTHO05D005144 4.6e-24 115.9 415 28.7
Migut.N00415 Erythranthe guttata HOM05D003998 ORTHO05D005144 8.7e-23 111.7 162 42.6
SalBow3G3008 Salvia bowleyana HOM05D003998 ORTHO05D005144 8.7e-23 111.7 338 28.4
QL06p026540 Quercus lobata HOM05D003998 ORTHO05D005144 1.4e-20 104.4 286 31.1
HPP92_024546 Vanilla planifolia HOM05D003998 ORTHO05D005144 7.7e-19 98.6 180 38.3
Migut.I00433 Erythranthe guttata HOM05D003998 ORTHO05D005144 6.5e-18 95.5 405 25.2
Migut.I00432 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.2e-16 91.3 252 29.8
MBI08_g28973_MAGBIO Magnolia biondii HOM05D000059 ORTHO05D005144 2.7e-16 90.1 95 52.6
Migut.I00213 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.6e-16 89.7 369 26.6
MBI08_g34511_MAGBIO Magnolia biondii HOM05D000059 ORTHO05D005144 3.6e-16 89.7 99 49.5
DCAR_016239 Daucus carota HOM05D003998 ORTHO05D003368 5.1e-15 85.9 101 45.5
Lj6A492T19 Lonicera japonica HOM05D003998 ORTHO05D005144 8.8e-15 85.1 47 87.2
Lj6A500G11 Lonicera japonica HOM05D003998 ORTHO05D005144 3.3e-14 83.2 88 55.7
Migut.I00434 Erythranthe guttata HOM05D003998 ORTHO05D005144 5.7e-14 82.4 161 36.0
Lj6A500T11 Lonicera japonica HOM05D003998 ORTHO05D005144 1.3e-13 81.3 51 78.4
Cpa.g.sc83.24 Carica papaya HOM05D003998 ORTHO05D021041 2.2e-13 80.5 87 51.7
Migut.N00409 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.2e-13 80.5 354 26.8
Migut.N00411 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.2e-13 80.5 372 25.5
Migut.N00413 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.7e-13 79.7 360 24.7
Lj6A449T9 Lonicera japonica HOM05D003998 ORTHO05D005144 6.3e-13 79.0 88 54.5
Lj6A504G7 Lonicera japonica HOM05D003998 ORTHO05D005144 8.2e-13 78.6 160 37.5
Migut.N00412 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.1e-12 78.2 276 28.6
QL06p026526 Quercus lobata HOM05D003998 ORTHO05D005144 1.8e-12 77.4 167 35.9
Lj6A449T10 Lonicera japonica HOM05D003998 ORTHO05D005144 2.4e-12 77.0 47 78.7
Migut.N00410 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.2e-11 74.7 388 25.3
Nn1g07939 Nelumbo nucifera HOM05D003998 ORTHO05D005144 2.0e-11 73.9 169 33.1
Atru.chr3.3435 Acer truncatum HOM05D000005 ORTHO05D000012 3.4e-11 73.2 101 43.6
Lj6A502T9 Lonicera japonica HOM05D003998 ORTHO05D005144 3.4e-11 73.2 47 74.5
Migut.I00431 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.0e-10 71.6 170 35.9
Migut.N00414 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.8e-10 69.7 153 33.3
SEGI_17124 Sequoiadendron giganteum HOM05D003998 ORTHO05D005144 5.0e-10 69.3 216 27.8
Migut.N00888 Erythranthe guttata HOM05D003998 ORTHO05D005144 6.5e-10 68.9 207 30.9
AagrBONN_evm.TU.Sc2ySwM_117.2891 Anthoceros agrestis HOM05D003998 ORTHO05D005144 1.4e-09 67.8 214 29.0
Atru.chr4.1609 Acer truncatum HOM05D003998 ORTHO05D021041 1.9e-09 67.4 57 54.4
Nn1g07941 Nelumbo nucifera HOM05D003998 ORTHO05D005144 1.0e-07 61.6 32 87.5
Migut.N00785 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.4e-07 61.2 141 31.9
Cpa.g.sc83.23 Carica papaya HOM05D003998 ORTHO05D005144 1.8e-07 60.8 32 81.2
Migut.F01777 Erythranthe guttata HOM05D003998 ORTHO05D005144 6.7e-07 58.9 87 41.4
HPP92_024545 Vanilla planifolia HOM05D003998 ORTHO05D005144 6.7e-07 58.9 48 54.2
Mapoly0151s0004 Marchantia polymorpha HOM05D003998 ORTHO05D005144 2.0e-06 57.4 145 31.7
Migut.F01720 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.3e-06 56.6 89 40.4
Migut.C00311 Erythranthe guttata HOM05D003998 ORTHO05D005144 4.4e-06 56.2 144 34.0
Migut.F01776 Erythranthe guttata HOM05D003998 ORTHO05D005144 5.7e-06 55.8 82 41.5


User provided reference genes

Program Settings