Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A449T9 Lonicera japonica HOM05D003998 ORTHO05D005144 4.8e-61 237.7 121 100.0
Lj6C491G2 Lonicera japonica HOM05D003998 ORTHO05D005144 2.8e-53 211.8 118 91.5
Lj6A498G14 Lonicera japonica HOM05D003998 ORTHO05D005144 9.1e-52 206.8 117 91.5
Lj6A454G39 Lonicera japonica HOM05D003998 ORTHO05D005144 2.0e-51 205.7 118 89.8
Lj6A518T3 Lonicera japonica HOM05D003998 ORTHO05D005144 1.7e-50 202.6 117 89.7
Lj6A500G11 Lonicera japonica HOM05D003998 ORTHO05D005144 5.0e-50 201.1 117 88.9
Lj6C507G7 Lonicera japonica HOM05D003998 ORTHO05D005144 2.3e-47 192.2 118 85.6
Lj6A508G27 Lonicera japonica HOM05D003998 ORTHO05D005144 1.5e-41 172.9 117 82.9
Dinv38203 Davidia involucrata HOM05D003998 ORTHO05D005144 1.5e-38 162.9 117 66.7
Actinidia35854 Actinidia chinensis HOM05D003998 ORTHO05D005144 1.5e-33 146.4 118 61.0
DCAR_026634 Daucus carota HOM05D003998 ORTHO05D005144 1.5e-33 146.4 118 65.3
TWI53G1682 Tripterygium wilfordii HOM05D003998 ORTHO05D005144 4.3e-33 144.8 118 61.9
COL.COLO4_20194 Corchorus olitorius HOM05D003998 ORTHO05D005144 7.3e-33 144.1 118 61.9
Thecc.04G198600 Theobroma cacao HOM05D003998 ORTHO05D005144 2.8e-32 142.1 118 60.2
TAR362G0495 Trochodendron aralioides HOM05D003998 ORTHO05D005144 2.8e-32 142.1 117 63.2
CSS0005254 Camellia sinensis var. sinensis HOM05D003998 ORTHO05D005144 6.1e-32 141.0 118 56.8
Gorai.005G030200 Gossypium raimondii HOM05D003998 ORTHO05D005144 1.0e-31 140.2 118 59.3
Atru.chr4.1608 Acer truncatum HOM05D003998 ORTHO05D005144 2.3e-31 139.0 118 56.8
Cc03_g08110 Coffea canephora HOM05D003998 ORTHO05D005144 2.3e-31 139.0 118 58.5
Gohir.A02G020406 Gossypium hirsutum HOM05D003998 ORTHO05D005144 3.0e-31 138.7 118 60.2
Gohir.D02G024300 Gossypium hirsutum HOM05D003998 ORTHO05D005144 3.0e-31 138.7 118 58.5
vmacro00453 Vaccinium macrocarpon HOM05D003998 ORTHO05D005144 4.0e-31 138.3 118 56.8
Rhsim09G0058600 Rhododendron simsii HOM05D003998 ORTHO05D005144 1.5e-30 136.3 130 54.6
Nn1g07939 Nelumbo nucifera HOM05D003998 ORTHO05D005144 2.6e-30 135.6 118 57.6
PSO017G6005 Papaver somniferum HOM05D003998 ORTHO05D005144 2.6e-30 135.6 117 56.4
Lsat_1_v5_gn_2_46500 Lactuca sativa HOM05D003998 ORTHO05D005144 3.4e-30 135.2 118 57.6
CANSAT78G0640 Cannabis sativa HOM05D003998 ORTHO05D005144 5.7e-30 134.4 118 57.6
Sc13g0000270 Simmondsia chinensis HOM05D003998 ORTHO05D005144 9.8e-30 133.7 118 56.8
ECA232G0954 Erigeron canadensis HOM05D003998 ORTHO05D005144 2.9e-29 132.1 109 59.6
PSO063G6533 Papaver somniferum HOM05D003998 ORTHO05D005144 3.7e-29 131.7 117 54.7
MBI11_g07440_MAGBIO Magnolia biondii HOM05D003998 ORTHO05D005144 1.8e-28 129.4 118 56.8
SGA_v2.0_scaffold128G34122 Striga asiatica HOM05D003998 ORTHO05D005144 1.8e-28 129.4 117 55.6
Manes.15G055500 Manihot esculenta HOM05D003998 ORTHO05D005144 2.4e-28 129.0 118 56.8
QL06p026540 Quercus lobata HOM05D003998 ORTHO05D005144 1.2e-27 126.7 118 53.4
MELO3C006304.2 Cucumis melo HOM05D003998 ORTHO05D005144 2.7e-27 125.6 118 54.2
MD04G1013700 Malus domestica HOM05D003998 ORTHO05D005144 2.7e-27 125.6 118 55.1
Ciclev10004378m.g Citrus clementina HOM05D003998 ORTHO05D005144 3.5e-27 125.2 118 53.4
Potri.001G317700 Populus trichocarpa HOM05D003998 ORTHO05D005144 3.5e-27 125.2 118 51.7
HanXRQChr15g0488261 Helianthus annuus HOM05D003998 ORTHO05D005144 4.6e-27 124.8 118 55.1
Peaxi162Scf00047g00340 Petunia axillaris HOM05D003998 ORTHO05D005144 4.6e-27 124.8 118 52.5
Aqoxy2G03902 Aquilegia oxysepala HOM05D003998 ORTHO05D005144 7.8e-27 124.0 118 54.2
CiPaw.01G118500 Carya illinoinensis HOM05D003998 ORTHO05D005144 7.8e-27 124.0 118 54.2
CsaV3_3G010860 Cucumis sativus L. HOM05D003998 ORTHO05D005144 7.8e-27 124.0 118 53.4
Prupe.1G159900 Prunus persica HOM05D003998 ORTHO05D005144 7.8e-27 124.0 118 53.4
ClCG05G003230 Citrullus lanatus HOM05D003998 ORTHO05D005144 1.0e-26 123.6 118 52.5
THA.LOC104826185 Tarenaya hassleriana HOM05D003998 ORTHO05D005144 1.0e-26 123.6 118 55.1
Hund24398 Selenicereus undatus HOM05D003998 ORTHO05D005144 3.0e-26 122.1 118 51.7
PGR083G0268 Punica granatum HOM05D003998 ORTHO05D005144 8.6e-26 120.6 119 52.9
Duzib151G0324 Durio zibethinus HOM05D003998 ORTHO05D005144 1.9e-25 119.4 89 68.5
Lj6A504G7 Lonicera japonica HOM05D003998 ORTHO05D005144 2.5e-25 119.0 72 86.1
Sabra16G0201000 Salix brachista HOM05D003998 ORTHO05D005144 3.3e-25 118.6 122 50.0
Sed0015957 Sechium edule HOM05D003998 ORTHO05D005144 3.3e-25 118.6 118 51.7
Cfa014947 Carpinus fangiana HOM05D003998 ORTHO05D005144 4.3e-25 118.2 118 52.5
AUR62018577 Chenopodium quinoa HOM05D003998 ORTHO05D005144 4.3e-25 118.2 120 53.3
AUR62020839 Chenopodium quinoa HOM05D003998 ORTHO05D005144 4.3e-25 118.2 120 53.3
Haze_11635 Corylus avellana HOM05D003998 ORTHO05D005144 5.6e-25 117.9 117 53.0
RcHm_v2.0_Chr4g0414141 Rosa chinensis HOM05D003998 ORTHO05D005144 7.3e-25 117.5 118 50.8
Aa31LG5G5250 Aethionema arabicum HOM05D003998 ORTHO05D005144 1.2e-24 116.7 118 52.5
FAN22G0959 Fragaria x ananassa HOM05D003998 ORTHO05D005144 1.6e-24 116.3 118 50.8
MSTRG.21978 Avicennia marina HOM05D003998 ORTHO05D005144 2.1e-24 115.9 117 52.1
Thhalv10016302m.g Eutrema salsugineum HOM05D003998 ORTHO05D005144 2.8e-24 115.5 118 52.5
Lalb_Chr12g0205551 Lupinus albus HOM05D003998 ORTHO05D005144 2.8e-24 115.5 118 52.5
Oeu025025.1 Olea europaea HOM05D003998 ORTHO05D005144 2.8e-24 115.5 144 45.1
FvH4_4g13510 Fragaria vesca HOM05D003998 ORTHO05D005144 3.6e-24 115.2 118 50.0
FAN12G4114 Fragaria x ananassa HOM05D003998 ORTHO05D005144 3.6e-24 115.2 118 50.0
PGSC0003DMG400026420 Solanum tuberosum HOM05D003998 ORTHO05D005144 4.7e-24 114.8 118 48.3
ATR0605G199 Amborella trichopoda HOM05D003998 ORTHO05D005144 6.2e-24 114.4 120 47.5
Solyc09g092140.3 Solanum lycopersicum HOM05D003998 ORTHO05D005144 8.0e-24 114.0 118 47.5
Eucgr.H02738 Eucalyptus grandis HOM05D003998 ORTHO05D005144 4.0e-23 111.7 118 47.5
EL10Ac3g07474 Beta vulgaris HOM05D003998 ORTHO05D005144 5.2e-23 111.3 120 48.3
Nitab4.5_0000401g0150 Nicotiana tabacum HOM05D003998 ORTHO05D005144 5.2e-23 111.3 118 48.3
AT2G31740 Arabidopsis thaliana HOM05D003998 ORTHO05D005144 8.9e-23 110.5 118 47.5
arahy.Tifrunner.gnm1.ann1.7DTN51 Arachis hypogaea HOM05D003998 ORTHO05D005144 8.9e-23 110.5 118 50.0
arahy.Tifrunner.gnm1.ann1.DT4C3Q Arachis hypogaea HOM05D003998 ORTHO05D005144 8.9e-23 110.5 118 50.0
Glyma.05G153400 Glycine max HOM05D003998 ORTHO05D005144 1.2e-22 110.2 118 49.2
CAN.G1648.3 Capsicum annuum HOM05D003998 ORTHO05D005144 1.5e-22 109.8 118 46.6
Sopen09g035020 Solanum pennellii HOM05D003998 ORTHO05D005144 1.5e-22 109.8 118 45.8
Sp4g14180 Schrenkiella parvula HOM05D003998 ORTHO05D005144 2.0e-22 109.4 118 50.0
AL4G27000 Arabidopsis lyrata HOM05D003998 ORTHO05D005144 2.6e-22 109.0 118 47.5
Ca_17974_v3 Cicer arietinum L. HOM05D003998 ORTHO05D005144 3.4e-22 108.6 117 51.3
Psat7g074560 Pisum sativum HOM05D003998 ORTHO05D005144 3.4e-22 108.6 117 49.6
Ah.13g078040 Amaranthus hybridus HOM05D003998 ORTHO05D005144 4.4e-22 108.2 119 49.6
A05p13770 Brassica napus HOM05D003998 ORTHO05D005144 5.8e-22 107.8 118 48.3
Carub.0004s1305 Capsella rubella HOM05D003998 ORTHO05D005144 5.8e-22 107.8 118 49.2
C04p18040 Brassica napus HOM05D003998 ORTHO05D005144 9.8e-22 107.1 118 48.3
BolC4t23351H Brassica oleracea HOM05D003998 ORTHO05D005144 9.8e-22 107.1 118 48.3
Glyma.08G111100 Glycine max HOM05D003998 ORTHO05D005144 9.8e-22 107.1 118 48.3
Lj4g0023654 Lotus japonicus HOM05D003998 ORTHO05D005144 9.8e-22 107.1 120 47.5
CARHR125430 Cardamine hirsuta HOM05D003998 ORTHO05D005144 3.7e-21 105.1 118 47.5
BraA05t20313Z Brassica rapa HOM05D003998 ORTHO05D005144 4.9e-21 104.8 118 47.5
VMungo0251G3649 Vigna mungo HOM05D003998 ORTHO05D005144 6.4e-21 104.4 117 47.0
Nitab4.5_0004231g0010 Nicotiana tabacum HOM05D003998 ORTHO05D005144 1.9e-20 102.8 118 47.5
Phvul.003G050000 Phaseolus vulgaris HOM05D003998 ORTHO05D005144 1.9e-20 102.8 117 45.3
Lj6A496T18 Lonicera japonica HOM05D003998 ORTHO05D005144 3.2e-20 102.1 124 58.1
SalBow3G3008 Salvia bowleyana HOM05D003998 ORTHO05D005144 4.1e-20 101.7 117 42.7
TPR.G11885 Trifolium pratense HOM05D003998 ORTHO05D005144 4.1e-20 101.7 117 46.2
Medtr8g085220 Medicago truncatula HOM05D003998 ORTHO05D005144 5.4e-20 101.3 117 45.3
Migut.N00415 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.2e-19 100.1 125 44.8
SEGI_17124 Sequoiadendron giganteum HOM05D003998 ORTHO05D005144 6.0e-19 97.8 117 42.7
Os04g0379300 Oryza sativa ssp. japonica HOM05D003998 ORTHO05D005144 5.0e-18 94.7 117 43.6
unitig_22.g6826 Utricularia gibba HOM05D003998 ORTHO05D005144 8.6e-18 94.0 117 42.7
Zm00001eb420660 Zea mays HOM05D003998 ORTHO05D005144 1.1e-17 93.6 118 44.9
Migut.I00432 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.1e-16 89.4 116 44.0
SHI00910 Sapria himalayana HOM05D003998 ORTHO05D005144 1.8e-15 86.3 117 43.6
GSVIVG01020986001 Vitis vinifera HOM05D003998 ORTHO05D005144 2.3e-15 85.9 69 56.5
Lj6A453G8 Lonicera japonica HOM05D003998 ORTHO05D005144 4.0e-15 85.1 88 56.8
BcaB02g10415 Brassica carinata HOM05D003998 ORTHO05D005144 1.2e-14 83.6 118 42.4
Migut.N00408 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.0e-14 82.8 121 43.8
Migut.I00433 Erythranthe guttata HOM05D003998 ORTHO05D005144 4.4e-14 81.6 119 37.8
Migut.I00213 Erythranthe guttata HOM05D003998 ORTHO05D005144 7.5e-14 80.9 117 41.9
Migut.N00409 Erythranthe guttata HOM05D003998 ORTHO05D005144 9.8e-14 80.5 103 42.7
Migut.N00410 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.7e-13 79.7 115 37.4
Lj6A495G25 Lonicera japonica HOM05D003998 ORTHO05D021041 2.9e-13 79.0 88 54.5
Migut.N00785 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.7e-13 78.6 76 48.7
MD01G1010300 Malus domestica HOM05D003998 ORTHO05D005144 6.4e-13 77.8 118 39.8
Migut.I00431 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.2e-12 75.5 116 38.8
Migut.F01777 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.6e-11 73.2 120 35.8
Migut.N00411 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.1e-11 72.8 99 41.4
Migut.F01532 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.5e-11 72.0 119 33.6
Migut.H01109 Erythranthe guttata HOM05D003998 ORTHO05D005144 6.0e-11 71.2 118 35.6
Migut.F01720 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.0e-10 70.5 118 34.7
Migut.N00888 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.0e-10 70.5 120 34.2
Migut.F01776 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.7e-10 69.7 90 41.1
Migut.B00567 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.9e-10 68.6 106 33.0
Migut.N00413 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.9e-10 68.6 99 39.4
Migut.I00434 Erythranthe guttata HOM05D003998 ORTHO05D005144 6.6e-10 67.8 117 39.3
Migut.O00105 Erythranthe guttata HOM05D003998 ORTHO05D005144 8.6e-10 67.4 118 39.0
PSO648G0067 Papaver somniferum HOM05D000031 ORTHO05D000030 5.8e-06 54.7 43 62.8


User provided reference genes

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