Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A449T11 Lonicera japonica HOM05D003998 ORTHO05D021041 1.0e-85 320.1 171 100.0
Lj6A454G39 Lonicera japonica HOM05D003998 ORTHO05D005144 4.8e-38 161.8 108 84.3
Lj6C491G2 Lonicera japonica HOM05D003998 ORTHO05D005144 8.1e-38 161.0 108 84.3
Lj6A508G27 Lonicera japonica HOM05D003998 ORTHO05D005144 5.3e-37 158.3 93 92.5
Lj6A495G25 Lonicera japonica HOM05D003998 ORTHO05D021041 4.9e-35 151.8 92 90.2
Lj6C507G7 Lonicera japonica HOM05D003998 ORTHO05D005144 3.0e-32 142.5 92 87.0
CSS0005254 Camellia sinensis var. sinensis HOM05D003998 ORTHO05D005144 1.3e-24 117.1 112 59.8
Dinv38203 Davidia involucrata HOM05D003998 ORTHO05D005144 2.8e-22 109.4 111 58.6
Actinidia35854 Actinidia chinensis HOM05D003998 ORTHO05D005144 3.7e-22 109.0 110 57.3
DCAR_026634 Daucus carota HOM05D003998 ORTHO05D005144 1.1e-21 107.5 98 61.2
Peaxi162Scf00047g00340 Petunia axillaris HOM05D003998 ORTHO05D005144 2.6e-20 102.8 108 56.5
vmacro00453 Vaccinium macrocarpon HOM05D003998 ORTHO05D005144 4.9e-19 98.6 134 53.0
Nitab4.5_0004231g0010 Nicotiana tabacum HOM05D003998 ORTHO05D005144 4.2e-18 95.5 108 51.9
Nitab4.5_0000401g0150 Nicotiana tabacum HOM05D003998 ORTHO05D005144 9.3e-18 94.4 108 52.8
Sopen09g035020 Solanum pennellii HOM05D003998 ORTHO05D005144 1.6e-17 93.6 108 50.0
TAR362G0495 Trochodendron aralioides HOM05D003998 ORTHO05D005144 1.6e-17 93.6 110 52.7
CAN.G1648.3 Capsicum annuum HOM05D003998 ORTHO05D005144 2.1e-17 93.2 84 58.3
Rhsim09G0058600 Rhododendron simsii HOM05D003998 ORTHO05D005144 2.1e-17 93.2 151 48.3
Solyc09g092140.3 Solanum lycopersicum HOM05D003998 ORTHO05D005144 4.6e-17 92.0 108 50.9
GSVIVG01020986001 Vitis vinifera HOM05D003998 ORTHO05D005144 7.9e-17 91.3 99 57.6
PGSC0003DMG400026420 Solanum tuberosum HOM05D003998 ORTHO05D005144 2.3e-16 89.7 108 51.9
FAN12G4114 Fragaria x ananassa HOM05D003998 ORTHO05D005144 3.0e-16 89.4 87 57.5
FAN22G0959 Fragaria x ananassa HOM05D003998 ORTHO05D005144 3.0e-16 89.4 87 57.5
Manes.15G055500 Manihot esculenta HOM05D003998 ORTHO05D005144 3.0e-16 89.4 87 62.1
Sc13g0000270 Simmondsia chinensis HOM05D003998 ORTHO05D005144 3.9e-16 89.0 106 50.0
CANSAT78G0640 Cannabis sativa HOM05D003998 ORTHO05D005144 5.1e-16 88.6 83 59.0
Prupe.1G159900 Prunus persica HOM05D003998 ORTHO05D005144 5.1e-16 88.6 84 54.8
TWI53G1682 Tripterygium wilfordii HOM05D003998 ORTHO05D005144 5.1e-16 88.6 88 54.5
Migut.N00415 Erythranthe guttata HOM05D003998 ORTHO05D005144 6.7e-16 88.2 111 47.7
MSTRG.21978 Avicennia marina HOM05D003998 ORTHO05D005144 2.5e-15 86.3 95 48.4
DCAR_016239 Daucus carota HOM05D003998 ORTHO05D003368 2.5e-15 86.3 84 53.6
FvH4_4g13510 Fragaria vesca HOM05D003998 ORTHO05D005144 2.5e-15 86.3 87 56.3
MD01G1010300 Malus domestica HOM05D003998 ORTHO05D005144 2.5e-15 86.3 87 56.3
Ciclev10004378m.g Citrus clementina HOM05D003998 ORTHO05D005144 3.3e-15 85.9 86 57.0
MD04G1013700 Malus domestica HOM05D003998 ORTHO05D005144 3.3e-15 85.9 85 56.5
RcHm_v2.0_Chr4g0414141 Rosa chinensis HOM05D003998 ORTHO05D005144 4.3e-15 85.5 87 56.3
unitig_22.g6826 Utricularia gibba HOM05D003998 ORTHO05D005144 5.7e-15 85.1 78 61.5
Cfa014947 Carpinus fangiana HOM05D003998 ORTHO05D005144 1.3e-14 84.0 99 49.5
ECA232G0954 Erigeron canadensis HOM05D003998 ORTHO05D005144 1.3e-14 84.0 99 51.5
SGA_v2.0_scaffold128G34122 Striga asiatica HOM05D003998 ORTHO05D005144 1.6e-14 83.6 109 44.0
Lj4g0023654 Lotus japonicus HOM05D003998 ORTHO05D005144 2.1e-14 83.2 84 56.0
arahy.Tifrunner.gnm1.ann1.7DTN51 Arachis hypogaea HOM05D003998 ORTHO05D005144 3.7e-14 82.4 103 48.5
Cc03_g08110 Coffea canephora HOM05D003998 ORTHO05D005144 3.7e-14 82.4 83 55.4
CiPaw.01G118500 Carya illinoinensis HOM05D003998 ORTHO05D005144 6.2e-14 81.6 81 55.6
Haze_11635 Corylus avellana HOM05D003998 ORTHO05D005144 6.2e-14 81.6 79 55.7
Atru.chr4.1608 Acer truncatum HOM05D003998 ORTHO05D005144 2.4e-13 79.7 89 51.7
Cpa.g.sc83.24 Carica papaya HOM05D003998 ORTHO05D021041 2.4e-13 79.7 91 52.7
PSO063G6533 Papaver somniferum HOM05D003998 ORTHO05D005144 2.4e-13 79.7 109 46.8
Medtr8g085220 Medicago truncatula HOM05D003998 ORTHO05D005144 3.1e-13 79.3 86 53.5
PSO017G6005 Papaver somniferum HOM05D003998 ORTHO05D005144 4.1e-13 79.0 109 46.8
Eucgr.H02738 Eucalyptus grandis HOM05D003998 ORTHO05D005144 6.9e-13 78.2 101 44.6
arahy.Tifrunner.gnm1.ann1.DT4C3Q Arachis hypogaea HOM05D003998 ORTHO05D005144 1.2e-12 77.4 103 45.6
MELO3C006304.2 Cucumis melo HOM05D003998 ORTHO05D005144 1.5e-12 77.0 91 51.6
ClCG05G003230 Citrullus lanatus HOM05D003998 ORTHO05D005144 2.0e-12 76.6 85 54.1
CsaV3_3G010860 Cucumis sativus L. HOM05D003998 ORTHO05D005144 2.6e-12 76.3 85 54.1
MBI11_g07440_MAGBIO Magnolia biondii HOM05D003998 ORTHO05D005144 2.6e-12 76.3 109 42.2
Potri.001G317700 Populus trichocarpa HOM05D003998 ORTHO05D005144 3.4e-12 75.9 55 69.1
Sed0015957 Sechium edule HOM05D003998 ORTHO05D005144 3.4e-12 75.9 84 53.6
AUR62018577 Chenopodium quinoa HOM05D003998 ORTHO05D005144 5.8e-12 75.1 94 51.1
Psat7g074560 Pisum sativum HOM05D003998 ORTHO05D005144 7.6e-12 74.7 84 50.0
Lalb_Chr12g0205551 Lupinus albus HOM05D003998 ORTHO05D005144 2.9e-11 72.8 87 47.1
QL06p026526 Quercus lobata HOM05D003998 ORTHO05D005144 2.9e-11 72.8 77 51.9
Ca_17974_v3 Cicer arietinum L. HOM05D003998 ORTHO05D005144 3.8e-11 72.4 86 51.2
AUR62020839 Chenopodium quinoa HOM05D003998 ORTHO05D005144 5.0e-11 72.0 111 44.1
SHI00910 Sapria himalayana HOM05D003998 ORTHO05D005144 5.0e-11 72.0 93 47.3
PGR083G0268 Punica granatum HOM05D003998 ORTHO05D005144 6.5e-11 71.6 109 45.0
EL10Ac3g07474 Beta vulgaris HOM05D003998 ORTHO05D005144 8.4e-11 71.2 108 42.6
Glyma.05G153400 Glycine max HOM05D003998 ORTHO05D005144 8.4e-11 71.2 82 50.0
AL4G27000 Arabidopsis lyrata HOM05D003998 ORTHO05D005144 1.4e-10 70.5 100 45.0
COL.COLO4_20194 Corchorus olitorius HOM05D003998 ORTHO05D005144 1.4e-10 70.5 98 50.0
Phvul.003G050000 Phaseolus vulgaris HOM05D003998 ORTHO05D005144 1.4e-10 70.5 85 49.4
MBI08_g28973_MAGBIO Magnolia biondii HOM05D000059 ORTHO05D005144 2.5e-10 69.7 79 53.2
VMungo0251G3649 Vigna mungo HOM05D003998 ORTHO05D005144 2.5e-10 69.7 93 46.2
Ah.13g078040 Amaranthus hybridus HOM05D003998 ORTHO05D005144 3.2e-10 69.3 110 43.6
Aqoxy2G03902 Aquilegia oxysepala HOM05D003998 ORTHO05D005144 3.2e-10 69.3 96 51.0
Sabra16G0201000 Salix brachista HOM05D003998 ORTHO05D005144 3.2e-10 69.3 86 52.3
Lsat_1_v5_gn_2_46500 Lactuca sativa HOM05D003998 ORTHO05D005144 4.2e-10 68.9 88 53.4
MBI08_g34511_MAGBIO Magnolia biondii HOM05D000059 ORTHO05D005144 5.5e-10 68.6 82 50.0
A05p13770 Brassica napus HOM05D003998 ORTHO05D005144 7.1e-10 68.2 100 46.0
BraA05t20313Z Brassica rapa HOM05D003998 ORTHO05D005144 7.1e-10 68.2 100 46.0
Aa31LG5G5250 Aethionema arabicum HOM05D003998 ORTHO05D005144 9.3e-10 67.8 103 44.7
Glyma.08G111100 Glycine max HOM05D003998 ORTHO05D005144 9.3e-10 67.8 78 51.3
TPR.G11885 Trifolium pratense HOM05D003998 ORTHO05D005144 1.6e-09 67.0 53 62.3
Hund24398 Selenicereus undatus HOM05D003998 ORTHO05D005144 2.1e-09 66.6 70 57.1
AT2G31740 Arabidopsis thaliana HOM05D003998 ORTHO05D005144 2.7e-09 66.2 100 43.0
C04p18040 Brassica napus HOM05D003998 ORTHO05D005144 2.7e-09 66.2 100 45.0
BolC4t23351H Brassica oleracea HOM05D003998 ORTHO05D005144 2.7e-09 66.2 100 45.0
Gohir.A02G020406 Gossypium hirsutum HOM05D003998 ORTHO05D005144 2.7e-09 66.2 71 54.9
BcaB02g10415 Brassica carinata HOM05D003998 ORTHO05D005144 3.5e-09 65.9 100 46.0
Duzib151G0324 Durio zibethinus HOM05D003998 ORTHO05D005144 3.5e-09 65.9 85 49.4
Carub.0004s1305 Capsella rubella HOM05D003998 ORTHO05D005144 4.6e-09 65.5 119 40.3
Thhalv10016302m.g Eutrema salsugineum HOM05D003998 ORTHO05D005144 7.9e-09 64.7 100 43.0
HanXRQChr15g0488261 Helianthus annuus HOM05D003998 ORTHO05D005144 7.9e-09 64.7 48 72.9
CARHR125430 Cardamine hirsuta HOM05D003998 ORTHO05D005144 1.3e-08 63.9 100 44.0
Thecc.04G198600 Theobroma cacao HOM05D003998 ORTHO05D005144 1.8e-08 63.5 70 50.0
Gohir.D02G024300 Gossypium hirsutum HOM05D003998 ORTHO05D005144 3.9e-08 62.4 85 47.1
Gorai.005G030200 Gossypium raimondii HOM05D003998 ORTHO05D005144 3.9e-08 62.4 85 47.1
Sp4g14180 Schrenkiella parvula HOM05D003998 ORTHO05D005144 3.9e-08 62.4 100 43.0
Atru.chr3.3435 Acer truncatum HOM05D000005 ORTHO05D000012 1.1e-07 60.8 48 64.6
Atru.chr4.1609 Acer truncatum HOM05D003998 ORTHO05D021041 2.5e-07 59.7 45 62.2
Os04g0379300 Oryza sativa ssp. japonica HOM05D003998 ORTHO05D005144 5.7e-07 58.5 72 45.8
Migut.I00431 Erythranthe guttata HOM05D003998 ORTHO05D005144 7.4e-07 58.2 106 39.6
ATR0605G199 Amborella trichopoda HOM05D003998 ORTHO05D005144 1.3e-06 57.4 83 48.2
Zm00001eb420660 Zea mays HOM05D003998 ORTHO05D005144 2.2e-06 56.6 55 56.4


User provided reference genes

Program Settings