Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 0.0e+00 1285.4 652 100.0
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 8.6e-298 1026.5 649 82.0
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 4.7e-296 1020.8 647 83.2
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.7e-293 1012.3 630 83.2
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 7.8e-291 1003.4 657 81.6
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 5.1e-290 1000.7 621 83.7
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 4.3e-289 997.7 612 84.8
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 7.3e-289 996.9 643 80.6
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 9.6e-289 996.5 643 80.7
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 1.1e-287 993.0 643 80.6
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 2.4e-287 991.9 643 80.9
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 3.8e-285 984.6 635 81.1
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 8.4e-285 983.4 623 82.2
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 5.4e-284 980.7 628 81.7
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.2e-283 979.5 611 83.6
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 2.1e-283 978.8 628 81.4
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 2.7e-283 978.4 621 81.6
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 7.8e-283 976.9 616 82.5
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 5.1e-282 974.2 615 82.3
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 5.1e-282 974.2 627 81.8
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 5.6e-281 970.7 614 82.1
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 9.6e-281 969.9 640 79.4
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 4.8e-280 967.6 633 80.3
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 3.1e-279 964.9 643 79.6
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 2.0e-278 962.2 619 81.6
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 2.6e-278 961.8 647 78.8
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 4.4e-278 961.1 607 82.2
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 1.7e-277 959.1 620 80.6
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 2.2e-277 958.7 628 80.1
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 2.9e-277 958.4 618 80.4
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.9e-277 958.4 621 80.5
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 2.9e-277 958.4 638 79.6
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.8e-277 958.0 621 81.0
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 4.9e-277 957.6 638 79.3
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 6.4e-277 957.2 590 82.7
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 6.4e-277 957.2 621 80.5
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 3.2e-276 954.9 621 80.7
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 7.1e-276 953.7 622 80.7
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 9.3e-276 953.4 586 82.9
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.5e-275 951.4 583 83.5
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.0e-274 949.9 614 80.1
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 1.3e-274 949.5 621 80.2
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 5.1e-274 947.6 614 80.0
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.5e-273 945.3 610 80.8
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 4.3e-273 944.5 646 77.7
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 4.8e-272 941.0 621 78.3
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 4.8e-272 941.0 612 79.1
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 1.1e-271 939.9 619 79.3
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.4e-271 939.5 594 81.8
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 1.8e-271 939.1 645 77.2
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 4.0e-271 937.9 624 80.0
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 6.9e-271 937.2 610 80.2
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 6.9e-271 937.2 615 79.0
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 9.0e-271 936.8 640 76.9
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 1.2e-270 936.4 621 78.1
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 2.0e-270 935.6 643 76.5
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 5.8e-270 934.1 617 78.6
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 7.6e-270 933.7 608 79.4
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 2.2e-269 932.2 621 77.8
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 8.4e-269 930.2 610 79.8
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.1e-268 929.9 583 81.1
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.1e-268 929.9 647 75.6
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 3.2e-268 928.3 610 78.5
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 2.1e-267 925.6 618 77.8
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 4.6e-267 924.5 621 78.3
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.8e-266 922.5 621 78.1
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 8.7e-266 920.2 615 77.4
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.9e-265 919.1 583 81.0
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 2.1e-264 915.6 583 80.4
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.1e-264 915.6 551 84.2
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 4.8e-264 914.4 629 76.2
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.4e-263 912.9 632 76.6
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 4.5e-262 907.9 628 75.2
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.1e-260 903.3 580 79.5
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 9.6e-257 890.2 615 75.8
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.2e-254 883.2 654 71.7
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 4.5e-254 881.3 580 81.2
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 3.8e-253 878.2 522 84.1
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 2.5e-252 875.5 584 77.1
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 7.1e-252 874.0 593 75.4
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.0e-250 870.2 632 72.6
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 2.3e-250 869.0 610 74.1
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 3.9e-250 868.2 607 75.0
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 8.7e-250 867.1 627 72.2
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.5e-249 866.3 608 74.2
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 3.3e-249 865.1 593 75.5
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 7.4e-249 864.0 592 74.8
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 7.4e-249 864.0 602 74.8
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 9.7e-249 863.6 600 73.3
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.8e-248 861.3 580 76.0
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.4e-247 859.8 650 70.2
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 5.3e-247 857.8 616 72.9
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.2e-246 856.7 593 75.4
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 3.4e-246 855.1 595 75.5
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 7.7e-246 854.0 636 69.2
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 5.0e-245 851.3 606 72.4
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.1e-244 850.1 593 74.5
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.1e-244 850.1 606 72.3
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 1.1e-244 850.1 607 73.3
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.9e-244 849.4 598 73.9
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 4.6e-243 844.7 607 72.8
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 4.6e-243 844.7 589 74.0
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 4.6e-243 844.7 607 72.8
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 7.9e-243 844.0 579 75.0
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.9e-243 844.0 580 75.9
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.0e-242 843.6 611 72.5
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.8e-242 842.8 616 71.9
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 3.9e-242 841.6 641 71.1
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 3.9e-242 841.6 593 74.2
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 3.3e-241 838.6 600 72.2
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 1.7e-240 836.3 587 74.1
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 3.7e-240 835.1 645 71.8
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 1.8e-239 832.8 585 74.0
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.8e-239 832.8 585 74.0
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.5e-236 822.4 547 78.8
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 4.2e-236 821.6 551 75.3
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 9.4e-236 820.5 548 75.5
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.4e-234 816.6 628 69.6
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 3.0e-234 815.5 562 76.9
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.8e-232 808.9 580 72.9
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.7e-221 773.1 535 73.8
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 2.9e-221 772.3 524 74.0
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 8.5e-221 770.8 580 68.4
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 8.5e-221 770.8 641 68.3
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 8.5e-221 770.8 472 82.8
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.2e-220 768.5 594 68.9
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 7.5e-217 757.7 553 69.8
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.4e-215 753.4 581 68.2
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.8e-213 745.3 524 73.3
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 8.5e-213 744.2 421 86.9
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.1e-212 743.8 626 63.1
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.3e-208 730.3 550 69.6
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 3.1e-207 725.7 418 87.1
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.2e-206 723.8 413 86.7
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.6e-206 723.4 635 63.0
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 4.5e-206 721.8 409 86.6
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.5e-204 714.1 632 62.3
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 2.1e-203 713.0 526 69.8
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.9e-202 707.6 536 68.5
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.3e-200 701.0 539 66.8
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 2.9e-192 676.0 513 68.0
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 8.3e-192 674.5 495 69.1
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.4e-191 672.9 527 66.4
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 9.2e-191 671.0 530 65.8
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.3e-180 635.6 498 72.7
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 4.9e-168 595.5 580 54.1
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.1e-164 584.3 379 76.3
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 6.0e-158 562.0 478 59.6
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 2.3e-157 560.1 534 58.8
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.1e-146 523.1 357 79.0
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.8e-139 499.2 351 76.9
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.4e-138 496.9 463 59.4
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.9e-111 407.5 239 83.7
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.0e-76 291.2 157 91.7
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 4.9e-67 260.0 145 91.0
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 4.2e-50 203.8 194 54.1
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 5.4e-50 203.4 194 53.1
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 3.9e-48 197.2 160 59.4
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.5e-47 194.5 160 58.8
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.6e-41 175.3 123 70.7
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 2.5e-39 167.9 98 84.7
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.9e-27 127.9 94 68.1
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.1e-24 117.1 94 62.8
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 6.7e-24 116.7 115 56.5
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.5e-23 114.8 318 28.3
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.2e-20 105.9 196 33.7
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.9e-20 103.6 60 86.7
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.1e-18 99.4 133 39.8
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.6e-17 94.0 190 31.6
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.1e-16 90.5 221 32.1
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 6.7e-16 90.1 86 54.7
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 1.1e-15 89.4 100 53.0
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 9.7e-15 86.3 70 71.4
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.4e-10 72.4 74 58.1
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.3e-08 65.1 55 54.5
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 8.8e-08 63.2 77 46.8


User provided reference genes

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