Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 6.4e-79 297.4 150 100.0
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 3.6e-66 255.0 193 73.6
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.2e-64 250.0 150 82.7
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 7.5e-64 247.3 150 80.0
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.9e-62 242.7 150 78.0
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 2.4e-62 242.3 150 78.7
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 3.2e-62 241.9 149 78.5
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 7.1e-62 240.7 150 76.0
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 9.2e-62 240.4 150 76.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 3.5e-61 238.4 148 75.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 3.5e-61 238.4 150 76.7
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 4.6e-61 238.0 148 75.7
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 1.0e-60 236.9 150 75.3
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 1.5e-59 233.0 150 73.3
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 3.3e-59 231.9 150 72.7
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 3.3e-59 231.9 147 74.1
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 9.5e-59 230.3 150 74.7
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 9.5e-59 230.3 150 72.7
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 9.5e-59 230.3 150 75.3
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.6e-58 229.6 150 73.3
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 4.7e-58 228.0 150 72.0
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 6.2e-58 227.6 148 71.6
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 8.1e-58 227.3 150 72.7
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.1e-57 226.9 147 72.8
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.1e-57 226.9 147 72.8
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 1.1e-57 226.9 147 72.8
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 1.5e-56 223.0 148 71.6
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.5e-56 223.0 150 74.0
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 2.0e-56 222.6 150 70.0
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 2.0e-56 222.6 150 70.0
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 2.6e-56 222.2 148 71.6
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 72.0
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 70.0
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 73.3
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 68.0
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 4.4e-56 221.5 150 72.0
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 7.6e-56 220.7 150 70.7
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 9.9e-56 220.3 150 71.3
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 9.9e-56 220.3 150 70.0
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.7e-55 219.5 151 68.9
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.7e-55 219.5 150 71.3
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 1.7e-55 219.5 148 68.9
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 70.7
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 2.9e-55 218.8 150 70.7
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.9e-55 218.8 150 70.7
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 3.8e-55 218.4 150 72.7
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 3.8e-55 218.4 150 70.0
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 8.4e-55 217.2 150 66.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.4e-54 216.5 150 66.7
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 1.4e-54 216.5 148 67.6
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 66.0
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.2e-54 215.3 150 68.7
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 3.2e-54 215.3 147 70.1
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.1e-54 214.9 150 66.0
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.4e-54 214.5 147 66.7
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 7.1e-54 214.2 150 67.3
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 66.7
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 9.2e-54 213.8 148 67.6
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 68.7
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 64.0
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.7e-53 212.2 149 65.1
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 4.6e-53 211.5 150 64.7
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 64.0
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.0e-52 210.3 222 53.2
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 66.7
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 1.3e-52 209.9 148 68.2
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 1.3e-52 209.9 147 66.0
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 62.7
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 2.3e-52 209.1 149 65.1
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.3e-52 209.1 170 65.9
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 3.0e-52 208.8 157 63.1
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 3.0e-52 208.8 147 65.3
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 3.0e-52 208.8 148 69.6
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 3.0e-52 208.8 161 64.0
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 67.3
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 5.1e-52 208.0 150 66.7
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.1e-52 208.0 150 62.0
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 5.1e-52 208.0 149 65.8
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 5.1e-52 208.0 150 62.7
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 8.6e-52 207.2 143 69.9
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 8.6e-52 207.2 143 69.9
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 8.6e-52 207.2 143 69.9
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.1e-51 206.8 147 63.3
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.1e-51 206.8 147 63.3
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.1e-51 206.8 148 68.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-51 206.8 145 69.0
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-51 206.8 145 69.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.5e-51 206.5 147 63.3
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 1.5e-51 206.5 149 66.4
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.5e-51 206.5 149 67.8
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.9e-51 206.1 143 69.2
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 2.5e-51 205.7 147 63.3
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.5e-51 205.7 143 69.2
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.3e-51 204.9 149 61.7
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 5.6e-51 204.5 160 60.6
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 5.6e-51 204.5 149 63.1
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 2.1e-50 202.6 143 65.0
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 2.8e-50 202.2 149 65.8
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.1e-49 200.3 149 63.1
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.1e-49 200.3 149 64.4
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 1.4e-49 199.9 161 60.2
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 1.4e-49 199.9 150 64.7
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 2.4e-49 199.1 159 59.1
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 4.0e-49 198.4 149 63.1
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 6.9e-49 197.6 181 56.4
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 9.0e-49 197.2 149 63.8
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.2e-48 196.8 148 68.9
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 1.5e-48 196.4 140 62.9
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 2.0e-48 196.1 135 68.9
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 2.0e-48 196.1 149 63.1
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.0e-48 196.1 152 63.2
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.6e-48 195.7 147 63.3
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 2.2e-47 192.6 149 61.1
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 3.8e-47 191.8 149 60.4
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 3.8e-47 191.8 148 64.2
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 4.9e-47 191.4 149 61.1
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 6.4e-47 191.0 149 61.7
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.4e-46 189.9 147 63.9
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 1.9e-46 189.5 150 60.0
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 1.9e-46 189.5 150 60.0
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.4e-46 189.1 144 61.8
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 3.2e-46 188.7 149 59.7
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 4.2e-46 188.3 140 60.0
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 5.4e-46 188.0 149 59.7
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.2e-45 186.8 144 61.8
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.6e-45 186.4 144 60.4
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.5e-45 185.3 144 59.7
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 6.0e-45 184.5 143 60.8
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 6.0e-45 184.5 143 60.8
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 6.0e-45 184.5 143 60.8
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.0e-44 183.7 140 62.9
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.1e-43 180.3 143 60.8
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 4.3e-43 178.3 143 60.1
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 7.3e-43 177.6 143 58.7
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.6e-42 176.4 144 57.6
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.5e-40 169.9 105 75.2
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.5e-40 169.9 105 75.2
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 2.0e-40 169.5 142 59.2
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 2.7e-37 159.1 151 56.3
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 5.1e-36 154.8 149 53.0
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 8.7e-36 154.1 133 60.9
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 2.8e-34 149.1 151 51.7
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 3.7e-34 148.7 89 76.4
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 3.1e-33 145.6 149 51.7
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 5.3e-33 144.8 105 65.7
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.5e-32 143.3 99 67.7
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 1.5e-32 143.3 134 52.2
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 1.5e-32 143.3 134 52.2
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 7.6e-32 141.0 104 59.6
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 7.6e-32 141.0 89 75.3
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.9e-30 136.3 89 70.8
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.6e-29 133.3 89 71.9
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 3.9e-28 128.6 145 44.8
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 5.3e-25 118.2 149 39.6
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.5e-24 116.7 149 45.0
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 2.2e-23 112.8 82 62.2
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 6.5e-23 111.3 97 51.5
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.1e-22 110.5 101 51.5
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 5.5e-22 108.2 140 39.3
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.8e-20 103.2 138 31.9
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.9e-20 102.1 138 32.6
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 5.1e-20 101.7 103 51.5
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.6e-18 96.7 138 37.7
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.4e-17 93.6 149 30.9
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.1e-17 92.0 107 35.5
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 2.2e-15 86.3 149 32.9
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 6.5e-15 84.7 71 60.6
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.9e-12 75.5 86 48.8
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 3.3e-11 72.4 87 42.5
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 4.3e-11 72.0 134 25.4
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 1.3e-10 70.5 52 59.6
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 5.3e-09 65.1 135 26.7
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.0e-08 63.2 82 42.7
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 4.5e-08 62.0 44 59.1
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 1.0e-07 60.8 134 27.6
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.3e-07 60.5 46 58.7


User provided reference genes

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