Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.2e-101 373.2 193 100.0
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 6.1e-66 254.6 193 73.6
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 7.7e-53 211.1 193 60.6
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.7e-52 209.9 193 60.6
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 4.2e-51 205.3 193 58.0
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 2.7e-50 202.6 193 58.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 2.7e-50 202.6 191 57.1
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 3.6e-50 202.2 191 57.1
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 3.6e-50 202.2 192 57.8
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 6.1e-50 201.4 193 56.5
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 8.0e-50 201.1 193 56.5
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 4.0e-49 198.7 193 56.5
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 1.2e-48 197.2 193 55.4
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 1.7e-47 193.4 193 53.9
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 2.8e-47 192.6 190 54.2
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 3.7e-47 192.2 193 53.4
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 6.3e-47 191.4 193 56.0
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 8.3e-47 191.0 191 53.4
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.1e-46 190.7 193 53.4
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.1e-46 190.7 193 55.4
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.8e-46 189.9 193 53.9
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 2.4e-46 189.5 193 53.9
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 5.3e-46 188.3 193 52.8
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 9.1e-46 187.6 190 53.2
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 9.1e-46 187.6 190 53.2
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 9.1e-46 187.6 190 53.2
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 2.0e-45 186.4 191 53.4
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.5e-45 185.7 193 55.4
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 4.5e-45 185.3 193 50.8
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 7.7e-45 184.5 191 52.9
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 7.7e-45 184.5 193 54.9
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.3e-44 183.7 193 53.4
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 2.2e-44 183.0 193 51.3
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 2.2e-44 183.0 193 51.3
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 3.8e-44 182.2 193 52.8
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 6.5e-44 181.4 193 52.3
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 8.5e-44 181.0 193 50.8
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 8.5e-44 181.0 193 51.8
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 1.1e-43 180.6 193 50.3
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.1e-43 180.6 193 51.3
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.5e-43 180.3 193 51.8
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.9e-43 179.9 194 50.5
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 1.9e-43 179.9 191 50.3
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 2.5e-43 179.5 193 51.8
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 2.5e-43 179.5 193 51.8
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 3.2e-43 179.1 193 51.8
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 4.2e-43 178.7 193 51.3
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 4.2e-43 178.7 193 51.8
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 5.5e-43 178.3 193 50.8
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.5e-43 178.3 193 49.2
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.6e-42 176.8 193 48.7
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 1.6e-42 176.8 193 48.7
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 1.6e-42 176.8 191 49.2
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 2.7e-42 176.0 193 48.2
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.6e-42 175.6 193 50.3
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.7e-42 175.3 193 48.2
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.7e-42 175.3 190 48.4
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 6.1e-42 174.9 190 47.4
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 8.0e-42 174.5 193 49.2
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.0e-41 174.1 193 48.7
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 1.0e-41 174.1 191 49.2
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.8e-41 173.3 193 46.6
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.0e-41 172.6 192 47.4
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 3.0e-41 172.6 190 50.0
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 4.0e-41 172.2 194 48.5
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 4.0e-41 172.2 193 49.2
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 5.2e-41 171.8 193 49.7
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 5.2e-41 171.8 191 49.7
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.2e-41 171.8 193 47.2
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 6.8e-41 171.4 192 47.9
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.8e-41 171.4 193 46.6
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 8.8e-41 171.0 213 50.2
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.2e-40 170.6 265 42.3
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 1.2e-40 170.6 190 48.4
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.0e-40 169.9 193 45.6
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 2.6e-40 169.5 191 51.3
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 2.6e-40 169.5 190 47.9
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 4.4e-40 168.7 192 49.0
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 4.4e-40 168.7 204 47.1
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.7e-40 168.3 193 45.1
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 5.7e-40 168.3 192 47.9
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 5.7e-40 168.3 193 45.6
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 5.7e-40 168.3 193 48.7
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 9.8e-40 167.5 190 45.8
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 9.8e-40 167.5 190 45.8
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 9.8e-40 167.5 186 50.5
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 9.8e-40 167.5 186 50.5
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 9.8e-40 167.5 186 50.5
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 9.8e-40 167.5 191 50.3
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.3e-39 167.2 190 45.8
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-39 167.2 188 50.0
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-39 167.2 188 50.0
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.3e-39 167.2 192 50.0
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 2.2e-39 166.4 190 45.8
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.2e-39 166.4 186 50.0
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 2.2e-39 166.4 192 49.5
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.8e-39 166.0 186 50.0
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 2.8e-39 166.0 186 47.3
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.9e-39 165.2 192 44.8
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 6.3e-39 164.9 192 45.8
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.1e-38 164.1 192 47.9
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.4e-38 163.7 192 46.9
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 5.4e-38 161.8 192 46.9
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 7.0e-38 161.4 224 43.8
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 1.2e-37 160.6 192 47.4
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 1.6e-37 160.2 193 47.2
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.7e-37 159.5 190 46.8
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 2.7e-37 159.5 192 46.9
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.7e-37 159.5 195 47.2
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.0e-36 157.5 192 45.8
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.3e-36 157.1 191 50.3
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 1.7e-36 156.8 183 44.8
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 2.3e-36 156.4 96 77.1
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 2.3e-36 156.4 96 77.1
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 5.0e-36 155.2 192 44.8
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 6.6e-36 154.8 192 45.3
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 6.6e-36 154.8 178 48.3
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 8.6e-36 154.5 192 45.8
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 2.5e-35 152.9 193 44.6
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 2.5e-35 152.9 193 44.6
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 2.5e-35 152.9 192 44.8
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.3e-35 152.5 187 45.5
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 4.2e-35 152.1 192 44.3
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 4.2e-35 152.1 183 43.2
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.6e-34 150.2 190 46.8
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.6e-34 150.2 187 45.5
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.1e-34 149.8 187 44.4
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 3.6e-34 149.1 191 45.5
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.7e-34 148.7 187 43.9
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 8.0e-34 147.9 186 44.6
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 8.0e-34 147.9 186 44.6
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 8.0e-34 147.9 186 44.6
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 3.0e-33 146.0 183 45.4
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 5.2e-33 145.2 98 68.4
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.5e-32 143.7 186 44.6
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.5e-32 143.7 186 44.1
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 2.2e-31 139.8 187 42.2
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 4.9e-31 138.7 186 43.0
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.9e-31 138.7 125 60.0
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 1.7e-28 130.2 100 61.0
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.3e-28 129.8 96 65.6
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 5.0e-28 128.6 194 41.8
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 4.3e-27 125.6 181 37.0
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 6.8e-25 118.2 192 39.1
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.4e-22 110.5 132 47.7
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 4.1e-22 109.0 192 38.0
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 7.0e-22 108.2 177 37.9
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 7.0e-22 108.2 177 37.9
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 2.3e-20 103.2 103 52.4
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 3.9e-20 102.4 132 47.0
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 5.0e-20 102.1 142 42.3
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 6.6e-20 101.7 192 35.4
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 3.6e-18 95.9 188 34.0
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 4.7e-18 95.5 78 51.3
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 4.7e-18 95.5 132 42.4
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.0e-17 92.4 132 43.2
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 4.9e-15 85.5 192 30.2
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 7.8e-13 78.2 96 34.4
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.3e-12 76.6 86 48.8
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.3e-12 76.6 99 32.3
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 5.1e-12 75.5 183 29.0
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 8.6e-12 74.7 125 36.8
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 2.5e-11 73.2 96 37.5
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 4.3e-11 72.4 144 32.6
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 5.6e-11 72.0 93 30.1
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.2e-10 70.9 174 27.6
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 6.2e-10 68.6 110 30.0
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 1.1e-09 67.8 62 58.1
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.9e-07 59.7 43 62.8
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 1.4e-06 57.4 96 24.0


User provided reference genes

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