Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 6.0e-55 217.2 108 100.0
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 1.1e-48 196.4 107 94.4
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 5.3e-43 177.6 100 90.0
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 4.5e-42 174.5 100 86.0
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 8.4e-41 170.2 100 82.0
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.4e-40 169.5 100 84.0
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.4e-40 169.5 100 84.0
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 1.4e-40 169.5 100 84.0
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 1.4e-40 169.5 100 82.0
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.9e-40 169.1 100 82.0
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 2.5e-40 168.7 100 82.0
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 2.5e-40 168.7 100 82.0
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 4.2e-40 167.9 100 82.0
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 7.1e-40 167.2 100 81.0
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 7.1e-40 167.2 100 80.0
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 9.3e-40 166.8 100 82.0
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 9.3e-40 166.8 100 82.0
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 9.3e-40 166.8 100 82.0
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 9.3e-40 166.8 100 81.0
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.2e-39 166.4 100 81.0
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 1.2e-39 166.4 100 81.0
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 1.2e-39 166.4 100 81.0
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 1.6e-39 166.0 101 80.2
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 1.6e-39 166.0 100 81.0
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 2.7e-39 165.2 100 81.0
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 3.5e-39 164.9 100 80.0
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 4.6e-39 164.5 100 80.0
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 4.6e-39 164.5 100 81.0
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 6.0e-39 164.1 100 79.0
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 7.9e-39 163.7 100 78.0
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 7.9e-39 163.7 100 82.0
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.3e-38 162.9 100 78.0
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.3e-38 162.9 100 78.0
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.3e-38 162.9 100 78.0
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.8e-38 162.5 100 81.0
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 1.8e-38 162.5 100 78.0
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 2.3e-38 162.2 100 79.0
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.3e-38 162.2 100 78.0
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 2.3e-38 162.2 100 80.0
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.3e-38 162.2 100 79.0
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.3e-38 162.2 100 79.0
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 3.0e-38 161.8 100 76.0
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 3.0e-38 161.8 100 78.0
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 5.1e-38 161.0 100 79.0
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 6.7e-38 160.6 99 76.8
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 8.7e-38 160.2 100 78.0
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 1.1e-37 159.8 100 77.0
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 1.1e-37 159.8 100 78.0
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 1.1e-37 159.8 100 77.0
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 1.1e-37 159.8 100 77.0
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 1.1e-37 159.8 100 79.0
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 1.5e-37 159.5 100 78.0
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 2.5e-37 158.7 100 78.0
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 3.3e-37 158.3 100 77.0
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 3.3e-37 158.3 100 74.0
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 4.3e-37 157.9 100 77.0
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 5.7e-37 157.5 100 75.0
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 5.7e-37 157.5 100 78.0
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 7.4e-37 157.1 100 75.0
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 9.7e-37 156.8 100 76.0
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 1.3e-36 156.4 100 78.0
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.2e-36 155.6 100 76.0
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 2.2e-36 155.6 100 76.0
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 2.8e-36 155.2 100 78.0
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 3.7e-36 154.8 100 73.0
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 4.8e-36 154.5 95 80.0
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 4.8e-36 154.5 100 77.0
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 6.3e-36 154.1 100 77.0
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 6.3e-36 154.1 100 77.0
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 6.3e-36 154.1 100 75.0
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 8.2e-36 153.7 100 75.0
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 1.1e-35 153.3 100 77.0
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 1.4e-35 152.9 100 75.0
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.4e-35 152.9 100 75.0
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.8e-35 152.5 100 72.0
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 2.4e-35 152.1 100 74.0
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 2.4e-35 152.1 100 76.0
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 3.1e-35 151.8 85 92.9
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 3.1e-35 151.8 100 74.0
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 3.1e-35 151.8 100 75.0
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 4.1e-35 151.4 100 72.0
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 4.1e-35 151.4 100 72.0
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 4.1e-35 151.4 100 72.0
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 4.1e-35 151.4 100 75.0
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 5.3e-35 151.0 100 72.0
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 5.3e-35 151.0 100 71.0
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 6.9e-35 150.6 100 75.0
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 9.0e-35 150.2 100 71.0
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 9.0e-35 150.2 100 71.0
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 9.0e-35 150.2 99 74.7
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 9.0e-35 150.2 100 75.0
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 9.0e-35 150.2 100 70.0
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.2e-34 149.8 101 71.3
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 1.2e-34 149.8 100 75.0
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 1.5e-34 149.4 100 72.0
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 2.0e-34 149.1 100 71.0
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 2.0e-34 149.1 100 71.0
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 2.0e-34 149.1 100 71.0
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 2.0e-34 149.1 100 71.0
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 3.4e-34 148.3 100 72.0
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 5.9e-34 147.5 100 73.0
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.0e-33 146.7 100 74.0
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 1.0e-33 146.7 100 73.0
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.3e-33 146.4 100 73.0
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.3e-33 146.4 100 69.0
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 1.7e-33 146.0 100 69.0
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 2.2e-33 145.6 100 70.0
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 2.9e-33 145.2 100 72.0
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 3.8e-33 144.8 100 69.0
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 3.8e-33 144.8 100 69.0
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 8.5e-33 143.7 98 73.5
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 1.1e-32 143.3 137 58.4
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 1.9e-32 142.5 92 78.3
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 7.2e-32 140.6 100 73.0
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 7.2e-32 140.6 101 65.3
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 3.6e-31 138.3 80 92.5
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.8e-30 136.0 100 64.0
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 5.1e-30 134.4 96 67.7
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 6.7e-30 134.0 100 63.0
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 2.2e-28 129.0 85 76.5
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 5.0e-25 117.9 100 57.0
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.1e-23 112.5 80 70.0
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 3.3e-21 105.1 100 58.0
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 3.7e-20 101.7 69 73.9
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.1e-19 100.1 56 80.4
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-19 100.1 70 70.0
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 2.4e-19 99.0 57 89.5
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 4.5e-18 94.7 108 45.4
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 2.3e-14 82.4 103 44.7
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 3.8e-09 65.1 46 71.7
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 4.2e-08 61.6 133 33.1
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 1.2e-07 60.1 39 79.5


User provided reference genes

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