Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 3.3e-164 581.6 289 100.0
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 2.9e-128 462.2 287 81.2
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 8.4e-128 460.7 288 80.2
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 1.2e-126 456.8 286 78.0
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 2.1e-126 456.1 286 79.7
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.7e-126 455.7 286 80.1
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 3.5e-126 455.3 286 79.4
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 4.6e-126 454.9 286 78.7
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 6.0e-126 454.5 286 79.0
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 1.3e-125 453.4 286 79.4
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 1.7e-125 453.0 286 79.0
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 3.9e-125 451.8 286 79.4
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 5.1e-125 451.4 289 78.5
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 6.6e-125 451.1 286 80.1
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.5e-124 449.9 286 78.3
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.9e-124 449.5 286 78.7
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 1.9e-124 449.5 286 79.7
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 1.9e-124 449.5 286 77.6
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 2.5e-124 449.1 286 77.6
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 2.5e-124 449.1 286 80.4
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 4.3e-124 448.4 286 77.6
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 5.6e-124 448.0 286 78.3
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 2.8e-123 445.7 286 78.7
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 2.8e-123 445.7 286 78.7
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 3.6e-123 445.3 286 78.7
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 4.7e-123 444.9 286 76.2
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 8.1e-123 444.1 286 78.0
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 8.1e-123 444.1 287 77.7
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 1.4e-122 443.4 286 79.0
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.8e-122 443.0 286 78.7
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.8e-122 443.0 286 77.6
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 2.4e-122 442.6 286 78.3
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 4.0e-122 441.8 288 77.1
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 6.9e-122 441.0 286 77.6
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 6.9e-122 441.0 286 76.6
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 9.0e-122 440.7 286 76.9
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 2.6e-121 439.1 277 79.8
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 2.6e-121 439.1 286 78.0
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 3.4e-121 438.7 286 78.0
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 1.3e-120 436.8 286 75.9
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.3e-120 436.8 285 77.2
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 1.7e-120 436.4 286 76.6
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 1.7e-120 436.4 286 75.9
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 2.2e-120 436.0 286 76.6
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 4.9e-120 434.9 281 79.0
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 8.4e-120 434.1 286 76.2
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 1.4e-119 433.3 286 76.2
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.4e-119 433.3 287 75.6
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 1.9e-119 433.0 286 76.2
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.4e-119 432.6 286 75.5
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 3.2e-119 432.2 286 75.9
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 4.2e-119 431.8 286 75.5
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 5.4e-119 431.4 286 75.2
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 5.4e-119 431.4 286 75.5
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 9.3e-119 430.6 287 76.0
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 1.2e-118 430.3 286 75.9
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 1.6e-118 429.9 286 74.8
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.7e-118 429.1 286 74.5
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.7e-118 429.1 303 73.3
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 4.6e-118 428.3 323 69.3
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 7.8e-118 427.6 285 76.1
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 7.8e-118 427.6 286 74.8
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 1.0e-117 427.2 286 74.8
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 1.0e-117 427.2 313 71.2
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 3.0e-117 425.6 286 74.5
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 8.7e-117 424.1 286 74.1
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 1.1e-116 423.7 286 74.1
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 1.5e-116 423.3 286 74.1
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 1.9e-116 422.9 286 74.1
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 1.9e-116 422.9 286 74.1
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 9.6e-116 420.6 286 75.5
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 1.3e-115 420.2 285 73.0
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 1.6e-115 419.9 286 74.1
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 2.1e-115 419.5 285 73.7
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 4.8e-115 418.3 286 72.0
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 6.2e-115 417.9 286 72.7
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.4e-114 416.8 306 69.6
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.4e-114 416.8 321 69.2
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 1.8e-114 416.4 286 73.1
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 5.3e-114 414.8 286 73.4
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 1.5e-113 413.3 280 74.6
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 5.8e-113 411.4 286 72.7
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 1.3e-112 410.2 286 71.0
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.4e-111 406.8 286 71.0
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 5.4e-111 404.8 286 70.3
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 1.2e-110 403.7 286 69.6
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 1.2e-110 403.7 286 69.6
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 1.6e-110 403.3 286 72.7
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 1.6e-110 403.3 252 81.3
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 2.7e-110 402.5 286 69.9
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 2.7e-110 402.5 286 68.5
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 1.0e-109 400.6 347 63.1
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 1.3e-109 400.2 286 68.9
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 2.3e-109 399.4 286 68.9
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.5e-108 396.7 286 69.2
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 2.5e-108 396.0 286 68.2
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 2.5e-108 396.0 288 68.8
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 5.6e-108 394.8 286 68.9
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 2.1e-107 392.9 286 68.5
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 1.4e-106 390.2 286 68.2
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 2.4e-106 389.4 283 68.2
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 3.1e-106 389.0 286 68.2
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 9.0e-106 387.5 252 76.6
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 2.6e-105 386.0 286 67.1
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 3.4e-105 385.6 282 71.6
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 7.6e-105 384.4 287 63.4
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 2.3e-101 372.9 252 75.4
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.7e-99 365.5 260 70.4
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 4.8e-99 365.2 285 68.4
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 1.2e-97 360.5 252 72.2
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.7e-96 356.7 286 65.7
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 4.6e-94 348.6 260 68.1
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 3.1e-90 335.9 181 92.8
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 1.0e-85 320.9 286 55.9
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 6.7e-85 318.2 195 79.5
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 2.2e-83 313.2 237 70.9
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 4.1e-82 308.9 208 75.5
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 6.5e-72 275.0 193 74.1
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 5.7e-68 261.9 181 79.6
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 1.3e-67 260.8 322 44.1
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 3.1e-66 256.1 188 70.2
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 7.0e-66 255.0 203 65.5
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.7e-56 223.8 258 49.2
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 4.4e-52 209.1 112 93.8
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 3.1e-50 203.0 142 72.5
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 7.7e-49 198.4 286 45.5
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 4.7e-46 189.1 302 38.1
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 6.8e-45 185.3 133 71.4
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 8.9e-45 184.9 169 59.2
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 1.4e-42 177.6 100 90.0
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 1.5e-36 157.5 119 65.5
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 1.6e-33 147.5 77 96.1
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-30 137.9 176 48.9
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 8.9e-29 131.7 93 76.3
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 1.3e-24 117.9 81 77.8
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 3.4e-20 103.2 57 89.5
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 5.8e-20 102.4 62 79.0
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 1.1e-18 98.2 87 62.1
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 3.5e-17 93.2 53 86.8
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 3.5e-09 66.6 83 43.4


User provided reference genes

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