Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 3.2e-26 120.9 58 100.0
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 1.0e-21 105.9 57 91.2
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 1.4e-21 105.5 57 89.5
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 2.0e-20 101.7 57 89.5
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 1.9e-18 95.1 57 78.9
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 3.2e-18 94.4 56 82.1
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 5.4e-18 93.6 57 75.4
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 5.4e-18 93.6 57 75.4
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 5.4e-18 93.6 57 75.4
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.2e-17 92.4 57 77.2
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.2e-17 92.4 57 77.2
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 1.2e-17 92.4 57 73.7
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 2.7e-17 91.3 57 75.4
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 2.7e-17 91.3 56 76.8
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 4.6e-17 90.5 56 76.8
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 4.6e-17 90.5 56 76.8
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 4.6e-17 90.5 57 75.4
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 7.8e-17 89.7 57 75.4
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 1.0e-16 89.4 57 73.7
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 1.0e-16 89.4 57 73.7
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 1.0e-16 89.4 57 73.7
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.3e-16 89.0 56 73.2
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 1.7e-16 88.6 57 71.9
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 2.3e-16 88.2 57 73.7
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 3.0e-16 87.8 57 71.9
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 3.0e-16 87.8 57 70.2
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 3.9e-16 87.4 57 71.9
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 3.9e-16 87.4 56 71.4
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 3.9e-16 87.4 56 71.4
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 3.9e-16 87.4 57 68.4
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 6.6e-16 86.7 56 73.2
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 8.6e-16 86.3 56 73.2
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 8.6e-16 86.3 57 71.9
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 1.1e-15 85.9 57 66.7
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 1.1e-15 85.9 57 71.9
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 1.1e-15 85.9 55 76.4
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.5e-15 85.5 57 68.4
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 1.5e-15 85.5 57 68.4
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 1.9e-15 85.1 57 70.2
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 1.9e-15 85.1 57 68.4
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 2.5e-15 84.7 57 70.2
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 3.3e-15 84.3 56 67.9
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 3.3e-15 84.3 57 68.4
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 3.3e-15 84.3 57 68.4
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 3.3e-15 84.3 57 68.4
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 3.3e-15 84.3 56 73.2
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 3.3e-15 84.3 55 70.9
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.3e-15 84.3 57 68.4
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 4.3e-15 84.0 57 68.4
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 4.3e-15 84.0 57 66.7
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 5.6e-15 83.6 57 70.2
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 5.6e-15 83.6 56 69.6
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 7.3e-15 83.2 50 86.0
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 7.3e-15 83.2 57 68.4
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 9.5e-15 82.8 57 68.4
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 9.5e-15 82.8 56 71.4
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 9.5e-15 82.8 57 66.7
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 9.5e-15 82.8 57 66.7
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 9.5e-15 82.8 56 71.4
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 9.5e-15 82.8 55 72.7
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 1.2e-14 82.4 57 70.2
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 1.2e-14 82.4 57 68.4
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 1.2e-14 82.4 57 68.4
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.2e-14 82.4 57 64.9
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 1.6e-14 82.0 57 66.7
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 1.6e-14 82.0 55 72.7
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 2.1e-14 81.6 57 68.4
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 2.1e-14 81.6 57 68.4
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 2.1e-14 81.6 57 66.7
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.1e-14 81.6 57 64.9
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 2.8e-14 81.3 57 68.4
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.8e-14 81.3 57 64.9
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 2.8e-14 81.3 57 64.9
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 3.6e-14 80.9 57 64.9
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 3.6e-14 80.9 56 67.9
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 3.6e-14 80.9 57 64.9
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 4.7e-14 80.5 57 66.7
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 6.2e-14 80.1 55 72.7
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 6.2e-14 80.1 55 72.7
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 6.2e-14 80.1 57 66.7
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 8.1e-14 79.7 56 66.1
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 8.1e-14 79.7 57 63.2
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 8.1e-14 79.7 57 64.9
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 8.1e-14 79.7 56 67.9
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 8.1e-14 79.7 55 70.9
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 1.1e-13 79.3 57 66.7
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 1.1e-13 79.3 57 66.7
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 1.1e-13 79.3 57 66.7
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 1.1e-13 79.3 57 66.7
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.1e-13 79.3 56 66.1
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.1e-13 79.3 56 66.1
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 1.4e-13 79.0 57 68.4
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.4e-13 79.0 57 63.2
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 1.4e-13 79.0 55 69.1
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.8e-13 78.6 57 63.2
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 1.8e-13 78.6 57 66.7
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 4.0e-13 77.4 57 64.9
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 4.0e-13 77.4 57 61.4
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 4.0e-13 77.4 57 61.4
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 4.0e-13 77.4 55 69.1
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 4.0e-13 77.4 55 69.1
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 4.0e-13 77.4 56 66.1
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 8.9e-13 76.3 57 61.4
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 8.9e-13 76.3 57 64.9
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 8.9e-13 76.3 55 67.3
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.2e-12 75.9 55 69.1
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 1.2e-12 75.9 56 66.1
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 1.2e-12 75.9 57 63.2
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.5e-12 75.5 55 67.3
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 1.5e-12 75.5 45 86.7
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 2.0e-12 75.1 55 67.3
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 2.6e-12 74.7 55 60.0
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 4.4e-12 73.9 55 61.8
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 5.8e-12 73.6 55 65.5
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 5.8e-12 73.6 57 57.9
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 7.5e-12 73.2 57 59.6
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 1.7e-11 72.0 57 61.4
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 4.1e-10 67.4 40 75.0
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 7.1e-10 66.6 94 43.6
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 6.0e-09 63.5 55 49.1
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.0e-08 62.8 52 57.7
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 3.0e-08 61.2 55 47.3
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 8.6e-08 59.7 57 56.1
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 1.1e-07 59.3 56 51.8


User provided reference genes

Program Settings