Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A188T23 Lonicera japonica HOM05D005323 ORTHO05D006820 3.3e-55 218.0 100 100.0
Lj6P177T10 Lonicera japonica HOM05D005323 ORTHO05D006820 1.5e-23 112.8 52 96.2
Nitab4.5_0002913g0040 Nicotiana tabacum HOM05D005323 ORTHO05D006820 1.3e-22 109.8 52 92.3
arahy.Tifrunner.gnm1.ann1.157ZG7 Arachis hypogaea HOM05D005323 ORTHO05D006820 2.1e-22 109.0 54 87.0
arahy.Tifrunner.gnm1.ann1.353MUE Arachis hypogaea HOM05D005323 ORTHO05D006820 2.1e-22 109.0 54 87.0
HanXRQChr01g0001231 Helianthus annuus HOM05D005323 ORTHO05D006820 2.1e-22 109.0 52 90.4
CiPaw.02G099700 Carya illinoinensis HOM05D005323 ORTHO05D006820 2.8e-22 108.6 50 96.0
MELO3C011851.2 Cucumis melo HOM05D005323 ORTHO05D006820 2.8e-22 108.6 52 92.3
CsaV3_5G030120 Cucumis sativus L. HOM05D005323 ORTHO05D006820 2.8e-22 108.6 52 92.3
Hma1.2p1_1156F.1_g262335 Hydrangea macrophylla HOM05D005323 ORTHO05D006820 2.8e-22 108.6 50 96.0
Hma1.2p1_1156F.1_g262340 Hydrangea macrophylla HOM05D005323 ORTHO05D006820 2.8e-22 108.6 50 96.0
Nitab4.5_0000285g0060 Nicotiana tabacum HOM05D005323 ORTHO05D006820 2.8e-22 108.6 50 96.0
QL10p057057 Quercus lobata HOM05D005323 ORTHO05D006820 2.8e-22 108.6 50 96.0
CANSAT56G3038 Cannabis sativa HOM05D005323 ORTHO05D006820 3.6e-22 108.2 54 87.0
Cc11_g02260 Coffea canephora HOM05D005323 ORTHO05D006820 3.6e-22 108.2 52 84.6
Lalb_Chr14g0364721 Lupinus albus HOM05D005323 ORTHO05D006820 3.6e-22 108.2 54 87.0
Peaxi162Scf00883g00035 Petunia axillaris HOM05D005323 ORTHO05D006820 3.6e-22 108.2 50 94.0
Actinidia27124 Actinidia chinensis HOM05D005323 ORTHO05D006820 4.8e-22 107.8 50 92.0
ECA240G0264 Erigeron canadensis HOM05D005323 ORTHO05D006820 4.8e-22 107.8 52 88.5
Lsat_1_v5_gn_0_9241 Lactuca sativa HOM05D005323 ORTHO05D006820 4.8e-22 107.8 50 94.0
Manes.01G016900 Manihot esculenta HOM05D005323 ORTHO05D006820 4.8e-22 107.8 50 94.0
Dinv18320 Davidia involucrata HOM05D005323 ORTHO05D006820 8.1e-22 107.1 50 92.0
Dinv33215 Davidia involucrata HOM05D005323 ORTHO05D006820 8.1e-22 107.1 50 92.0
PGR042G1263 Punica granatum HOM05D005323 ORTHO05D006820 8.1e-22 107.1 50 94.0
EL10Ac4g07922 Beta vulgaris HOM05D005323 ORTHO05D006820 1.1e-21 106.7 50 90.0
Ca_08300_v3 Cicer arietinum L. HOM05D005323 ORTHO05D006820 1.1e-21 106.7 50 94.0
Medtr7g086360 Medicago truncatula HOM05D005323 ORTHO05D006820 1.1e-21 106.7 50 94.0
Phvul.001G114300 Phaseolus vulgaris HOM05D005323 ORTHO05D006820 1.1e-21 106.7 50 94.0
Sc16g0006150 Simmondsia chinensis HOM05D005323 ORTHO05D006820 1.1e-21 106.7 50 92.0
COL.COLO4_38123 Corchorus olitorius HOM05D005323 ORTHO05D006820 1.4e-21 106.3 50 94.0
Glyma.16G037700 Glycine max HOM05D005323 ORTHO05D006820 1.4e-21 106.3 50 92.0
Glyma.19G114900 Glycine max HOM05D005323 ORTHO05D006820 1.4e-21 106.3 50 92.0
TPR.G17865 Trifolium pratense HOM05D005323 ORTHO05D006820 1.4e-21 106.3 50 92.0
VMungo1383G1964 Vigna mungo HOM05D005323 ORTHO05D006820 1.4e-21 106.3 50 92.0
CSS0020323 Camellia sinensis var. sinensis HOM05D005323 ORTHO05D006820 1.8e-21 105.9 50 92.0
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 1.8e-21 105.9 52 86.5
Lj1g0017737 Lotus japonicus HOM05D005323 ORTHO05D006820 2.4e-21 105.5 50 92.0
Sabra19G0107500 Salix brachista HOM05D005323 ORTHO05D006820 3.1e-21 105.1 50 90.0
Potri.019G096900 Populus trichocarpa HOM05D005323 ORTHO05D006820 4.0e-21 104.8 50 90.0
Sabra19G0108600 Salix brachista HOM05D005323 ORTHO05D006820 4.0e-21 104.8 50 88.0
Sopen03g013260 Solanum pennellii HOM05D005323 ORTHO05D006820 4.0e-21 104.8 50 90.0
PGSC0003DMG400026328 Solanum tuberosum HOM05D005323 ORTHO05D006820 4.0e-21 104.8 50 90.0
Cpa.g.sc17.20 Carica papaya HOM05D005323 ORTHO05D006820 5.3e-21 104.4 50 92.0
Gohir.A10G144900 Gossypium hirsutum HOM05D005323 ORTHO05D006820 5.3e-21 104.4 50 92.0
Gohir.D10G122100 Gossypium hirsutum HOM05D005323 ORTHO05D006820 5.3e-21 104.4 50 92.0
Gorai.011G134300 Gossypium raimondii HOM05D005323 ORTHO05D006820 5.3e-21 104.4 50 92.0
Sed0013916 Sechium edule HOM05D005323 ORTHO05D006820 5.3e-21 104.4 50 92.0
TWI15G0703 Tripterygium wilfordii HOM05D005323 ORTHO05D006820 5.3e-21 104.4 50 94.0
AagrBONN_evm.TU.Sc2ySwM_228.3872 Anthoceros agrestis HOM05D005323 ORTHO05D006820 6.9e-21 104.0 50 90.0
AL4G42640 Arabidopsis lyrata HOM05D005323 ORTHO05D006820 6.9e-21 104.0 50 88.0
DCAR_005453 Daucus carota HOM05D005323 ORTHO05D006820 6.9e-21 104.0 50 88.0
Carub.0004s2630 Capsella rubella HOM05D005323 ORTHO05D006820 9.0e-21 103.6 50 88.0
Cfa015676 Carpinus fangiana HOM05D005323 ORTHO05D006820 9.0e-21 103.6 50 92.0
Ciclev10020927m.g Citrus clementina HOM05D005323 ORTHO05D006820 9.0e-21 103.6 50 90.0
Haze_00854 Corylus avellana HOM05D005323 ORTHO05D006820 9.0e-21 103.6 50 92.0
ATR0743G149 Amborella trichopoda HOM05D005323 ORTHO05D006820 1.2e-20 103.2 52 84.6
AUR62031624 Chenopodium quinoa HOM05D005323 ORTHO05D006820 1.2e-20 103.2 50 90.0
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 1.2e-20 103.2 50 88.0
BcaC08g45003 Brassica carinata HOM05D005323 ORTHO05D006820 1.5e-20 102.8 50 88.0
A07p24790 Brassica napus HOM05D005323 ORTHO05D006820 1.5e-20 102.8 50 88.0
C06p26380 Brassica napus HOM05D005323 ORTHO05D006820 1.5e-20 102.8 50 88.0
BraA07t30124Z Brassica rapa HOM05D005323 ORTHO05D006820 1.5e-20 102.8 50 88.0
Eucgr.L00010 Eucalyptus grandis HOM05D005323 ORTHO05D006820 1.5e-20 102.8 50 90.0
Pp3c6_28640 Physcomitrium patens HOM05D005323 ORTHO05D006820 1.5e-20 102.8 54 79.6
Psat0s4033g0160 Pisum sativum HOM05D005323 ORTHO05D006820 1.5e-20 102.8 50 92.0
AT2G43770 Arabidopsis thaliana HOM05D005323 ORTHO05D006820 2.6e-20 102.1 50 86.0
AUR62020514 Chenopodium quinoa HOM05D005323 ORTHO05D006820 2.6e-20 102.1 50 88.0
Prupe.1G071000 Prunus persica HOM05D005323 ORTHO05D006820 3.4e-20 101.7 50 88.0
PSO675G7169 Papaver somniferum HOM05D005323 ORTHO05D006820 4.5e-20 101.3 52 80.8
Thecc.04G163800 Theobroma cacao HOM05D005323 ORTHO05D006820 4.5e-20 101.3 50 88.0
Duzib212G0476 Durio zibethinus HOM05D005323 ORTHO05D006820 5.8e-20 100.9 50 90.0
THA.LOC104804129 Tarenaya hassleriana HOM05D005323 ORTHO05D006820 5.8e-20 100.9 50 88.0
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 7.6e-20 100.5 50 84.0
FvH4_4g10290 Fragaria vesca HOM05D005323 ORTHO05D006820 7.6e-20 100.5 50 88.0
FAN07G1750 Fragaria x ananassa HOM05D005323 ORTHO05D006820 7.6e-20 100.5 50 88.0
FAN12G3690 Fragaria x ananassa HOM05D005323 ORTHO05D006820 7.6e-20 100.5 50 88.0
FAN12G3871 Fragaria x ananassa HOM05D005323 ORTHO05D006820 7.6e-20 100.5 50 88.0
FAN17G0326 Fragaria x ananassa HOM05D005323 ORTHO05D006820 7.6e-20 100.5 50 88.0
RcHm_v2.0_Chr4g0405641 Rosa chinensis HOM05D005323 ORTHO05D006820 7.6e-20 100.5 50 88.0
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 9.9e-20 100.1 50 84.0
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 9.9e-20 100.1 50 84.0
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 9.9e-20 100.1 50 84.0
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 9.9e-20 100.1 50 84.0
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 9.9e-20 100.1 50 84.0
Thhalv10001531m.g Eutrema salsugineum HOM05D005323 ORTHO05D006820 9.9e-20 100.1 50 84.0
MD16G1243600 Malus domestica HOM05D005323 ORTHO05D006820 9.9e-20 100.1 50 86.0
Rhsim09G0008200 Rhododendron simsii HOM05D005323 ORTHO05D006820 9.9e-20 100.1 50 86.0
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 1.3e-19 99.8 50 86.0
Duzib151G0361 Durio zibethinus HOM05D005323 ORTHO05D006820 1.3e-19 99.8 50 88.0
TWI63G1046 Tripterygium wilfordii HOM05D005323 ORTHO05D006820 1.3e-19 99.8 50 88.0
CiPaw.01G169200 Carya illinoinensis HOM05D005323 ORTHO05D006820 1.7e-19 99.4 50 88.0
QL10p056998 Quercus lobata HOM05D005323 ORTHO05D006820 1.7e-19 99.4 56 80.4
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 1.7e-19 99.4 50 86.0
HPP92_028318 Vanilla planifolia HOM05D005323 ORTHO05D006820 1.7e-19 99.4 50 86.0
BcaB02g07449 Brassica carinata HOM05D005323 ORTHO05D006820 2.2e-19 99.0 50 86.0
Sp5g03440 Schrenkiella parvula HOM05D005323 ORTHO05D006820 2.2e-19 99.0 50 86.0
FAN22G1090 Fragaria x ananassa HOM05D005323 ORTHO05D006820 2.9e-19 98.6 50 86.0
Sp4g25840 Schrenkiella parvula HOM05D005323 ORTHO05D006820 2.9e-19 98.6 50 82.0
Pp3c5_3050 Physcomitrium patens HOM05D005323 ORTHO05D006820 4.9e-19 97.8 54 75.9
BcaC02g07149 Brassica carinata HOM05D000037 ORTHO05D091408 8.4e-19 97.1 61 67.2
C04p70770 Brassica napus HOM05D000037 ORTHO05D000419 8.4e-19 97.1 61 67.2
Thhalv10006086m.g Eutrema salsugineum HOM05D005323 ORTHO05D006820 8.4e-19 97.1 50 84.0
Zm00001eb274960 Zea mays HOM05D005323 ORTHO05D006820 3.2e-18 95.1 50 82.0
Zm00001eb389600 Zea mays HOM05D005323 ORTHO05D006820 3.2e-18 95.1 50 82.0
Os06g0653800 Oryza sativa ssp. japonica HOM05D005323 ORTHO05D006820 4.2e-18 94.7 50 80.0
Lj6C181T4 Lonicera japonica HOM05D005323 ORTHO05D006820 5.4e-18 94.4 44 93.2
Cre06.g255400 Chlamydomonas reinhardtii HOM05D005323 ORTHO05D006820 1.0e-16 90.1 51 76.5
Lj6A185T28 Lonicera japonica HOM05D005323 ORTHO05D006820 1.8e-16 89.4 68 61.8
Psat6g090360 Pisum sativum HOM05D005323 ORTHO05D006820 8.7e-16 87.0 43 90.7
Gorai.005G008900 Gossypium raimondii HOM05D005323 ORTHO05D006820 2.1e-14 82.4 50 76.0
SHI06205 Sapria himalayana HOM05D005323 ORTHO05D000023 4.8e-14 81.3 40 90.0
MCO10G164 Micromonas commoda HOM05D005323 ORTHO05D006820 1.4e-13 79.7 49 67.3
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 1.2e-12 76.6 36 94.4
SHI06778 Sapria himalayana HOM05D005323 ORTHO05D006820 4.5e-12 74.7 46 76.1
Migut.N03056 Erythranthe guttata HOM05D005323 ORTHO05D006820 1.3e-11 73.2 32 93.8
Migut.O00692 Erythranthe guttata HOM05D005323 ORTHO05D006820 1.3e-11 73.2 32 93.8
Oeu015708.1 Olea europaea HOM05D005323 ORTHO05D006820 1.3e-11 73.2 32 93.8
Oeu050326.1 Olea europaea HOM05D005323 ORTHO05D006820 1.3e-11 73.2 32 93.8
TAR362G1141 Trochodendron aralioides HOM05D005323 ORTHO05D006820 1.3e-11 73.2 32 93.8
Atru.chr4.1467 Acer truncatum HOM05D005323 ORTHO05D006820 1.7e-11 72.8 32 90.6
Atru.chr4.1493 Acer truncatum HOM05D005323 ORTHO05D006820 1.7e-11 72.8 32 90.6
SalBow6G4087 Salvia bowleyana HOM05D005323 ORTHO05D006820 1.7e-11 72.8 32 93.8
SHI18816 Sapria himalayana HOM05D005323 ORTHO05D006820 2.2e-11 72.4 43 76.7
SGA_v2.0_scaffold19G08852 Striga asiatica HOM05D005323 ORTHO05D006820 2.9e-11 72.0 32 87.5
MSTRG.22040 Avicennia marina HOM05D005323 ORTHO05D006820 6.5e-11 70.9 32 87.5
PRCOL_00003404 Prasinoderma coloniale HOM05D005323 ORTHO05D006820 1.9e-10 69.3 51 52.9
CARHR138940 Cardamine hirsuta HOM05D005323 ORTHO05D006820 7.1e-10 67.4 32 84.4
Aqoxy4G03253 Aquilegia oxysepala HOM05D005323 ORTHO05D006820 9.3e-10 67.0 32 81.2
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 6.0e-09 64.3 50 64.0
unitig_22.g5706 Utricularia gibba HOM05D005323 ORTHO05D006820 2.3e-08 62.4 32 81.2
AUR62006609 Chenopodium quinoa HOM05D002943 ORTHO05D002685 1.6e-06 56.2 71 35.2
Lj3A843T76 Lonicera japonica HOM05D001610 ORTHO05D001585 3.7e-06 55.1 45 46.7
Haze_27161 Corylus avellana HOM05D005323 ORTHO05D006820 4.8e-06 54.7 32 75.0
Cfa023113 Carpinus fangiana HOM05D005323 ORTHO05D017328 8.2e-06 53.9 45 46.7
Manes.01G131200 Manihot esculenta HOM05D001610 ORTHO05D001585 8.2e-06 53.9 41 51.2


User provided reference genes

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