Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A11T15 Lonicera japonica HOM05D001647 ORTHO05D234949 1.1e-162 576.6 297 100.0
Atru.chr4.2956 Acer truncatum HOM05D001647 ORTHO05D001191 8.0e-25 118.6 107 63.6
Dinv22746 Davidia involucrata HOM05D001647 ORTHO05D001191 5.2e-24 115.9 90 72.2
Thecc.04G177300 Theobroma cacao HOM05D001647 ORTHO05D001191 5.2e-24 115.9 127 53.5
Gohir.D09G205000 Gossypium hirsutum HOM05D001647 ORTHO05D001191 2.0e-23 114.0 140 52.9
Lj3A10G10 Lonicera japonica HOM05D001647 ORTHO05D001191 2.6e-23 113.6 89 67.4
Gorai.006G229000 Gossypium raimondii HOM05D001647 ORTHO05D001191 9.8e-23 111.7 127 55.1
Ciclev10020228m.g Citrus clementina HOM05D001647 ORTHO05D001191 1.7e-22 110.9 91 64.8
Duzib212G0802 Durio zibethinus HOM05D001647 ORTHO05D001191 1.7e-22 110.9 91 65.9
Gohir.A09G211500 Gossypium hirsutum HOM05D001647 ORTHO05D001191 2.2e-22 110.5 127 54.3
Lj3A23G21 Lonicera japonica HOM05D001647 ORTHO05D001191 3.7e-22 109.8 89 65.2
COL.COLO4_16174 Corchorus olitorius HOM05D001647 ORTHO05D001191 4.9e-22 109.4 83 69.9
Eucgr.A00093 Eucalyptus grandis HOM05D001647 ORTHO05D001191 8.3e-22 108.6 103 62.1
GSVIVG01010789001 Vitis vinifera HOM05D001647 ORTHO05D001191 1.4e-21 107.8 111 62.2
CSS0025040 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D001191 3.2e-21 106.7 98 65.3
CSS0028879 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D001191 1.2e-20 104.8 90 67.8
Rhsim02G0081300 Rhododendron simsii HOM05D001647 ORTHO05D001191 1.2e-20 104.8 109 63.3
Lalb_Chr03g0026081 Lupinus albus HOM05D001647 ORTHO05D001191 4.5e-20 102.8 98 62.2
TWI15G0581 Tripterygium wilfordii HOM05D001647 ORTHO05D001191 1.0e-19 101.7 76 71.1
Cfa015176 Carpinus fangiana HOM05D001647 ORTHO05D001191 1.3e-19 101.3 123 53.7
FvH4_4g10890 Fragaria vesca HOM05D001647 ORTHO05D001191 1.7e-19 100.9 99 57.6
Prupe.1G196500 Prunus persica HOM05D001647 ORTHO05D001191 2.3e-19 100.5 109 57.8
RcHm_v2.0_Chr4g0406531 Rosa chinensis HOM05D001647 ORTHO05D001191 2.3e-19 100.5 99 59.6
FAN12G2494 Fragaria x ananassa HOM05D001647 ORTHO05D001191 3.9e-19 99.8 99 56.6
VMungo1127G2188 Vigna mungo HOM05D001647 ORTHO05D001191 6.6e-19 99.0 88 63.6
CiPaw.02G054100 Carya illinoinensis HOM05D001647 ORTHO05D001191 1.1e-18 98.2 109 56.9
QL01p055440 Quercus lobata HOM05D001647 ORTHO05D001191 2.5e-18 97.1 107 57.9
QL10p050116 Quercus lobata HOM05D001647 ORTHO05D001191 2.5e-18 97.1 107 57.9
FAN17G2196 Fragaria x ananassa HOM05D001647 ORTHO05D001191 7.3e-18 95.5 93 57.0
Cpa.g.sc9.296 Carica papaya HOM05D001647 ORTHO05D001191 9.5e-18 95.1 104 58.7
MD04G1042300 Malus domestica HOM05D001647 ORTHO05D001191 1.2e-17 94.7 101 58.4
Phvul.011G053900 Phaseolus vulgaris HOM05D001647 ORTHO05D001191 1.2e-17 94.7 91 60.4
FAN07G0844 Fragaria x ananassa HOM05D001647 ORTHO05D001191 2.1e-17 94.0 93 58.1
THA.LOC104815857 Tarenaya hassleriana HOM05D001647 ORTHO05D001191 2.1e-17 94.0 99 59.6
Cc03_g12350 Coffea canephora HOM05D001647 ORTHO05D001191 3.6e-17 93.2 105 58.1
Lj3g0005963 Lotus japonicus HOM05D001647 ORTHO05D001191 3.6e-17 93.2 90 62.2
Migut.D01562 Erythranthe guttata HOM05D001647 ORTHO05D001191 1.4e-16 91.3 50 88.0
ATR0743G047 Amborella trichopoda HOM05D001647 ORTHO05D001191 1.8e-16 90.9 71 63.4
MBI08_g20601_MAGBIO Magnolia biondii HOM05D001647 ORTHO05D001191 1.8e-16 90.9 91 58.2
DCAR_009853 Daucus carota HOM05D001647 ORTHO05D001191 3.1e-16 90.1 104 51.9
Glyma.12G051900 Glycine max HOM05D001647 ORTHO05D001191 4.0e-16 89.7 132 49.2
Medtr4g067300 Medicago truncatula HOM05D001647 ORTHO05D001191 4.0e-16 89.7 80 65.0
Manes.04G043600 Manihot esculenta HOM05D001647 ORTHO05D001191 1.2e-15 88.2 104 54.8
TPR.G34241 Trifolium pratense HOM05D001647 ORTHO05D001191 1.2e-15 88.2 72 66.7
SGA_v2.0_scaffold221G42702 Striga asiatica HOM05D001647 ORTHO05D001191 1.5e-15 87.8 109 56.9
Nn1g09609 Nelumbo nucifera HOM05D001647 ORTHO05D001191 2.6e-15 87.0 100 57.0
Sed0028231 Sechium edule HOM05D001647 ORTHO05D001191 2.6e-15 87.0 94 56.4
MELO3C009824.2 Cucumis melo HOM05D001647 ORTHO05D001191 7.5e-15 85.5 115 49.6
MD13G1272400 Malus domestica HOM05D001647 ORTHO05D001191 7.5e-15 85.5 65 64.6
Nitab4.5_0000335g0080 Nicotiana tabacum HOM05D001647 ORTHO05D001191 7.5e-15 85.5 132 45.5
Actinidia34599 Actinidia chinensis HOM05D001647 ORTHO05D001191 9.8e-15 85.1 76 59.2
arahy.Tifrunner.gnm1.ann1.G4MAIF Arachis hypogaea HOM05D001647 ORTHO05D001191 9.8e-15 85.1 104 51.0
MSTRG.27406 Avicennia marina HOM05D001647 ORTHO05D001191 9.8e-15 85.1 122 48.4
Ca_20792_v3 Cicer arietinum L. HOM05D001647 ORTHO05D001191 1.3e-14 84.7 123 44.7
SalBow3G2902 Salvia bowleyana HOM05D001647 ORTHO05D001191 1.3e-14 84.7 120 48.3
Peaxi162Scf00141g00924 Petunia axillaris HOM05D001647 ORTHO05D001191 2.2e-14 84.0 105 54.3
AT2G28480 Arabidopsis thaliana HOM05D001647 ORTHO05D001191 2.9e-14 83.6 48 87.5
arahy.Tifrunner.gnm1.ann1.0Q1I8G Arachis hypogaea HOM05D001647 ORTHO05D001191 2.9e-14 83.6 104 50.0
CDE02G4217 Ceratophyllum demersum HOM05D001647 ORTHO05D001191 2.9e-14 83.6 106 52.8
CsaV3_3G040890 Cucumis sativus L. HOM05D001647 ORTHO05D001191 2.9e-14 83.6 114 50.0
Potri.007G129600 Populus trichocarpa HOM05D001647 ORTHO05D001191 2.9e-14 83.6 105 53.3
Carub.0004s0942 Capsella rubella HOM05D001647 ORTHO05D001191 6.4e-14 82.4 48 85.4
Psat7g209920 Pisum sativum HOM05D001647 ORTHO05D001191 6.4e-14 82.4 109 51.4
ClCG10G015540 Citrullus lanatus HOM05D001647 ORTHO05D001191 8.3e-14 82.0 115 47.8
Aa31LG5G7750 Aethionema arabicum HOM05D001528 ORTHO05D002760 1.1e-13 81.6 92 56.5
Thhalv10016829m.g Eutrema salsugineum HOM05D001647 ORTHO05D001191 1.1e-13 81.6 56 76.8
Nitab4.5_0000511g0050 Nicotiana tabacum HOM05D001647 ORTHO05D001191 1.1e-13 81.6 102 52.9
PGR083G0602 Punica granatum HOM05D001647 ORTHO05D001191 1.4e-13 81.3 122 45.9
AL4G21530 Arabidopsis lyrata HOM05D001647 ORTHO05D001191 2.4e-13 80.5 48 85.4
Sabra07G0105500 Salix brachista HOM05D001647 ORTHO05D001191 2.4e-13 80.5 107 51.4
Sp4g11300 Schrenkiella parvula HOM05D001647 ORTHO05D001191 2.4e-13 80.5 48 83.3
Sopen09g001240 Solanum pennellii HOM05D001647 ORTHO05D001191 2.4e-13 80.5 102 53.9
Oeu053823.2 Olea europaea HOM05D001647 ORTHO05D001191 3.2e-13 80.1 123 48.0
CAN.G292.10 Capsicum annuum HOM05D001647 ORTHO05D001191 5.4e-13 79.3 73 63.0
Solyc09g005270.3 Solanum lycopersicum HOM05D001647 ORTHO05D001191 7.0e-13 79.0 92 53.3
PGSC0003DMG400011786 Solanum tuberosum HOM05D001647 ORTHO05D001191 7.0e-13 79.0 104 54.8
C03p31620 Brassica napus HOM05D001647 ORTHO05D001191 9.2e-13 78.6 112 48.2
CAN.G1002.19 Capsicum annuum HOM05D001647 ORTHO05D001191 9.2e-13 78.6 109 52.3
Aqoxy6G01579 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 1.2e-12 78.2 99 57.6
Glyma.11G127300 Glycine max HOM05D001647 ORTHO05D001191 1.2e-12 78.2 90 55.6
A03p26360 Brassica napus HOM05D001647 ORTHO05D001191 1.6e-12 77.8 110 46.4
BcaB01g03105 Brassica carinata HOM05D001647 ORTHO05D001191 2.0e-12 77.4 83 54.2
BcaC01g04968 Brassica carinata HOM05D001647 ORTHO05D001191 2.0e-12 77.4 110 49.1
BolC3t15505H Brassica oleracea HOM05D001647 ORTHO05D001191 2.0e-12 77.4 110 49.1
AUR62002323 Chenopodium quinoa HOM05D001647 ORTHO05D001191 2.0e-12 77.4 91 51.6
Aqoxy6G01582 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 4.6e-12 76.3 120 53.3
A07p19040 Brassica napus HOM05D001647 ORTHO05D001191 6.0e-12 75.9 48 77.1
Ah.07g202130 Amaranthus hybridus HOM05D001647 ORTHO05D001191 1.0e-11 75.1 109 46.8
Os01g0958400 Oryza sativa ssp. japonica HOM05D001647 ORTHO05D001191 1.0e-11 75.1 98 45.9
BolC4t23784H Brassica oleracea HOM05D001647 ORTHO05D001191 3.0e-11 73.6 72 59.7
CARHR121430 Cardamine hirsuta HOM05D001647 ORTHO05D001191 3.0e-11 73.6 109 49.5
Aqoxy6G01580 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 3.9e-11 73.2 98 51.0
C04p22880 Brassica napus HOM05D001647 ORTHO05D001191 6.6e-11 72.4 72 58.3
Sopen12g006070 Solanum pennellii HOM05D001647 ORTHO05D001191 8.6e-11 72.0 105 48.6
EL10Ac3g05979 Beta vulgaris HOM05D001647 ORTHO05D001191 1.1e-10 71.6 106 43.4
Solyc12g014280.2 Solanum lycopersicum HOM05D001647 ORTHO05D001191 1.1e-10 71.6 107 47.7
PGSC0003DMG400015335 Solanum tuberosum HOM05D001647 ORTHO05D001191 1.5e-10 71.2 105 47.6
ECA248G3160 Erigeron canadensis HOM05D001647 ORTHO05D001191 4.3e-10 69.7 103 44.7
unitig_37.g12021 Utricularia gibba HOM05D001647 ORTHO05D001191 5.6e-10 69.3 114 47.4
Sc19g0002950 Simmondsia chinensis HOM05D001647 ORTHO05D001191 7.3e-10 68.9 100 46.0
Zm00001eb140480 Zea mays HOM05D001647 ORTHO05D001191 2.1e-09 67.4 105 45.7
HanXRQChr01g0023811 Helianthus annuus HOM05D001647 ORTHO05D001191 4.7e-09 66.2 113 43.4
AUR62023863 Chenopodium quinoa HOM05D001647 ORTHO05D001191 6.2e-09 65.9 107 46.7
Lsat_1_v5_gn_1_77501 Lactuca sativa HOM05D001647 ORTHO05D001191 1.1e-08 65.1 104 45.2
PSO732G0352 Papaver somniferum HOM05D000793 ORTHO05D001191 4.9e-06 56.2 176 36.4


User provided reference genes

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