Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 3.4e-198 694.9 370 100.0
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 5.1e-154 548.1 363 80.7
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 6.5e-149 531.2 366 77.3
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 8.4e-149 530.8 366 76.8
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 1.3e-146 523.5 366 74.9
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 1.3e-146 523.5 366 74.9
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 2.3e-146 522.7 372 77.4
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 6.7e-146 521.2 369 77.5
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 1.6e-144 516.5 368 76.4
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 4.8e-144 515.0 369 76.4
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 5.8e-142 508.1 371 72.5
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 6.9e-127 458.0 365 66.8
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.6e-126 456.1 369 70.2
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 1.1e-124 450.7 364 65.1
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 1.5e-121 440.3 365 63.6
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 2.0e-121 439.9 364 64.0
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 4.4e-121 438.7 365 63.8
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 2.0e-118 429.9 362 64.6
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 3.5e-118 429.1 364 62.1
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 2.2e-117 426.4 365 62.7
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 2.9e-117 426.0 364 61.5
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.5e-116 423.7 362 61.6
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 1.5e-116 423.7 367 61.0
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 7.2e-116 421.4 365 61.1
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 1.2e-115 420.6 367 60.5
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 1.6e-115 420.2 364 60.4
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.7e-115 419.5 364 61.0
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 8.0e-115 417.9 364 61.0
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.0e-114 417.5 364 60.7
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.0e-114 417.5 364 60.7
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.9e-114 415.6 364 60.4
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 6.7e-114 414.8 406 56.7
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 8.8e-114 414.5 366 60.7
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 2.0e-113 413.3 364 60.2
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 2.6e-113 412.9 369 59.9
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 9.7e-113 411.0 363 61.2
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 9.7e-113 411.0 367 59.9
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 9.7e-113 411.0 364 60.4
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 1.7e-112 410.2 362 59.1
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 3.7e-112 409.1 368 57.3
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 3.7e-112 409.1 365 62.2
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.1e-111 407.5 364 59.6
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 3.1e-111 406.0 364 60.2
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 1.2e-110 404.1 362 60.5
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 4.5e-110 402.1 365 61.4
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 4.5e-110 402.1 366 57.9
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 1.0e-109 401.0 362 59.9
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 6.5e-109 398.3 364 59.3
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 1.9e-108 396.7 367 58.3
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 1.9e-108 396.7 362 59.7
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 5.5e-108 395.2 365 58.4
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 1.2e-107 394.0 369 58.0
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 1.6e-107 393.7 369 56.9
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 4.7e-107 392.1 414 55.1
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 1.0e-106 391.0 365 57.8
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 1.2e-105 387.5 363 57.3
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 1.5e-105 387.1 351 58.4
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 9.8e-105 384.4 427 51.8
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 1.3e-104 384.0 364 58.5
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 4.8e-104 382.1 343 57.7
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 4.8e-104 382.1 361 57.3
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 1.1e-103 380.9 366 57.9
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 3.1e-103 379.4 365 54.5
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 4.1e-103 379.0 346 59.2
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.0e-101 374.4 365 54.2
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 1.3e-101 374.0 340 60.3
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 2.9e-101 372.9 373 54.7
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 3.8e-101 372.5 365 55.9
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.1e-100 370.9 322 62.7
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 9.4e-100 367.9 351 56.4
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.2e-99 367.5 366 54.1
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 4.7e-99 365.5 363 53.2
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 6.1e-99 365.2 363 53.4
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 2.3e-98 363.2 366 53.0
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 2.6e-97 359.8 364 53.3
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 5.7e-97 358.6 247 79.8
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 2.2e-96 356.7 348 54.0
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.7e-96 355.9 367 52.9
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.1e-95 354.4 348 54.3
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 5.4e-95 352.1 363 52.3
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 1.2e-94 350.9 366 51.4
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 1.2e-94 350.9 306 63.1
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.0e-94 350.1 364 52.2
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 1.7e-93 347.1 375 51.7
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 5.0e-93 345.5 366 51.4
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 8.6e-93 344.7 366 52.7
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 2.5e-92 343.2 362 50.8
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 2.1e-91 340.1 352 52.0
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 3.6e-91 339.3 366 50.8
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 2.3e-90 336.7 309 62.8
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 5.2e-90 335.5 309 61.2
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 3.4e-89 332.8 366 49.5
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 4.4e-89 332.4 363 49.3
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 5.7e-89 332.0 361 50.7
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 5.7e-89 332.0 366 49.5
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 4.9e-88 328.9 366 49.5
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 4.9e-88 328.9 308 56.5
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 6.4e-88 328.6 358 49.2
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 6.4e-88 328.6 367 50.4
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.1e-87 327.8 360 50.6
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 1.6e-86 323.9 286 62.2
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 2.0e-86 323.6 300 58.7
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 2.7e-86 323.2 365 48.5
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 8.6e-85 318.2 365 47.7
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 3.6e-83 312.8 322 53.4
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 3.4e-81 306.2 357 47.6
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 1.3e-80 304.3 354 48.0
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 2.2e-80 303.5 358 49.4
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 6.6e-77 292.0 367 44.1
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 4.0e-74 282.7 356 47.8
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 1.2e-73 281.2 292 54.1
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 9.8e-73 278.1 364 45.6
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 6.4e-72 275.4 364 44.0
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 4.6e-70 269.2 362 40.6
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 3.0e-69 266.5 354 42.4
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.2e-65 254.6 341 42.8
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.5e-65 254.2 276 53.3
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 4.4e-65 252.7 243 58.8
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.4e-63 247.7 347 42.7
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.5e-60 237.7 249 55.0
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 2.9e-56 223.4 352 40.3
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 8.4e-56 221.9 351 40.5
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 2.4e-55 220.3 245 50.2
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.3e-53 214.5 237 51.9
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 6.4e-48 195.7 322 40.4
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 1.1e-47 194.9 274 44.9
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 5.4e-47 192.6 296 41.6
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.3e-45 188.0 240 48.3
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 5.8e-41 172.6 354 34.7
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 3.0e-37 160.2 432 29.9
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 1.0e-32 145.2 130 52.3
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 4.9e-32 142.9 121 57.9
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 1.6e-30 137.9 194 43.3
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 1.0e-29 135.2 370 29.5
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 5.0e-24 116.3 159 47.2
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 3.2e-23 113.6 245 33.9
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 5.1e-13 79.7 147 37.4
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 3.3e-12 77.0 193 32.1
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 8.2e-11 72.4 54 61.1
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 1.8e-10 71.2 53 66.0
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 4.1e-10 70.1 53 64.2


User provided reference genes

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