Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 4.5e-39 164.1 80 100.0
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 1.3e-33 146.0 81 90.1
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 1.2e-28 129.4 81 77.8
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 4.6e-28 127.5 81 77.8
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 7.9e-28 126.7 81 77.8
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 1.8e-27 125.6 81 76.5
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 3.9e-27 124.4 80 76.2
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 5.1e-27 124.0 80 75.0
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 5.1e-27 124.0 81 76.5
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 2.0e-26 122.1 81 71.6
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 2.0e-26 122.1 81 76.5
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 7.4e-26 120.2 81 75.3
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.3e-25 119.4 80 71.2
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 1.3e-25 119.4 80 71.2
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.3e-25 119.4 81 70.4
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 1.7e-25 119.0 81 72.8
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 1.7e-25 119.0 79 73.4
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 6.3e-25 117.1 81 72.8
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 8.2e-25 116.7 81 72.8
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 8.2e-25 116.7 79 73.4
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 1.4e-24 115.9 72 75.0
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.4e-24 115.9 80 71.2
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.8e-24 115.5 81 71.6
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 1.8e-24 115.5 80 72.5
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 2.4e-24 115.2 79 72.2
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 3.1e-24 114.8 81 67.9
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 4.1e-24 114.4 64 81.2
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.1e-24 114.4 80 70.0
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 4.1e-24 114.4 68 79.4
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 6.9e-24 113.6 72 70.8
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 6.9e-24 113.6 68 79.4
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 1.5e-23 112.5 80 73.8
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 2.0e-23 112.1 73 71.2
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 2.0e-23 112.1 83 67.5
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 2.0e-23 112.1 81 67.9
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 2.6e-23 111.7 74 73.0
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 2.6e-23 111.7 80 71.2
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 3.4e-23 111.3 81 70.4
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.5e-23 110.9 74 73.0
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 5.9e-23 110.5 63 81.0
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 5.9e-23 110.5 72 70.8
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 5.9e-23 110.5 81 63.0
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 7.7e-23 110.2 58 84.5
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 7.7e-23 110.2 80 67.5
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 1.0e-22 109.8 62 79.0
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 1.0e-22 109.8 59 81.4
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 1.0e-22 109.8 81 66.7
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.0e-22 109.8 80 70.0
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.3e-22 109.4 81 66.7
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 1.7e-22 109.0 65 76.9
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.7e-22 109.0 56 85.7
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.7e-22 109.0 80 68.8
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 2.2e-22 108.6 81 66.7
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.2e-22 108.6 81 66.7
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 2.9e-22 108.2 62 79.0
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 2.9e-22 108.2 54 87.0
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 2.9e-22 108.2 74 66.2
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 3.8e-22 107.8 72 69.4
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 3.8e-22 107.8 72 69.4
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 3.8e-22 107.8 63 76.2
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 3.8e-22 107.8 81 65.4
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 5.0e-22 107.5 59 79.7
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 5.0e-22 107.5 59 79.7
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 5.0e-22 107.5 64 78.1
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 5.0e-22 107.5 82 67.1
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 6.5e-22 107.1 54 87.0
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 6.5e-22 107.1 63 76.2
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 6.5e-22 107.1 62 77.4
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 8.5e-22 106.7 57 84.2
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 8.5e-22 106.7 63 76.2
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.1e-21 106.3 81 67.9
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 1.4e-21 105.9 80 65.0
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.4e-21 105.9 78 64.1
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 1.4e-21 105.9 80 67.5
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 1.9e-21 105.5 80 61.2
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 1.9e-21 105.5 74 71.6
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 2.5e-21 105.1 81 69.1
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.5e-21 105.1 81 65.4
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 3.2e-21 104.8 69 73.9
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 3.2e-21 104.8 81 65.4
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 3.2e-21 104.8 50 92.0
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 4.2e-21 104.4 80 67.5
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 4.2e-21 104.4 81 65.4
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 4.2e-21 104.4 55 81.8
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 4.2e-21 104.4 78 66.7
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 5.5e-21 104.0 65 75.4
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 5.5e-21 104.0 67 70.1
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 7.2e-21 103.6 75 69.3
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 7.2e-21 103.6 82 64.6
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 7.2e-21 103.6 53 83.0
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 7.2e-21 103.6 80 60.0
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 7.2e-21 103.6 79 62.0
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 9.4e-21 103.2 55 81.8
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.2e-20 102.8 81 61.7
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 1.2e-20 102.8 74 68.9
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.6e-20 102.4 62 72.6
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 1.6e-20 102.4 56 80.4
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.6e-20 102.4 79 64.6
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.6e-20 102.4 80 60.0
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 2.1e-20 102.1 80 65.0
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 2.1e-20 102.1 67 73.1
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 2.1e-20 102.1 80 66.2
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 2.1e-20 102.1 78 60.3
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 2.1e-20 102.1 81 66.7
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 2.7e-20 101.7 81 64.2
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 2.7e-20 101.7 81 64.2
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 2.7e-20 101.7 63 71.4
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 3.6e-20 101.3 80 63.8
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 3.6e-20 101.3 80 63.8
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 4.7e-20 100.9 86 60.5
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 4.7e-20 100.9 79 63.3
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 4.7e-20 100.9 80 61.2
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 6.1e-20 100.5 59 79.7
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 6.1e-20 100.5 80 62.5
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 6.1e-20 100.5 80 62.5
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 6.1e-20 100.5 80 62.5
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 6.1e-20 100.5 50 86.0
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 6.1e-20 100.5 69 72.5
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 6.1e-20 100.5 72 66.7
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 7.9e-20 100.1 80 63.8
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 1.0e-19 99.8 80 62.5
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 1.0e-19 99.8 80 62.5
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.0e-19 99.8 80 63.8
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.8e-19 99.0 80 61.2
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 1.8e-19 99.0 90 60.0
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 1.8e-19 99.0 90 60.0
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 1.8e-19 99.0 61 77.0
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.3e-19 98.6 80 62.5
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 3.0e-19 98.2 79 60.8
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 6.7e-19 97.1 73 64.4
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 6.7e-19 97.1 73 64.4
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.5e-18 95.9 50 84.0
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 1.5e-18 95.9 43 95.3
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 1.5e-18 95.9 80 55.0
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 3.3e-18 94.7 76 68.4
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 4.4e-18 94.4 57 68.4
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 4.4e-18 94.4 46 89.1
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 4.4e-18 94.4 58 72.4
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 5.7e-18 94.0 68 61.8
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 7.4e-18 93.6 64 73.4
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 9.7e-18 93.2 91 52.7
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 2.8e-17 91.7 59 72.9
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 2.8e-17 91.7 60 66.7
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 3.7e-17 91.3 58 70.7
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.8e-16 89.0 47 76.6
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 2.4e-16 88.6 57 68.4
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 7.0e-16 87.0 64 65.6
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 4.5e-15 84.3 73 60.3
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 1.0e-14 83.2 42 81.0
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 4.2e-13 77.8 43 74.4
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 1.0e-11 73.2 54 68.5
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 4.0e-11 71.2 54 64.8
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 9.7e-10 66.6 62 56.5
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 1.6e-07 59.3 53 54.7


User provided reference genes

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