Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 1.9e-128 462.6 249 100.0
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 1.1e-83 313.9 259 71.4
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 1.5e-80 303.5 263 72.6
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 8.1e-79 297.7 259 71.0
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 3.8e-76 288.9 253 69.6
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 8.4e-76 287.7 255 68.2
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 1.9e-75 286.6 250 69.6
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 1.3e-73 280.4 252 68.7
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 8.7e-73 277.7 249 67.1
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.5e-72 276.9 249 69.1
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 5.6e-72 275.0 252 67.5
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 4.7e-71 271.9 249 68.3
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 1.8e-70 270.0 250 69.2
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 1.8e-70 270.0 249 66.7
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 2.6e-69 266.2 253 64.4
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.2e-68 263.1 252 65.1
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.9e-68 262.7 251 65.7
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 8.4e-68 261.2 252 65.1
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 1.9e-67 260.0 256 64.8
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 4.2e-67 258.8 253 65.2
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 4.2e-67 258.8 253 63.2
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 5.4e-67 258.5 250 63.6
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 5.4e-67 258.5 252 63.1
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 1.6e-66 256.9 251 64.5
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 1.6e-66 256.9 252 65.1
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 6.0e-66 255.0 246 63.4
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.3e-65 253.8 266 61.7
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 2.3e-65 253.1 250 62.4
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 6.6e-65 251.5 248 62.5
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 4.3e-64 248.8 256 66.0
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.6e-64 248.4 260 58.5
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 1.6e-63 246.9 247 63.2
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 1.6e-63 246.9 251 61.0
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 2.8e-63 246.1 246 60.6
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 3.6e-63 245.7 279 58.4
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 4.8e-63 245.4 271 59.4
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 8.1e-63 244.6 255 60.8
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 1.4e-62 243.8 247 64.4
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 3.1e-62 242.7 230 65.7
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 1.5e-61 240.4 250 57.6
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 4.5e-61 238.8 248 62.1
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 1.7e-60 236.9 256 56.6
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 2.9e-60 236.1 253 59.3
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 4.9e-60 235.3 246 56.5
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 9.3e-59 231.1 254 60.2
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 1.6e-58 230.3 251 60.6
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 7.9e-58 228.0 247 55.9
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 1.0e-57 227.6 256 57.0
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 1.3e-57 227.3 243 59.3
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.3e-57 227.3 265 56.2
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 1.8e-57 226.9 254 59.8
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 2.3e-57 226.5 239 62.8
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 5.1e-57 225.3 251 56.6
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 5.1e-57 225.3 249 57.8
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 1.1e-56 224.2 250 59.2
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 1.5e-56 223.8 254 59.8
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 4.3e-56 222.2 246 56.1
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 4.3e-56 222.2 246 56.9
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 5.6e-56 221.9 247 56.7
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 9.6e-56 221.1 243 58.0
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.3e-55 220.7 259 55.6
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 2.8e-55 219.5 247 55.9
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 3.7e-55 219.2 248 56.5
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 6.2e-55 218.4 258 58.1
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 1.4e-54 217.2 247 55.1
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.4e-54 216.5 248 55.2
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 4.0e-54 215.7 246 55.7
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 5.8e-53 211.8 249 57.4
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 9.9e-53 211.1 248 55.6
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.3e-52 210.7 252 56.3
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 1.7e-52 210.3 246 55.7
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 6.4e-52 208.4 250 52.0
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 6.4e-52 208.4 252 56.0
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.9e-51 206.8 252 56.3
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.9e-51 206.8 246 56.5
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 9.3e-51 204.5 283 53.4
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 1.6e-50 203.8 248 51.6
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 1.0e-49 201.1 179 68.7
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 1.5e-48 197.2 246 52.0
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 4.0e-46 189.1 236 54.7
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 3.4e-45 186.0 274 50.4
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 1.0e-44 184.5 257 51.8
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 6.5e-44 181.8 239 52.3
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 6.5e-44 181.8 211 56.4
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 1.4e-43 180.6 241 51.9
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 1.4e-43 180.6 247 49.8
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 1.9e-43 180.3 233 51.5
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.3e-41 174.1 248 49.6
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 3.9e-41 172.6 246 51.6
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 3.9e-41 172.6 276 44.9
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 1.1e-40 171.0 177 54.8
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 1.9e-40 170.2 235 53.6
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 3.3e-40 169.5 251 49.0
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 4.3e-40 169.1 234 47.9
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 9.7e-40 167.9 261 48.7
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 1.3e-39 167.5 259 50.6
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 2.8e-39 166.4 232 46.1
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 2.4e-38 163.3 233 49.4
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 3.1e-38 162.9 251 45.0
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 3.1e-38 162.9 246 44.7
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 4.1e-38 162.5 236 50.0
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 2.0e-37 160.2 240 48.8
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.0e-37 160.2 217 51.2
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 3.8e-36 156.0 221 48.4
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 5.0e-36 155.6 221 49.3
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 8.5e-36 154.8 221 50.7
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 8.5e-36 154.8 221 50.7
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 8.5e-36 154.8 223 49.3
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 1.1e-35 154.5 242 48.8
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 3.2e-35 152.9 245 48.2
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 5.5e-35 152.1 235 48.9
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 6.1e-34 148.7 237 48.9
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 7.9e-34 148.3 235 48.1
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 1.4e-33 147.5 235 47.7
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 1.4e-33 147.5 234 47.4
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 1.8e-33 147.1 177 53.7
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 3.0e-33 146.4 250 47.2
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 3.0e-33 146.4 238 45.8
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 3.0e-33 146.4 238 46.2
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 6.7e-33 145.2 233 47.6
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 8.8e-33 144.8 233 48.5
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 2.5e-32 143.3 235 47.7
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 4.3e-32 142.5 216 48.1
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 4.3e-32 142.5 244 46.3
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 5.3e-30 135.6 256 43.4
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 6.9e-30 135.2 241 45.6
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 6.9e-30 135.2 239 46.0
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 6.9e-30 135.2 241 45.6
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 6.9e-30 135.2 239 46.0
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.2e-29 134.4 251 43.8
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 5.9e-29 132.1 169 45.6
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.4e-27 127.5 244 44.7
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 1.4e-27 127.5 169 45.6
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 2.0e-24 117.1 98 75.5
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 3.3e-24 116.3 254 38.2
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 7.4e-24 115.2 251 35.5
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 4.8e-23 112.5 161 46.0
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 6.3e-23 112.1 231 42.4
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 4.1e-22 109.4 155 45.2
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 9.4e-19 98.2 94 55.3
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.0e-17 93.2 94 54.3
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 9.1e-14 81.6 149 38.9
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 6.7e-09 65.5 159 34.0
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 7.5e-08 62.0 160 34.4
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 7.5e-08 62.0 66 51.5
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 6.3e-07 58.9 158 32.3
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 6.3e-07 58.9 158 32.9
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 1.1e-06 58.2 158 31.0
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 5.3e-06 55.8 146 34.2


User provided reference genes

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