Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 6.4e-117 424.1 212 100.0
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 3.3e-97 358.6 216 87.5
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 4.3e-97 358.2 218 84.9
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 2.8e-96 355.5 217 85.7
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 8.1e-96 354.0 217 84.8
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 8.9e-95 350.5 216 85.2
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 3.4e-94 348.6 217 83.9
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 4.4e-94 348.2 217 83.4
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 9.9e-94 347.1 217 82.9
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 1.9e-92 342.8 218 82.6
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 1.2e-91 340.1 210 85.7
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.3e-90 336.7 217 80.2
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.3e-90 336.7 219 84.0
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 1.3e-90 336.7 213 84.5
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 2.3e-90 335.9 212 82.1
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 3.9e-90 335.1 218 81.7
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.1e-89 333.6 219 81.7
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.9e-89 332.8 214 82.2
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 1.9e-89 332.8 214 80.4
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 3.3e-89 332.0 212 84.4
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 3.3e-89 332.0 212 83.0
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 5.6e-89 331.3 213 82.2
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 5.6e-89 331.3 218 80.7
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 7.3e-89 330.9 218 81.2
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 9.6e-89 330.5 214 83.2
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 9.6e-89 330.5 214 83.2
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 1.3e-88 330.1 213 83.1
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.3e-88 330.1 213 83.1
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 1.3e-88 330.1 214 79.9
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 1.3e-88 330.1 218 79.8
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.1e-88 329.3 215 80.5
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 2.8e-88 328.9 217 79.3
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 2.8e-88 328.9 214 82.2
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 4.8e-88 328.2 216 81.5
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 4.8e-88 328.2 215 80.9
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 4.8e-88 328.2 214 82.7
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 4.8e-88 328.2 215 81.9
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 4.8e-88 328.2 214 82.7
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 6.2e-88 327.8 214 83.2
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 8.1e-88 327.4 214 82.7
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.1e-87 327.0 218 80.3
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 1.4e-87 326.6 217 80.2
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.8e-87 326.2 211 78.2
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.4e-87 325.9 215 82.3
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 4.0e-87 325.1 217 79.3
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 4.0e-87 325.1 217 78.8
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 4.0e-87 325.1 211 81.0
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 6.9e-87 324.3 218 79.8
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.0e-86 322.8 211 79.6
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 3.4e-86 322.0 226 78.3
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 3.4e-86 322.0 215 77.7
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 5.8e-86 321.2 218 79.4
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.6e-86 320.9 211 78.7
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.6e-86 320.9 211 79.1
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 7.6e-86 320.9 217 78.8
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 9.9e-86 320.5 218 77.5
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.3e-85 320.1 216 79.2
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 1.3e-85 320.1 211 79.6
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.7e-85 319.7 216 79.2
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.7e-85 319.7 215 81.9
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.7e-85 319.7 215 81.9
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.7e-85 319.7 216 77.8
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 2.2e-85 319.3 218 78.0
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 3.8e-85 318.5 217 75.6
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 3.8e-85 318.5 215 79.5
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 4.9e-85 318.2 218 78.4
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 4.9e-85 318.2 214 78.5
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 8.4e-85 317.4 218 77.5
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 1.1e-84 317.0 212 78.8
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 1.1e-84 317.0 218 77.5
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 1.4e-84 316.6 213 79.3
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 1.4e-84 316.6 217 78.3
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 1.4e-84 316.6 211 79.1
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 9.3e-84 313.9 213 77.0
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 9.3e-84 313.9 214 79.0
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 2.7e-83 312.4 216 78.2
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 2.7e-83 312.4 216 78.2
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 7.9e-83 310.8 216 76.4
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 7.9e-83 310.8 216 76.9
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 1.3e-82 310.1 215 77.2
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 2.3e-82 309.3 226 74.3
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 3.0e-82 308.9 217 76.0
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 3.0e-82 308.9 216 75.9
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 1.5e-81 306.6 215 76.7
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 2.5e-81 305.8 218 75.2
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 3.3e-81 305.4 212 76.9
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 4.3e-81 305.1 213 74.6
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 1.3e-80 303.5 198 81.3
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.3e-80 303.5 218 74.3
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.6e-80 303.1 212 76.4
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.1e-80 302.8 207 80.7
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.1e-80 302.8 207 80.7
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 2.1e-80 302.8 215 77.2
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.8e-80 302.4 194 79.9
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 4.8e-80 301.6 207 80.7
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 4.8e-80 301.6 214 74.8
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 8.1e-80 300.8 207 80.2
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.4e-79 300.1 215 74.4
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.8e-79 299.7 214 76.6
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.8e-79 299.7 212 75.5
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 2.4e-79 299.3 212 75.5
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 2.4e-79 299.3 212 75.0
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 1.2e-78 297.0 214 76.2
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 1.5e-78 296.6 214 73.8
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 2.0e-78 296.2 211 74.4
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 2.6e-78 295.8 211 74.4
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 7.6e-78 294.3 211 74.4
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 9.9e-78 293.9 217 74.7
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 1.7e-77 293.1 217 72.4
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 2.2e-77 292.7 214 74.8
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.9e-77 292.4 206 75.2
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.9e-77 292.4 214 74.8
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 6.4e-77 291.2 220 75.0
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 8.4e-77 290.8 219 74.9
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 8.4e-77 290.8 192 78.1
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 1.9e-76 289.7 218 72.9
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 1.9e-76 289.7 196 78.1
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 1.9e-76 289.7 220 74.5
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 1.9e-76 289.7 217 73.3
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 2.4e-76 289.3 219 74.4
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 4.2e-76 288.5 213 75.1
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 4.2e-76 288.5 194 79.9
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 9.3e-76 287.3 193 78.2
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 3.5e-75 285.4 211 71.1
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 1.0e-74 283.9 210 77.6
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.3e-74 283.5 190 80.5
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 5.1e-74 281.6 217 70.5
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 8.7e-74 280.8 212 70.8
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.3e-72 276.9 214 73.4
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.3e-72 276.9 214 73.4
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 5.3e-71 271.6 146 87.7
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.2e-69 266.2 147 85.7
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 2.9e-69 265.8 218 68.8
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 3.8e-69 265.4 148 85.1
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.5e-68 262.7 147 84.4
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 3.2e-68 262.3 216 69.9
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 2.1e-67 259.6 201 69.7
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 7.9e-67 257.7 155 81.9
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 7.9e-67 257.7 161 78.9
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.3e-66 256.9 161 78.9
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.3e-66 256.9 163 78.5
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 2.1e-64 249.6 172 75.6
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 1.2e-59 233.8 143 79.0
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 6.1e-59 231.5 179 68.7
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 5.7e-57 224.9 171 68.4
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 2.8e-56 222.6 149 72.5
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 4.8e-56 221.9 218 62.4
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 6.5e-53 211.5 216 58.8
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 6.9e-47 191.4 211 57.8
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 5.7e-41 171.8 92 88.0
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 9.7e-33 144.4 75 92.0
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 7.7e-22 108.2 108 62.0
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 1.3e-21 107.5 108 62.0
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 8.5e-21 104.8 108 62.0
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 5.6e-12 75.5 79 57.0
Lsat_1_v5_gn_8_63541 Lactuca sativa HOM05D004620 ORTHO05D233710 8.3e-08 61.6 82 53.7
Lsat_1_v5_gn_9_92701 Lactuca sativa HOM05D004620 ORTHO05D231681 5.4e-07 58.9 101 42.6


User provided reference genes

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