Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 5.1e-145 517.7 257 100.0
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 1.7e-124 449.5 257 87.5
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 1.6e-114 416.4 256 78.9
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 2.1e-114 416.0 256 80.1
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 1.8e-113 412.9 256 80.1
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 2.6e-112 409.1 256 78.9
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 3.7e-111 405.2 256 79.3
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 1.4e-110 403.3 256 78.5
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 9.1e-110 400.6 254 78.3
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 4.7e-106 388.3 240 80.8
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 1.0e-105 387.1 252 77.0
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 2.3e-105 386.0 254 77.6
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 3.6e-98 362.1 246 75.2
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 4.1e-94 348.6 254 72.4
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 3.4e-88 328.9 228 71.1
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 9.2e-78 294.3 254 57.1
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 9.2e-78 294.3 254 57.5
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 3.0e-76 289.3 246 59.8
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 3.6e-74 282.3 255 56.9
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 8.1e-74 281.2 256 56.2
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 8.1e-74 281.2 213 69.5
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 1.1e-73 280.8 256 55.5
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 1.8e-73 280.0 239 58.6
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 8.9e-73 277.7 254 54.7
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 8.9e-73 277.7 237 58.6
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 1.5e-72 276.9 217 65.9
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.0e-72 276.6 255 56.9
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 4.4e-72 275.4 254 56.7
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.3e-71 273.9 255 56.1
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 7.1e-70 268.1 258 54.3
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.2e-69 267.3 254 53.9
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 3.5e-69 265.8 241 55.2
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.0e-68 264.2 254 52.8
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.3e-68 263.1 238 55.5
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 3.9e-68 262.3 255 52.9
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 5.1e-68 261.9 254 53.1
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 6.6e-68 261.5 241 55.2
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.1e-67 260.8 254 55.5
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 1.5e-67 260.4 241 54.8
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 1.5e-67 260.4 235 54.9
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 1.9e-67 260.0 257 51.4
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 4.3e-67 258.8 260 53.1
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 5.6e-67 258.5 256 51.6
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 9.6e-67 257.7 254 53.1
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 4.7e-66 255.4 238 53.4
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 8.1e-66 254.6 254 53.5
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.4e-65 253.8 256 50.4
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 3.1e-65 252.7 241 53.9
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 4.0e-65 252.3 241 52.7
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 4.0e-65 252.3 258 49.6
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 4.0e-65 252.3 255 53.3
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 8.9e-65 251.1 252 50.0
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 2.0e-64 250.0 241 52.7
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 2.6e-64 249.6 256 50.8
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 4.4e-64 248.8 226 54.9
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 7.6e-64 248.1 237 54.0
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 9.9e-64 247.7 237 53.6
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 1.7e-63 246.9 256 48.8
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 8.4e-63 244.6 255 52.2
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 8.4e-63 244.6 254 48.0
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 8.4e-63 244.6 237 53.6
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 1.4e-62 243.8 242 53.7
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 1.9e-62 243.4 244 52.0
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.9e-62 243.4 240 52.1
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 2.4e-62 243.0 235 53.6
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 3.2e-62 242.7 258 49.6
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 5.4e-62 241.9 255 50.2
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 9.3e-62 241.1 254 50.0
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 2.1e-61 240.0 242 51.7
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 2.1e-61 240.0 237 52.3
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 2.7e-61 239.6 190 64.2
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 7.8e-61 238.0 255 50.2
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 7.8e-61 238.0 255 50.2
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.0e-60 237.7 254 48.8
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.0e-60 237.7 209 57.4
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 1.3e-60 237.3 243 51.4
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 1.7e-60 236.9 242 51.7
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 2.3e-60 236.5 238 51.3
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 2.3e-60 236.5 238 53.4
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 3.0e-60 236.1 254 48.4
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 3.0e-60 236.1 256 49.6
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 5.1e-60 235.3 236 53.0
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.5e-59 233.0 236 51.3
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.5e-59 233.0 236 51.3
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 2.5e-59 233.0 241 50.6
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 2.5e-59 233.0 239 50.6
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.3e-59 232.6 241 51.0
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 4.3e-59 232.3 239 50.2
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 4.3e-59 232.3 256 47.3
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 5.6e-59 231.9 239 50.2
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 9.6e-59 231.1 239 51.9
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 9.6e-59 231.1 209 56.0
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 1.6e-58 230.3 235 49.8
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 4.8e-58 228.8 238 51.7
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 4.8e-58 228.8 228 51.3
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 1.1e-57 227.6 258 46.5
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 1.4e-57 227.3 245 49.4
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.4e-57 227.3 236 49.6
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.8e-57 226.9 233 51.9
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 3.1e-57 226.1 237 48.9
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 9.0e-57 224.6 256 44.9
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.0e-56 223.4 239 47.3
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.4e-56 222.6 235 51.9
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 2.2e-55 219.9 189 64.6
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 8.4e-55 218.0 215 52.1
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 7.1e-54 214.9 233 48.5
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 7.1e-54 214.9 238 46.6
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 1.6e-53 213.8 249 47.4
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 2.1e-53 213.4 251 44.6
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.5e-53 212.6 241 48.1
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.5e-53 212.6 241 48.1
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 4.6e-53 212.2 238 45.8
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 1.3e-52 210.7 252 43.7
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 2.3e-52 209.9 228 50.0
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 8.7e-52 208.0 236 47.0
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 1.9e-51 206.8 236 47.5
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 7.4e-51 204.9 237 45.1
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 6.2e-50 201.8 244 45.9
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 6.2e-50 201.8 237 46.8
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 8.1e-50 201.4 237 44.7
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 1.4e-49 200.7 244 42.6
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 3.1e-49 199.5 182 58.2
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 4.0e-49 199.1 220 50.9
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.3e-49 198.7 223 50.2
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 3.4e-48 196.1 139 71.9
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 6.4e-47 191.8 194 53.1
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 6.4e-47 191.8 194 53.1
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 8.4e-47 191.4 240 42.1
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 3.5e-45 186.0 195 49.2
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 4.6e-45 185.7 164 58.5
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 7.9e-45 184.9 210 47.1
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 1.3e-44 184.1 208 46.6
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.7e-42 176.0 210 47.6
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.1e-41 174.5 237 38.4
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 4.9e-39 165.6 271 38.4
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 4.3e-35 152.5 242 35.1
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 1.2e-32 144.4 143 52.4
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 8.7e-28 128.3 167 44.9
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 5.7e-27 125.6 101 58.4
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 1.3e-26 124.4 236 33.1
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 1.1e-25 121.3 191 39.3
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.8e-23 112.8 111 49.5
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 9.4e-22 108.2 86 58.1
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 6.1e-21 105.5 86 60.5
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 1.1e-19 101.3 148 42.6
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.5e-19 100.9 87 56.3
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 1.7e-18 97.4 257 30.4
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 1.0e-15 88.2 302 26.5
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 5.0e-15 85.9 73 52.1
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 1.9e-14 84.0 107 38.3
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.9e-12 76.3 75 54.7
BolC3t13711H Brassica oleracea HOM05D000444 ORTHO05D000489 6.5e-07 58.9 42 61.9
C03p12380 Brassica napus HOM05D000444 ORTHO05D000489 4.2e-06 56.2 25 96.0


User provided reference genes

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