Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 2.9e-51 204.9 102 100.0
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 8.6e-27 123.6 112 63.4
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 1.1e-26 123.2 105 66.7
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 1.1e-26 123.2 111 63.1
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 3.6e-25 118.2 111 62.2
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 6.1e-25 117.5 112 64.3
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 8.0e-25 117.1 106 66.0
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 6.8e-24 114.0 99 61.6
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 7.5e-23 110.5 103 59.2
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 9.8e-23 110.2 105 64.8
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 6.3e-22 107.5 99 62.6
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 1.6e-20 102.8 104 55.8
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 2.7e-20 102.1 104 58.7
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 3.5e-20 101.7 76 72.4
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 3.5e-20 101.7 98 60.2
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 1.0e-19 100.1 103 55.3
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 1.7e-19 99.4 106 54.7
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 3.8e-19 98.2 85 68.2
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 1.9e-18 95.9 106 52.8
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 3.3e-18 95.1 81 61.7
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 4.3e-18 94.7 81 63.0
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.6e-18 94.4 81 61.7
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 1.2e-17 93.2 105 55.2
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 1.0e-16 90.1 92 54.3
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 3.0e-16 88.6 80 58.8
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 4.0e-16 88.2 85 57.6
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 4.0e-16 88.2 109 55.0
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 4.0e-16 88.2 106 53.8
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 5.2e-16 87.8 88 55.7
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 1.2e-15 86.7 106 50.0
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 1.5e-15 86.3 104 51.9
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 2.0e-15 85.9 102 48.0
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.4e-15 85.1 85 58.8
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 4.4e-15 84.7 105 53.3
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 5.8e-15 84.3 99 51.5
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 7.5e-15 84.0 76 61.8
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 1.3e-14 83.2 80 58.8
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 1.7e-14 82.8 83 60.2
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 2.2e-14 82.4 76 57.9
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 2.9e-14 82.0 82 61.0
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 3.7e-14 81.6 104 50.0
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 6.4e-14 80.9 98 49.0
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 1.1e-13 80.1 98 46.9
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 1.4e-13 79.7 98 48.0
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 1.4e-13 79.7 62 69.4
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 1.8e-13 79.3 98 49.0
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 1.8e-13 79.3 87 54.0
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 2.4e-13 79.0 106 46.2
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 2.4e-13 79.0 103 45.6
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.4e-13 79.0 82 52.4
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 2.4e-13 79.0 82 52.4
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 4.1e-13 78.2 99 48.5
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 4.1e-13 78.2 106 47.2
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 7.0e-13 77.4 98 44.9
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 9.2e-13 77.0 82 51.2
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 9.2e-13 77.0 108 48.1
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 1.2e-12 76.6 103 44.7
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.2e-12 76.6 81 55.6
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 1.2e-12 76.6 107 45.8
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 1.6e-12 76.3 101 50.5
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 1.6e-12 76.3 106 45.3
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 2.0e-12 75.9 82 50.0
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 4.6e-12 74.7 97 46.4
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 4.6e-12 74.7 129 44.2
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 6.0e-12 74.3 84 56.0
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 7.8e-12 73.9 105 46.7
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 1.0e-11 73.6 105 41.9
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 2.3e-11 72.4 66 56.1
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 3.0e-11 72.0 79 51.9
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 3.0e-11 72.0 72 59.7
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 3.9e-11 71.6 69 56.5
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 5.0e-11 71.2 92 44.6
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 6.6e-11 70.9 105 44.8
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 8.6e-11 70.5 72 58.3
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 1.1e-10 70.1 106 45.3
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 1.5e-10 69.7 106 41.5
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 2.5e-10 68.9 100 46.0
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 2.5e-10 68.9 83 49.4
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 2.5e-10 68.9 110 41.8
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 2.5e-10 68.9 110 41.8
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 2.5e-10 68.9 67 55.2
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 3.3e-10 68.6 82 47.6
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 3.3e-10 68.6 106 44.3
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 5.6e-10 67.8 68 52.9
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 7.3e-10 67.4 101 45.5
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 9.5e-10 67.0 59 57.6
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 1.6e-09 66.2 83 44.6
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 1.6e-09 66.2 75 50.7
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 2.1e-09 65.9 88 48.9
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 2.1e-09 65.9 82 46.3
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 2.8e-09 65.5 85 48.2
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 2.8e-09 65.5 85 48.2
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 2.8e-09 65.5 129 38.0
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 2.8e-09 65.5 66 59.1
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 3.6e-09 65.1 85 44.7
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 6.2e-09 64.3 64 59.4
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 6.2e-09 64.3 54 68.5
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 8.0e-09 63.9 54 57.4
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 8.0e-09 63.9 64 59.4
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 1.1e-08 63.5 84 46.4
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.4e-08 63.2 107 43.0
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 2.3e-08 62.4 90 47.8
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 3.1e-08 62.0 82 45.1
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 4.0e-08 61.6 109 43.1
Os03g0138400 Oryza sativa ssp. japonica HOM05D005475 ORTHO05D006575 6.8e-08 60.8 59 50.8
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 8.9e-08 60.5 48 66.7
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.2e-07 60.1 83 49.4
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 1.5e-07 59.7 82 45.1
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 2.0e-07 59.3 54 57.4
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 3.4e-07 58.5 105 41.0
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 4.4e-07 58.2 41 73.2
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 5.8e-07 57.8 54 57.4
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 5.8e-07 57.8 54 57.4
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 1.3e-06 56.6 54 55.6
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 1.3e-06 56.6 54 55.6
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 1.3e-06 56.6 81 44.4
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 1.7e-06 56.2 54 55.6
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 1.7e-06 56.2 54 55.6
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 1.7e-06 56.2 54 55.6
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 1.7e-06 56.2 71 45.1
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 2.2e-06 55.8 54 55.6
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 2.2e-06 55.8 54 55.6
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 2.2e-06 55.8 85 45.9
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 8.3e-06 53.9 53 52.8


User provided reference genes

Program Settings