Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0027680 Lotus japonicus HOM05D005940 ORTHO05D007027 1.6e-244 849.0 415 100.0
Glyma.20G145700 Glycine max HOM05D005940 ORTHO05D007027 3.1e-168 595.5 365 80.5
Medtr1g103900 Medicago truncatula HOM05D005940 ORTHO05D007027 4.5e-159 565.1 364 75.8
Medtr1g030720 Medicago truncatula HOM05D005940 ORTHO05D007027 1.4e-155 553.5 363 74.7
TPR.G5540 Trifolium pratense HOM05D005940 ORTHO05D007027 2.4e-152 542.7 361 71.5
Medtr1g103870 Medicago truncatula HOM05D005940 ORTHO05D007027 5.4e-152 541.6 362 71.5
Phvul.007G056900 Phaseolus vulgaris HOM05D005940 ORTHO05D007027 5.0e-150 535.0 363 72.5
Psat6g207800 Pisum sativum HOM05D005940 ORTHO05D007027 1.2e-148 530.4 335 76.1
VMungo0720G1649 Vigna mungo HOM05D005940 ORTHO05D007027 1.7e-145 520.0 333 77.8
Lalb_Chr21g0304671 Lupinus albus HOM05D005940 ORTHO05D007027 8.3e-145 517.7 365 71.0
Ca_10908_v3 Cicer arietinum L. HOM05D005940 ORTHO05D007027 9.2e-144 514.2 332 75.6
arahy.Tifrunner.gnm1.ann1.3UA0UH Arachis hypogaea HOM05D005940 ORTHO05D007027 1.6e-143 513.5 365 69.3
arahy.Tifrunner.gnm1.ann1.N3JKH2 Arachis hypogaea HOM05D005940 ORTHO05D007027 3.5e-143 512.3 362 69.3
Cfa001588 Carpinus fangiana HOM05D005940 ORTHO05D007027 4.6e-127 458.8 359 61.0
GSVIVG01016348001 Vitis vinifera HOM05D005940 ORTHO05D007027 4.6e-127 458.8 358 60.3
CiPaw.02G177100 Carya illinoinensis HOM05D005940 ORTHO05D007027 6.6e-126 454.9 359 61.8
TWI38G0416 Tripterygium wilfordii HOM05D005940 ORTHO05D007027 1.8e-123 446.8 360 60.8
QL08p056963 Quercus lobata HOM05D005940 ORTHO05D007027 7.1e-120 434.9 361 60.7
Ciclev10033357m.g Citrus clementina HOM05D005940 ORTHO05D007027 3.0e-118 429.5 363 58.1
TAR623G0325 Trochodendron aralioides HOM05D005940 ORTHO05D007027 6.6e-118 428.3 358 57.5
Gorai.012G093100 Gossypium raimondii HOM05D005940 ORTHO05D007027 1.5e-117 427.2 367 57.2
ClCG02G013840 Citrullus lanatus HOM05D005940 ORTHO05D007027 2.1e-116 423.3 361 58.2
Eucgr.G02795 Eucalyptus grandis HOM05D005940 ORTHO05D007027 3.6e-116 422.5 360 60.3
FAN10G2498 Fragaria x ananassa HOM05D005940 ORTHO05D007027 3.6e-116 422.5 359 59.6
FAN06G4195 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.4e-115 420.6 356 59.8
Prupe.2G219400 Prunus persica HOM05D005940 ORTHO05D007027 1.8e-115 420.2 360 59.7
Sed0018989 Sechium edule HOM05D005940 ORTHO05D007027 2.3e-115 419.9 361 58.4
Atru.chr12.628 Acer truncatum HOM05D005940 ORTHO05D007027 1.5e-114 417.2 354 57.6
CANSAT25G0128 Cannabis sativa HOM05D005940 ORTHO05D007027 2.0e-114 416.8 373 56.0
Hma1.2p1_0192F.1_g083550 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 1.3e-113 414.1 378 56.6
Prupe.2G216400 Prunus persica HOM05D005940 ORTHO05D007027 1.3e-113 414.1 356 59.6
Nn2g10645 Nelumbo nucifera HOM05D005940 ORTHO05D007027 8.4e-113 411.4 345 59.7
Duzib114G0016 Durio zibethinus HOM05D005940 ORTHO05D007027 4.1e-112 409.1 365 56.4
Gohir.D04G082400 Gossypium hirsutum HOM05D005940 ORTHO05D007027 4.1e-112 409.1 367 55.6
RcHm_v2.0_Chr1g0364231 Rosa chinensis HOM05D005940 ORTHO05D007027 4.1e-112 409.1 355 58.6
CsaV3_5G006320 Cucumis sativus L. HOM05D005940 ORTHO05D007027 3.5e-111 406.0 361 57.1
FAN01G1689 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.3e-110 404.1 356 58.7
Lj1A925T62 Lonicera japonica HOM05D005940 ORTHO05D007027 2.3e-110 403.3 337 58.8
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.1e-109 401.0 365 55.1
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 5.6e-109 398.7 366 54.9
FvH4_7g20280 Fragaria vesca HOM05D005940 ORTHO05D007027 5.6e-109 398.7 341 59.5
Peaxi162Scf00208g00211 Petunia axillaris HOM05D005940 ORTHO05D007027 8.1e-108 394.8 358 55.6
Solyc04g049890.4 Solanum lycopersicum HOM05D005940 ORTHO05D007027 1.4e-107 394.0 360 55.0
Migut.F01794 Erythranthe guttata HOM05D005940 ORTHO05D007027 4.0e-107 392.5 359 54.3
PGSC0003DMG400010575 Solanum tuberosum HOM05D005940 ORTHO05D007027 6.9e-107 391.7 361 54.6
Cc09_g02600 Coffea canephora HOM05D005940 ORTHO05D007027 2.0e-106 390.2 358 53.4
Potri.010G216500 Populus trichocarpa HOM05D005940 ORTHO05D007027 2.0e-106 390.2 357 55.5
Aqoxy7G03246 Aquilegia oxysepala HOM05D005940 ORTHO05D007027 3.4e-106 389.4 362 53.0
DCAR_019137 Daucus carota HOM05D005940 ORTHO05D007027 4.4e-106 389.0 345 57.4
Sopen04g020430 Solanum pennellii HOM05D005940 ORTHO05D007027 4.4e-106 389.0 367 54.0
PSO170G0010 Papaver somniferum HOM05D005940 ORTHO05D007027 9.9e-106 387.9 358 53.6
Nitab4.5_0000061g0280 Nicotiana tabacum HOM05D005940 ORTHO05D007027 1.7e-105 387.1 345 56.5
PSO357G0422 Papaver somniferum HOM05D005940 ORTHO05D007027 1.6e-103 380.6 358 52.5
HanXRQChr16g0510921 Helianthus annuus HOM05D005940 ORTHO05D007027 6.0e-103 378.6 358 52.5
Lsat_1_v5_gn_1_128021 Lactuca sativa HOM05D005940 ORTHO05D007027 3.0e-102 376.3 361 51.5
MD01G1112500 Malus domestica HOM05D005940 ORTHO05D007027 5.1e-102 375.6 361 55.1
PGR102G2278 Punica granatum HOM05D005940 ORTHO05D007027 1.3e-100 370.9 358 53.1
FAN03G1319 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.1e-96 357.8 311 58.8
THA.LOC104809986 Tarenaya hassleriana HOM05D005940 ORTHO05D007027 1.4e-96 357.5 369 50.7
Dinv31364 Davidia involucrata HOM05D005940 ORTHO05D007027 9.3e-96 354.8 302 58.6
Thhalv10010491m.g Eutrema salsugineum HOM05D005940 ORTHO05D007027 8.7e-94 348.2 367 51.5
Sp5g07450 Schrenkiella parvula HOM05D005940 ORTHO05D007027 1.5e-93 347.4 368 51.9
CARHR164970 Cardamine hirsuta HOM05D005940 ORTHO05D007027 4.3e-93 345.9 369 50.9
Thecc.10G067000 Theobroma cacao HOM05D005940 ORTHO05D007027 6.2e-92 342.0 302 57.3
AL5G36080 Arabidopsis lyrata HOM05D005940 ORTHO05D007027 1.4e-91 340.9 366 50.3
AUR62027909 Chenopodium quinoa HOM05D005940 ORTHO05D007027 9.9e-90 334.7 367 48.2
EL10Ac2g03550 Beta vulgaris HOM05D005940 ORTHO05D007027 1.3e-89 334.3 337 51.9
Aa31sc33G20 Aethionema arabicum HOM05D005940 ORTHO05D007027 1.7e-89 334.0 380 49.7
Carub.0005s2159 Capsella rubella HOM05D005940 ORTHO05D007027 2.4e-88 330.1 366 49.5
COL.COLO4_23758 Corchorus olitorius HOM05D005940 ORTHO05D007027 3.2e-88 329.7 252 61.9
BolC8t50626H Brassica oleracea HOM05D005940 ORTHO05D007027 2.7e-87 326.6 367 49.9
Hma1.2p1_0192F.1_g083560 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 4.6e-87 325.9 272 59.2
BcaNung04648 Brassica carinata HOM05D005940 ORTHO05D007027 1.3e-86 324.3 364 49.5
BcaB01g00141 Brassica carinata HOM05D005940 ORTHO05D007027 3.0e-86 323.2 370 48.1
AUR62020800 Chenopodium quinoa HOM05D005940 ORTHO05D007027 3.0e-86 323.2 320 52.2
SalBow3G3596 Salvia bowleyana HOM05D005940 ORTHO05D007027 4.3e-85 319.3 349 47.9
CDE11G0619 Ceratophyllum demersum HOM05D005940 ORTHO05D007027 5.6e-85 318.9 333 49.2
Gohir.A05G343900 Gossypium hirsutum HOM05D005940 ORTHO05D007027 4.8e-84 315.8 279 56.3
A09p47960 Brassica napus HOM05D005940 ORTHO05D007027 1.4e-83 314.3 348 51.1
BraA09t40251Z Brassica rapa HOM05D005940 ORTHO05D007027 5.3e-83 312.4 365 48.8
MELO3C011725.2 Cucumis melo HOM05D005940 ORTHO05D007027 5.3e-83 312.4 299 56.5
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 6.9e-83 312.0 345 47.5
C08p30200 Brassica napus HOM05D005940 ORTHO05D007027 9.0e-83 311.6 350 50.0
HPP92_019787 Vanilla planifolia HOM05D005940 ORTHO05D007027 1.2e-82 311.2 364 50.0
Nitab4.5_0003582g0030 Nicotiana tabacum HOM05D005940 ORTHO05D007027 2.0e-82 310.5 259 57.5
Cpa.g.sc1.266 Carica papaya HOM05D005940 ORTHO05D007027 2.9e-81 306.6 273 56.8
CAN.G693.9 Capsicum annuum HOM05D005940 ORTHO05D007027 4.2e-80 302.8 285 54.7
Manes.10G041400 Manihot esculenta HOM05D005940 ORTHO05D007027 1.6e-79 300.8 282 55.7
Haze_16942 Corylus avellana HOM05D005940 ORTHO05D007027 8.2e-76 288.5 228 62.7
Zm00001eb194920 Zea mays HOM05D005940 ORTHO05D007027 3.8e-73 279.6 365 45.8
Sabra10G0167600 Salix brachista HOM05D005940 ORTHO05D007027 1.4e-72 277.7 272 53.7
Rhsim09G0154600 Rhododendron simsii HOM05D005940 ORTHO05D007027 7.2e-72 275.4 272 53.7
ATR0594G026 Amborella trichopoda HOM05D005940 ORTHO05D007027 6.5e-65 252.3 294 48.6
AT3G54970 Arabidopsis thaliana HOM05D005940 ORTHO05D007027 3.1e-59 233.4 272 50.0
Sc06g0001810 Simmondsia chinensis HOM05D005940 ORTHO05D007027 1.1e-56 224.9 174 58.6
Hund22470 Selenicereus undatus HOM05D005940 ORTHO05D007027 1.0e-54 218.4 329 39.5
PGR142G2620 Punica granatum HOM05D005940 ORTHO05D007027 3.3e-53 213.4 272 44.9
Pp3c1_190 Physcomitrium patens HOM05D005940 ORTHO05D007027 4.8e-52 209.5 349 39.0
AagrBONN_evm.TU.Sc2ySwM_344.1014 Anthoceros agrestis HOM05D005940 ORTHO05D007027 6.3e-52 209.1 364 36.3
Medtr1g030710 Medicago truncatula HOM05D005940 ORTHO05D007027 1.4e-51 208.0 217 54.4
BcaNung04643 Brassica carinata HOM05D005940 ORTHO05D007027 2.1e-47 194.1 275 43.3
Mapoly0016s0023 Marchantia polymorpha HOM05D005940 ORTHO05D007027 6.1e-47 192.6 339 37.5
SMO329G0058 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 8.0e-47 192.2 345 38.0
CSS0031020 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 1.8e-46 191.0 191 55.0
SMO201G0153 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 5.7e-45 186.0 342 36.3
SEGI_22112 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 4.7e-39 166.4 222 46.4
SHI28162 Sapria himalayana HOM05D005940 ORTHO05D007027 2.0e-34 151.0 157 50.3
Os02g0252600 Oryza sativa ssp. japonica HOM05D005940 ORTHO05D007027 1.7e-33 147.9 221 44.8
MBI14_g28170_MAGBIO Magnolia biondii HOM05D005940 ORTHO05D007027 1.1e-27 128.6 91 61.5
TPR.G40057 Trifolium pratense HOM05D005940 ORTHO05D007027 5.0e-25 119.8 68 80.9
CBR_g3301 Chara braunii HOM05D003248 ORTHO05D000301 1.1e-24 118.6 392 29.1
Sopen09g009530 Solanum pennellii HOM05D005940 ORTHO05D007027 5.6e-24 116.3 82 56.1
ECA240G2370 Erigeron canadensis HOM05D005940 ORTHO05D007027 1.2e-21 108.6 88 53.4
SEGI_30186 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 1.3e-20 105.1 91 52.7
unitig_46.g18613 Utricularia gibba HOM05D005940 ORTHO05D007027 2.9e-20 104.0 121 45.5
FAN06G2675 Fragaria x ananassa HOM05D005940 ORTHO05D007027 4.9e-20 103.2 232 37.5
Haze_16941 Corylus avellana HOM05D005940 ORTHO05D007027 8.3e-20 102.4 128 41.4
SHI28160 Sapria himalayana HOM05D000105 ORTHO05D000023 9.5e-16 89.0 68 63.2
Cre01.g033516 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 3.6e-15 87.0 202 30.2
PRCOL_00002492 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 4.7e-15 86.7 165 35.8
CSS0028355 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 1.2e-10 72.0 38 81.6
MCO14G149 Micromonas commoda HOM05D005940 ORTHO05D007027 1.2e-10 72.0 173 31.8
PRCOL_00002155 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 2.0e-10 71.2 319 27.3
CSS0026064 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 3.9e-09 67.0 46 58.7
HPP92_019693 Vanilla planifolia HOM05D005940 ORTHO05D002769 5.0e-09 66.6 62 56.5
PRCOL_00006890 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 8.1e-07 59.3 297 23.6
Cre01.g033763 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 5.2e-06 56.6 58 50.0


User provided reference genes

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