Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0027337 Lotus japonicus HOM05D005452 ORTHO05D006618 1.7e-52 209.1 113 100.0
Lj4g0014743 Lotus japonicus HOM05D005452 ORTHO05D006618 3.8e-52 208.0 113 99.1
Ca_14963_v3 Cicer arietinum L. HOM05D005452 ORTHO05D006618 2.9e-44 181.8 113 85.8
Medtr3g464760 Medicago truncatula HOM05D005452 ORTHO05D006618 3.2e-43 178.3 113 83.2
VMungo1383G1569 Vigna mungo HOM05D005452 ORTHO05D006618 4.4e-40 167.9 113 78.8
Glyma.18G249300 Glycine max HOM05D005452 ORTHO05D006618 5.7e-40 167.5 113 78.8
Glyma.09G244200 Glycine max HOM05D005452 ORTHO05D006618 6.3e-39 164.1 112 77.7
VMungo1080G1735 Vigna mungo HOM05D005452 ORTHO05D006618 6.3e-39 164.1 110 80.0
Phvul.008G048300 Phaseolus vulgaris HOM05D005452 ORTHO05D006618 2.4e-38 162.2 113 76.1
Lj4g0021307 Lotus japonicus HOM05D005452 ORTHO05D006618 4.1e-38 161.4 113 82.3
Lalb_Chr03g0040661 Lupinus albus HOM05D005452 ORTHO05D006618 4.1e-38 161.4 113 81.4
TPR.G32914 Trifolium pratense HOM05D005452 ORTHO05D006618 1.2e-37 159.8 113 78.8
Lalb_Chr01g0021741 Lupinus albus HOM05D005452 ORTHO05D006618 3.5e-37 158.3 113 78.8
Psat5g193600 Pisum sativum HOM05D005452 ORTHO05D006618 1.0e-36 156.8 113 78.8
Atru.chr11.2163 Acer truncatum HOM05D005452 ORTHO05D006618 4.9e-31 137.9 113 65.5
Ciclev10033123m.g Citrus clementina HOM05D005452 ORTHO05D006618 2.4e-30 135.6 113 65.5
TAR371G0357 Trochodendron aralioides HOM05D005452 ORTHO05D006618 7.0e-30 134.0 113 67.3
Actinidia08127 Actinidia chinensis HOM05D005452 ORTHO05D006618 9.2e-30 133.7 114 69.3
Dinv15209 Davidia involucrata HOM05D005452 ORTHO05D006618 2.0e-29 132.5 113 68.1
TAR629G2696 Trochodendron aralioides HOM05D005452 ORTHO05D006618 2.0e-29 132.5 113 67.3
GSVIVG01003295001 Vitis vinifera HOM05D005452 ORTHO05D006618 2.0e-29 132.5 113 67.3
Prupe.5G046400 Prunus persica HOM05D005452 ORTHO05D006618 7.8e-29 130.6 113 65.5
CSS0031935 Camellia sinensis var. sinensis HOM05D005452 ORTHO05D006618 5.0e-28 127.9 114 65.8
Thecc.02G263300 Theobroma cacao HOM05D005452 ORTHO05D006618 5.0e-28 127.9 113 64.6
Actinidia01359 Actinidia chinensis HOM05D005452 ORTHO05D006618 1.5e-27 126.3 113 66.4
CiPaw.05G172100 Carya illinoinensis HOM05D005452 ORTHO05D006618 1.5e-27 126.3 115 64.3
HanXRQChr12g0371911 Helianthus annuus HOM05D005452 ORTHO05D006618 2.5e-27 125.6 111 64.0
MD09G1284200 Malus domestica HOM05D005452 ORTHO05D006618 5.6e-27 124.4 114 62.3
CDE10G1265 Ceratophyllum demersum HOM05D005452 ORTHO05D006618 7.3e-27 124.0 113 62.8
Duzib268G1139 Durio zibethinus HOM05D005452 ORTHO05D006618 9.5e-27 123.6 113 62.8
AUR62024237 Chenopodium quinoa HOM05D005452 ORTHO05D006618 1.2e-26 123.2 110 67.3
Sc04g0009650 Simmondsia chinensis HOM05D005452 ORTHO05D006618 1.2e-26 123.2 113 61.9
Gorai.009G233700 Gossypium raimondii HOM05D005452 ORTHO05D006618 2.1e-26 122.5 113 62.8
RcHm_v2.0_Chr7g0208311 Rosa chinensis HOM05D005452 ORTHO05D006618 2.8e-26 122.1 114 64.9
TWI36G1628 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 4.7e-26 121.3 113 61.9
CANSAT11G1680 Cannabis sativa HOM05D005452 ORTHO05D006618 6.1e-26 120.9 113 61.9
FvH4_5g21170 Fragaria vesca HOM05D005452 ORTHO05D006618 8.0e-26 120.6 113 63.7
Gohir.A05G223400 Gossypium hirsutum HOM05D005452 ORTHO05D006618 8.0e-26 120.6 113 61.1
Eucgr.B03269 Eucalyptus grandis HOM05D005452 ORTHO05D006618 1.0e-25 120.2 113 62.8
Sed0011581 Sechium edule HOM05D005452 ORTHO05D006618 1.0e-25 120.2 113 62.8
ClCG10G012250 Citrullus lanatus HOM05D005452 ORTHO05D006618 1.4e-25 119.8 113 64.6
Lsat_1_v5_gn_8_152800 Lactuca sativa HOM05D005452 ORTHO05D006618 1.4e-25 119.8 110 60.0
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.8e-25 119.4 111 61.3
Manes.13G021600 Manihot esculenta HOM05D005452 ORTHO05D006618 2.3e-25 119.0 115 61.7
Nn1g08774 Nelumbo nucifera HOM05D005452 ORTHO05D006618 2.3e-25 119.0 113 61.1
Nitab4.5_0000524g0050 Nicotiana tabacum HOM05D005452 ORTHO05D006618 2.3e-25 119.0 111 63.1
PGR102G3216 Punica granatum HOM05D005452 ORTHO05D006618 2.3e-25 119.0 114 62.3
vmacro06707 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 2.3e-25 119.0 112 61.6
EL10Ac5g10516 Beta vulgaris HOM05D005452 ORTHO05D006618 3.0e-25 118.6 111 60.4
FAN13G0782 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.0e-25 118.6 113 62.8
Nitab4.5_0004217g0010 Nicotiana tabacum HOM05D001410 ORTHO05D006618 5.2e-25 117.9 110 63.6
Oeu056705.1 Olea europaea HOM05D005452 ORTHO05D006618 5.2e-25 117.9 112 61.6
QL03p056962 Quercus lobata HOM05D005452 ORTHO05D006618 5.2e-25 117.9 113 62.8
Lsat_1_v5_gn_4_85301 Lactuca sativa HOM05D005452 ORTHO05D006618 6.8e-25 117.5 110 60.0
Nitab4.5_0002322g0150 Nicotiana tabacum HOM05D001410 ORTHO05D006618 6.8e-25 117.5 113 61.9
SalBow6G0301 Salvia bowleyana HOM05D005452 ORTHO05D006618 6.8e-25 117.5 79 77.2
SalBow6G0335 Salvia bowleyana HOM05D005452 ORTHO05D006618 6.8e-25 117.5 79 77.2
SalBow6G1267 Salvia bowleyana HOM05D005452 ORTHO05D006618 6.8e-25 117.5 79 77.2
SalBow6G2856 Salvia bowleyana HOM05D005452 ORTHO05D006618 6.8e-25 117.5 79 77.2
SalBow6G4107 Salvia bowleyana HOM05D005452 ORTHO05D006618 6.8e-25 117.5 79 77.2
SalBow6G4340 Salvia bowleyana HOM05D005452 ORTHO05D006618 6.8e-25 117.5 79 77.2
SalBow6G4977 Salvia bowleyana HOM05D005452 ORTHO05D006618 6.8e-25 117.5 79 77.2
Hund06040 Selenicereus undatus HOM05D005452 ORTHO05D006618 6.8e-25 117.5 109 63.3
TWI18G1019 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 6.8e-25 117.5 113 60.2
Cfa009234 Carpinus fangiana HOM05D005452 ORTHO05D006618 1.2e-24 116.7 109 61.5
DCAR_003344 Daucus carota HOM05D005452 ORTHO05D006618 1.2e-24 116.7 110 66.4
Sopen10g023920 Solanum pennellii HOM05D005452 ORTHO05D006618 1.2e-24 116.7 108 63.0
THA.LOC104805276 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 1.2e-24 116.7 113 59.3
AUR62005503 Chenopodium quinoa HOM05D005452 ORTHO05D006618 1.5e-24 116.3 103 68.0
COL.COLO4_23485 Corchorus olitorius HOM05D005452 ORTHO05D006618 1.5e-24 116.3 110 62.7
MD06G1040200 Malus domestica HOM05D005452 ORTHO05D006618 1.5e-24 116.3 111 61.3
Solyc10g054060.2 Solanum lycopersicum HOM05D005452 ORTHO05D006618 1.5e-24 116.3 106 63.2
BcaB07g30231 Brassica carinata HOM05D005452 ORTHO05D006618 2.0e-24 115.9 113 60.2
BcaC03g17336 Brassica carinata HOM05D005452 ORTHO05D006618 2.0e-24 115.9 113 60.2
THA.LOC104824009 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 2.6e-24 115.5 113 58.4
CiPaw.04G056800 Carya illinoinensis HOM05D005452 ORTHO05D006618 3.4e-24 115.2 103 66.0
MBI15_g04991_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 3.4e-24 115.2 104 65.4
Sp2g15510 Schrenkiella parvula HOM05D005452 ORTHO05D006618 3.4e-24 115.2 113 60.2
unitig_22.g6942 Utricularia gibba HOM05D005452 ORTHO05D006618 3.4e-24 115.2 82 75.6
CsaV3_3G032030 Cucumis sativus L. HOM05D005452 ORTHO05D006618 4.4e-24 114.8 113 61.9
SalBow6G3385 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.4e-24 114.8 78 75.6
SalBow6G6484 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.4e-24 114.8 79 75.9
Cpa.g.c31584 Carica papaya HOM05D005452 ORTHO05D006618 7.5e-24 114.0 110 60.9
Thhalv10005184m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 9.8e-24 113.6 113 57.5
Thhalv10005186m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 9.8e-24 113.6 113 58.4
ECA233G5110 Erigeron canadensis HOM05D005452 ORTHO05D006618 1.7e-23 112.8 112 57.1
PSO210G2974 Papaver somniferum HOM05D005452 ORTHO05D006618 1.7e-23 112.8 112 56.2
Hund25399 Selenicereus undatus HOM05D005452 ORTHO05D006618 1.7e-23 112.8 82 74.4
FAN04G1087 Fragaria x ananassa HOM05D005452 ORTHO05D006618 2.2e-23 112.5 110 63.6
Carub.0005s0428 Capsella rubella HOM05D005452 ORTHO05D006618 2.9e-23 112.1 113 58.4
CARHR147370 Cardamine hirsuta HOM05D005452 ORTHO05D006618 2.9e-23 112.1 113 59.3
Hma1.2p1_0079F.1_g041110 Hydrangea macrophylla HOM05D005452 ORTHO05D006618 2.9e-23 112.1 79 78.5
AT3G26360 Arabidopsis thaliana HOM05D005452 ORTHO05D006618 3.7e-23 111.7 114 60.5
FAN08G2976 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.7e-23 111.7 108 61.1
MD02G1109400 Malus domestica HOM05D005452 ORTHO05D006618 3.7e-23 111.7 78 73.1
SGA_v2.0_scaffold12G06036 Striga asiatica HOM05D005452 ORTHO05D006618 3.7e-23 111.7 80 75.0
A02p34530 Brassica napus HOM05D005452 ORTHO05D006618 4.9e-23 111.3 110 59.1
C02p52850 Brassica napus HOM05D005452 ORTHO05D006618 4.9e-23 111.3 110 59.1
BraA02t08463Z Brassica rapa HOM05D005452 ORTHO05D006618 4.9e-23 111.3 110 59.1
FAN18G0628 Fragaria x ananassa HOM05D005452 ORTHO05D006618 4.9e-23 111.3 108 62.0
Rhsim12G0039600 Rhododendron simsii HOM05D005452 ORTHO05D006618 4.9e-23 111.3 80 76.2
Potri.010G048600 Populus trichocarpa HOM05D005452 ORTHO05D006618 6.4e-23 110.9 119 56.3
SGA_v2.0_scaffold293G47424 Striga asiatica HOM05D005452 ORTHO05D006618 6.4e-23 110.9 82 73.2
A06p42060 Brassica napus HOM05D005452 ORTHO05D006618 1.1e-22 110.2 110 57.3
C07p35420 Brassica napus HOM05D005452 ORTHO05D006618 1.1e-22 110.2 110 57.3
BraA06t27123Z Brassica rapa HOM05D005452 ORTHO05D006618 1.1e-22 110.2 110 57.3
BolC7t44066H Brassica oleracea HOM05D005452 ORTHO05D006618 1.4e-22 109.8 110 57.3
Lj3C54T6 Lonicera japonica HOM05D005452 ORTHO05D006618 1.4e-22 109.8 79 74.7
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.8e-22 109.4 118 55.9
MELO3C030920.2 Cucumis melo HOM05D005452 ORTHO05D006618 2.4e-22 109.0 110 60.9
Aa31LG2G6150 Aethionema arabicum HOM05D005452 ORTHO05D006618 3.2e-22 108.6 82 69.5
ATR0691G211 Amborella trichopoda HOM05D005452 ORTHO05D006618 3.2e-22 108.6 77 74.0
Migut.K00615 Erythranthe guttata HOM05D005452 ORTHO05D006618 4.1e-22 108.2 113 59.3
AL5G15130 Arabidopsis lyrata HOM05D005452 ORTHO05D006618 5.4e-22 107.8 113 56.6
Aqoxy3G01257 Aquilegia oxysepala HOM05D005452 ORTHO05D006618 7.0e-22 107.5 115 54.8
BolC2t11364H Brassica oleracea HOM05D005452 ORTHO05D006618 9.2e-22 107.1 110 57.3
CAN.G128.103 Capsicum annuum HOM05D005452 ORTHO05D000001 1.2e-21 106.7 109 57.8
PSO017G6805 Papaver somniferum HOM05D005452 ORTHO05D006618 1.2e-21 106.7 116 54.3
Peaxi162Scf00067g00116 Petunia axillaris HOM05D005452 ORTHO05D006618 1.6e-21 106.3 108 58.3
Cc01_g03580 Coffea canephora HOM05D005452 ORTHO05D006618 2.7e-21 105.5 113 57.5
Oeu049174.1 Olea europaea HOM05D005452 ORTHO05D006618 2.7e-21 105.5 110 58.2
SHI03748 Sapria himalayana HOM05D005452 ORTHO05D006618 7.8e-21 104.0 111 60.4
Gohir.D05G226100 Gossypium hirsutum HOM05D005452 ORTHO05D006618 1.0e-20 103.6 78 73.1
HPP92_017381 Vanilla planifolia HOM05D005452 ORTHO05D006618 1.3e-20 103.2 110 52.7
Peaxi162Scf00128g00434 Petunia axillaris HOM05D005452 ORTHO05D006618 3.9e-20 101.7 79 69.6
MD04G1159200 Malus domestica HOM05D005452 ORTHO05D006618 1.6e-18 96.3 110 51.8
MD12G1125700 Malus domestica HOM05D005452 ORTHO05D006618 2.1e-18 95.9 110 50.9
SalBow6G5661 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.8e-18 95.5 65 76.9
SEGI_39778 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 4.7e-18 94.7 78 64.1
Zm00001eb053730 Zea mays HOM05D005452 ORTHO05D006618 6.2e-18 94.4 97 53.6
SEGI_27388 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 8.0e-18 94.0 78 64.1
Zm00001eb217020 Zea mays HOM05D005452 ORTHO05D006618 2.3e-17 92.4 81 59.3
MBI15_g11303_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 7.5e-16 87.4 107 54.2
Os03g0694700 Oryza sativa ssp. japonica HOM05D005452 ORTHO05D006618 4.9e-15 84.7 83 57.8
Medtr3g450960 Medicago truncatula HOM05D005452 ORTHO05D006618 4.6e-13 78.2 57 80.7
vmacro01118 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 1.3e-12 76.6 61 67.2
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 1.2e-10 70.1 80 52.5
unitig_8.g2920 Utricularia gibba HOM05D005452 ORTHO05D006618 8.1e-10 67.4 53 69.8
SalBow6G2133 Salvia bowleyana HOM05D009895 ORTHO05D006618 6.8e-09 64.3 44 68.2
Nn1g09342 Nelumbo nucifera HOM05D005452 ORTHO05D006618 8.9e-09 63.9 60 56.7
SalBow6G0426 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.4e-08 61.6 39 76.9


User provided reference genes

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