Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0026688 Lotus japonicus HOM05D006151 ORTHO05D007487 4.0e-131 471.5 243 100.0
Phvul.007G081100 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 2.1e-87 326.2 244 73.8
Glyma.20G168200 Glycine max HOM05D006151 ORTHO05D007487 6.7e-86 321.2 247 73.3
VMungo0720G2232 Vigna mungo HOM05D006151 ORTHO05D007487 1.1e-80 303.9 224 74.1
Medtr1g098580 Medicago truncatula HOM05D006151 ORTHO05D007487 1.4e-80 303.5 248 71.0
Lalb_Chr06g0161651 Lupinus albus HOM05D006151 ORTHO05D007487 3.2e-80 302.4 242 69.8
Psat6g192320 Pisum sativum HOM05D006151 ORTHO05D007487 7.1e-80 301.2 247 70.4
arahy.Tifrunner.gnm1.ann1.2F6CI2 Arachis hypogaea HOM05D006151 ORTHO05D007487 1.5e-77 293.5 245 70.2
Glyma.10G223700 Glycine max HOM05D006151 ORTHO05D007487 2.1e-76 289.7 240 68.3
TPR.G17045 Trifolium pratense HOM05D006151 ORTHO05D007487 2.5e-72 276.2 248 66.1
Cfa018318 Carpinus fangiana HOM05D006151 ORTHO05D007487 4.6e-71 271.9 229 66.8
Glyma.16G166000 Glycine max HOM05D006151 ORTHO05D007487 7.9e-71 271.2 247 65.2
CANSAT25G1414 Cannabis sativa HOM05D006151 ORTHO05D007487 2.3e-70 269.6 249 61.4
RcHm_v2.0_Chr6g0275291 Rosa chinensis HOM05D006151 ORTHO05D007487 5.1e-70 268.5 246 61.0
FAN20G0746 Fragaria x ananassa HOM05D006151 ORTHO05D007487 6.7e-70 268.1 247 61.1
FAN24G0867 Fragaria x ananassa HOM05D006151 ORTHO05D007487 5.7e-69 265.0 248 60.9
COL.COLO4_04528 Corchorus olitorius HOM05D006151 ORTHO05D007487 9.7e-69 264.2 244 60.2
Thecc.08G153600 Theobroma cacao HOM05D006151 ORTHO05D007487 9.7e-69 264.2 244 60.7
FvH4_2g13650 Fragaria vesca HOM05D006151 ORTHO05D007487 2.2e-68 263.1 248 60.5
Manes.02G180000 Manihot esculenta HOM05D006151 ORTHO05D007487 2.2e-68 263.1 243 59.3
FAN15G1313 Fragaria x ananassa HOM05D006151 ORTHO05D007487 4.8e-68 261.9 248 60.9
FAN27G2560 Fragaria x ananassa HOM05D006151 ORTHO05D007487 8.2e-68 261.2 248 60.5
Atru.chr13.2098 Acer truncatum HOM05D006151 ORTHO05D007487 6.9e-67 258.1 244 58.2
Ciclev10002306m.g Citrus clementina HOM05D006151 ORTHO05D007487 1.5e-66 256.9 243 60.5
Cpa.g.sc21.206 Carica papaya HOM05D006151 ORTHO05D007487 4.5e-66 255.4 250 59.2
CiPaw.15G015800 Carya illinoinensis HOM05D006151 ORTHO05D007487 5.9e-66 255.0 237 60.3
Gorai.005G078700 Gossypium raimondii HOM05D006151 ORTHO05D007487 5.9e-66 255.0 243 59.3
Ca_10677_v3 Cicer arietinum L. HOM05D006151 ORTHO05D007487 1.3e-65 253.8 230 64.8
GSVIVG01034539001 Vitis vinifera HOM05D006151 ORTHO05D007487 1.7e-65 253.4 241 58.9
Duzib041G0750 Durio zibethinus HOM05D006151 ORTHO05D007487 3.8e-65 252.3 240 59.2
Dinv25871 Davidia involucrata HOM05D006151 ORTHO05D007487 5.0e-65 251.9 244 59.8
Gohir.D02G069400 Gossypium hirsutum HOM05D006151 ORTHO05D007487 5.0e-65 251.9 243 58.8
Potri.002G067600 Populus trichocarpa HOM05D006151 ORTHO05D007487 5.5e-64 248.4 242 62.0
Duzib116G0486 Durio zibethinus HOM05D006151 ORTHO05D007487 3.6e-63 245.7 244 58.6
Actinidia04761 Actinidia chinensis HOM05D006151 ORTHO05D007487 4.6e-63 245.4 229 60.7
CSS0023884 Camellia sinensis var. sinensis HOM05D006151 ORTHO05D007487 6.1e-63 245.0 239 58.2
Eucgr.F04235 Eucalyptus grandis HOM05D006151 ORTHO05D007487 6.1e-63 245.0 244 54.9
TAR628G1632 Trochodendron aralioides HOM05D006151 ORTHO05D007487 1.4e-62 243.8 240 57.5
vmacro01457 Vaccinium macrocarpon HOM05D006151 ORTHO05D007487 1.4e-62 243.8 233 60.5
CAN.G268.27 Capsicum annuum HOM05D006151 ORTHO05D007487 1.8e-62 243.4 240 58.3
Nitab4.5_0001062g0090 Nicotiana tabacum HOM05D006151 ORTHO05D007487 2.3e-62 243.0 222 61.7
Gohir.A02G063800 Gossypium hirsutum HOM05D006151 ORTHO05D007487 5.1e-62 241.9 221 59.7
ClCG08G007050 Citrullus lanatus HOM05D006151 ORTHO05D007487 8.8e-62 241.1 244 55.7
Prupe.8G031400 Prunus persica HOM05D006151 ORTHO05D007487 1.1e-61 240.7 243 56.8
Rhsim11G0083500 Rhododendron simsii HOM05D006151 ORTHO05D007487 2.0e-61 240.0 222 60.4
Gohir.D05G244900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 3.3e-61 239.2 227 60.8
MD05G1026900 Malus domestica HOM05D006151 ORTHO05D007487 5.7e-61 238.4 249 55.8
TWI34G1794 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 5.7e-61 238.4 234 58.1
MD10G1026200 Malus domestica HOM05D006151 ORTHO05D007487 9.7e-61 237.7 248 54.4
TAR381G1121 Trochodendron aralioides HOM05D006151 ORTHO05D007487 2.2e-60 236.5 224 57.1
Duzib093G0584 Durio zibethinus HOM05D006151 ORTHO05D007487 2.8e-60 236.1 241 58.5
Peaxi162Scf00599g00048 Petunia axillaris HOM05D006151 ORTHO05D007487 3.7e-60 235.7 244 59.4
Potri.005G192800 Populus trichocarpa HOM05D006151 ORTHO05D007487 4.8e-60 235.3 246 57.7
arahy.Tifrunner.gnm1.ann1.5IW37T Arachis hypogaea HOM05D006151 ORTHO05D007487 2.4e-59 233.0 245 60.8
Solyc04g071500.4 Solanum lycopersicum HOM05D006151 ORTHO05D007487 3.1e-59 232.6 222 61.3
Nitab4.5_0009071g0020 Nicotiana tabacum HOM05D006151 ORTHO05D007487 4.1e-59 232.3 233 58.4
VMungo0464G0684 Vigna mungo HOM05D006151 ORTHO05D007487 4.1e-59 232.3 226 60.6
Phvul.004G093600 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 5.3e-59 231.9 225 59.6
Sopen04g027470 Solanum pennellii HOM05D006151 ORTHO05D007487 5.3e-59 231.9 222 61.3
PGSC0003DMG400024091 Solanum tuberosum HOM05D006151 ORTHO05D007487 9.1e-59 231.1 222 60.8
Hma1.2p1_0105F.1_g050630 Hydrangea macrophylla HOM05D006151 ORTHO05D007487 2.0e-58 229.9 238 56.7
Migut.C00998 Erythranthe guttata HOM05D006151 ORTHO05D007487 2.6e-58 229.6 242 54.5
QL02p039028 Quercus lobata HOM05D006151 ORTHO05D007487 2.6e-58 229.6 239 57.3
Sed0016357 Sechium edule HOM05D006151 ORTHO05D007487 1.0e-57 227.6 242 54.1
Cc10_g14430 Coffea canephora HOM05D006151 ORTHO05D007487 2.2e-57 226.5 239 53.6
MELO3C008336.2 Cucumis melo HOM05D006151 ORTHO05D007487 3.8e-57 225.7 248 52.4
Gohir.A05G243900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 5.0e-57 225.3 225 57.8
Gorai.009G254700 Gossypium raimondii HOM05D006151 ORTHO05D007487 1.9e-56 223.4 227 57.3
THA.LOC104813720 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 7.2e-56 221.5 249 53.8
DCAR_001140 Daucus carota HOM05D006151 ORTHO05D007487 3.6e-55 219.2 234 53.0
PGR044G2378 Punica granatum HOM05D006151 ORTHO05D007487 4.7e-55 218.8 238 50.4
PGR100G0011 Punica granatum HOM05D006151 ORTHO05D007487 4.7e-55 218.8 238 50.4
Oeu046040.1 Olea europaea HOM05D006151 ORTHO05D007487 1.4e-54 217.2 241 52.7
Dinv41078 Davidia involucrata HOM05D006151 ORTHO05D007487 1.8e-54 216.9 251 54.2
Nn5g28758 Nelumbo nucifera HOM05D006151 ORTHO05D007487 3.0e-54 216.1 230 53.0
Nn1g06074 Nelumbo nucifera HOM05D006151 ORTHO05D007487 3.3e-53 212.6 243 50.6
PGR080G0005 Punica granatum HOM05D006151 ORTHO05D007487 3.3e-53 212.6 226 50.4
PSO210G3290 Papaver somniferum HOM05D006151 ORTHO05D007487 1.7e-52 210.3 231 50.6
Sp1g18760 Schrenkiella parvula HOM05D006151 ORTHO05D007487 2.8e-52 209.5 245 50.6
AT1G21090 Arabidopsis thaliana HOM05D006151 ORTHO05D007487 4.8e-52 208.8 246 52.8
CARHR021560 Cardamine hirsuta HOM05D006151 ORTHO05D007487 6.3e-52 208.4 247 52.2
MSTRG.1087 Avicennia marina HOM05D006151 ORTHO05D007487 8.2e-52 208.0 246 51.2
THA.LOC104812035 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 1.4e-51 207.2 218 52.8
PSO447G0272 Papaver somniferum HOM05D006151 ORTHO05D007487 1.8e-51 206.8 235 49.4
BcaB03g14281 Brassica carinata HOM05D006151 ORTHO05D007487 2.4e-51 206.5 246 50.8
AL1G34140 Arabidopsis lyrata HOM05D006151 ORTHO05D007487 1.2e-50 204.1 248 51.2
Manes.18G092600 Manihot esculenta HOM05D006151 ORTHO05D007487 3.5e-50 202.6 207 56.0
Carub.0001s2055 Capsella rubella HOM05D006151 ORTHO05D007487 7.7e-50 201.4 243 51.4
AUR62013592 Chenopodium quinoa HOM05D006151 ORTHO05D007487 7.7e-50 201.4 227 52.0
AUR62026702 Chenopodium quinoa HOM05D006151 ORTHO05D007487 1.0e-49 201.1 220 53.2
BraA06t24819Z Brassica rapa HOM05D006151 ORTHO05D007487 3.8e-49 199.1 246 50.0
C05p19820 Brassica napus HOM05D006151 ORTHO05D007487 5.0e-49 198.7 246 50.0
BolC5t30681H Brassica oleracea HOM05D006151 ORTHO05D007487 5.0e-49 198.7 246 50.0
TWI60G0448 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 5.0e-49 198.7 175 61.1
BcaB07g32102 Brassica carinata HOM05D006151 ORTHO05D007487 8.5e-49 198.0 245 49.4
A06p17160 Brassica napus HOM05D006151 ORTHO05D007487 1.9e-48 196.8 246 49.6
SGA_v2.0_scaffold24G10349 Striga asiatica HOM05D000219 ORTHO05D000226 2.5e-48 196.4 212 54.2
Sed0009804 Sechium edule HOM05D006151 ORTHO05D007487 3.2e-48 196.1 243 49.8
HanXRQChr05g0161971 Helianthus annuus HOM05D006151 ORTHO05D007487 7.2e-48 194.9 249 49.8
Hund26694 Selenicereus undatus HOM05D006151 ORTHO05D007487 2.7e-47 193.0 222 50.9
CsaV3_6G005160 Cucumis sativus L. HOM05D006151 ORTHO05D007487 1.0e-46 191.0 234 49.6
Lsat_1_v5_gn_6_100560 Lactuca sativa HOM05D006151 ORTHO05D007487 3.9e-46 189.1 265 46.4
EL10Ac1g01556 Beta vulgaris HOM05D006151 ORTHO05D007487 1.7e-44 183.7 203 50.7
MBI09_g40713_MAGBIO Magnolia biondii HOM05D006151 ORTHO05D007487 2.8e-44 183.0 221 52.5
Aqoxy5G02075 Aquilegia oxysepala HOM05D006151 ORTHO05D007487 6.3e-44 181.8 231 51.1
Peaxi162Scf01294g00115 Petunia axillaris HOM05D006151 ORTHO05D007487 1.1e-43 181.0 239 48.1
ECA246G2194 Erigeron canadensis HOM05D006151 ORTHO05D007487 1.0e-41 174.5 277 42.2
Thhalv10008611m.g Eutrema salsugineum HOM05D006151 ORTHO05D007487 2.2e-41 173.3 245 46.1
Nitab4.5_0002487g0030 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.9e-40 170.2 204 52.0
Hund17438 Selenicereus undatus HOM05D006151 ORTHO05D007487 1.6e-39 167.2 222 45.9
Aa31LG7G5240 Aethionema arabicum HOM05D006151 ORTHO05D007487 2.1e-39 166.8 197 50.8
BcaC05g26017 Brassica carinata HOM05D006151 ORTHO05D007487 3.0e-38 162.9 205 49.3
BcaC06g34887 Brassica carinata HOM05D006151 ORTHO05D007487 8.8e-38 161.4 181 51.9
C07p22470 Brassica napus HOM05D006151 ORTHO05D007487 8.8e-38 161.4 181 51.9
BolC7t42748H Brassica oleracea HOM05D006151 ORTHO05D007487 8.8e-38 161.4 181 51.9
BraA07t29267Z Brassica rapa HOM05D006151 ORTHO05D007487 8.8e-38 161.4 184 51.6
A07p15290 Brassica napus HOM05D006151 ORTHO05D007487 7.5e-37 158.3 184 51.1
Actinidia29533 Actinidia chinensis HOM05D006151 ORTHO05D007487 5.3e-35 152.1 123 61.8
unitig_748.g7705 Utricularia gibba HOM05D006151 ORTHO05D007487 7.2e-32 141.7 217 44.7
Nitab4.5_0010143g0010 Nicotiana tabacum HOM05D006151 ORTHO05D007487 2.3e-30 136.7 234 46.2
Ah.05g167920 Amaranthus hybridus HOM05D006151 ORTHO05D007487 5.7e-29 132.1 214 41.1
Lj7C374T8 Lonicera japonica HOM05D006151 ORTHO05D007487 2.7e-26 123.2 138 51.4
HPP92_004418 Vanilla planifolia HOM05D006151 ORTHO05D007487 8.6e-25 118.2 239 33.1
Peaxi162Scf00476g00615 Petunia axillaris HOM05D002901 ORTHO05D003183 5.9e-18 95.5 96 59.4
CDE08G0602 Ceratophyllum demersum HOM05D006151 ORTHO05D007487 1.3e-17 94.4 245 35.5
Sc02g0004030 Simmondsia chinensis HOM05D006151 ORTHO05D007487 2.9e-17 93.2 167 43.7
GSVIVG01026618001 Vitis vinifera HOM05D006151 ORTHO05D007487 5.8e-13 79.0 117 44.4
Nn1g02131 Nelumbo nucifera HOM05D006151 ORTHO05D007487 7.5e-13 78.6 176 35.8
Oeu016600.1 Olea europaea HOM05D006151 ORTHO05D007487 8.9e-06 55.1 60 50.0


User provided reference genes

Program Settings